Module _protocols_toolbox_

AdjacentRemainingNodes( (Node)node) -> object :
    protocols/toolbox/NetworkAlgorithms.hh:107

    C++ signature :
        std::list<boost::shared_ptr<protocols::toolbox::Node>, std::allocator<boost::shared_ptr<protocols::toolbox::Node> > > AdjacentRemainingNodes(boost::shared_ptr<protocols::toolbox::Node>)

CA_superimpose( (Pose)ref_pose, (Pose)fit_pose) -> None :
    protocols/toolbox/superimpose.hh:35

    C++ signature :
        void CA_superimpose(core::pose::Pose,core::pose::Pose {lvalue})

CA_superimpose( (object)weights, (Pose)ref_pose, (Pose)fit_pose) -> None :
    protocols/toolbox/superimpose.hh:34

    C++ signature :
        void CA_superimpose(ObjexxFCL::FArray1<double>,core::pose::Pose,core::pose::Pose {lvalue})

Contains( (object)nodes, (Node)node) -> bool :
    protocols/toolbox/NetworkAlgorithms.hh:110

    C++ signature :
        bool Contains(std::list<boost::shared_ptr<protocols::toolbox::Node>, std::allocator<boost::shared_ptr<protocols::toolbox::Node> > >,boost::shared_ptr<protocols::toolbox::Node const>)

ExtractSmallest( (object)nodes) -> Node :
    protocols/toolbox/NetworkAlgorithms.hh:104

    C++ signature :
        boost::shared_ptr<protocols::toolbox::Node> ExtractSmallest(std::list<boost::shared_ptr<protocols::toolbox::Node>, std::allocator<boost::shared_ptr<protocols::toolbox::Node> > > {lvalue})

    protocols/toolbox/PyReturnValuePolicyTest.hh:57

    C++ signature :
        boost::shared_ptr<protocols::toolbox::DummyClass const> PyReturnValuePolicyTest_DummyClassCOP()

Returns: DummyClass :

    protocols/toolbox/PyReturnValuePolicyTest.hh:56

    C++ signature :
        boost::shared_ptr<protocols::toolbox::DummyClass> PyReturnValuePolicyTest_DummyClassOP()

Returns: DummyClass :

    protocols/toolbox/PyReturnValuePolicyTest.hh:100

    C++ signature :
        boost::shared_ptr<core::pose::Pose const> PyReturnValuePolicyTest_PoseCOP()

Returns: Pose :

    protocols/toolbox/PyReturnValuePolicyTest.hh:99

    C++ signature :
        boost::shared_ptr<core::pose::Pose> PyReturnValuePolicyTest_PoseOP()

Returns: Pose :

    protocols/toolbox/PyReturnValuePolicyTest.hh:94

    C++ signature :
        boost::shared_ptr<protocols::toolbox::SF_Replica const> PyReturnValuePolicyTest_SF_ReplicaCOP()

Returns: SF_Replica :

    protocols/toolbox/PyReturnValuePolicyTest.hh:93

    C++ signature :
        boost::shared_ptr<protocols::toolbox::SF_Replica> PyReturnValuePolicyTest_SF_ReplicaOP()

Returns: SF_Replica :

    protocols/toolbox/PyReturnValuePolicyTest.hh:105

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction const> PyReturnValuePolicyTest_ScoreFunctionCOP()

Returns: ScoreFunction :

    protocols/toolbox/PyReturnValuePolicyTest.hh:106

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction const> PyReturnValuePolicyTest_ScoreFunctionCOP2()

Returns: ScoreFunction :

    protocols/toolbox/PyReturnValuePolicyTest.hh:104

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction> PyReturnValuePolicyTest_ScoreFunctionOP()

Returns: ScoreFunction :

apply_superposition_transform( (Pose)pose, (xyzMatrix_Real)rotation, (xyzVector_Real)to_init_center, (xyzVector_Real)to_fit_center) -> None :
    protocols/toolbox/superimpose.hh:110

    C++ signature :
        void apply_superposition_transform(core::pose::Pose {lvalue},numeric::xyzMatrix<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

apply_superposition_transform_to_jump( (Pose)pose, (int)jump_id, (xyzMatrix_Real)rotation, (xyzVector_Real)to_init_center, (xyzVector_Real)to_fit_center) -> None :
    protocols/toolbox/superimpose.hh:100

    C++ signature :
        void apply_superposition_transform_to_jump(core::pose::Pose {lvalue},unsigned long,numeric::xyzMatrix<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

dump_as_pdb( (str)filename, (int)n, (object)coords, (object)transvec) -> None :
    write a CA ALA pdb
    

    C++ signature :
        void dump_as_pdb(std::string,unsigned long,ObjexxFCL::FArray2<double> {lvalue},ObjexxFCL::FArray1D<double>)

file_full_path( (str)) -> str :
    protocols/toolbox/KCluster.hh:333

    C++ signature :
        std::string file_full_path(std::string)

fill_CA_coords( (Pose)pose, (object)coords) -> None :
    protocols/toolbox/superimpose.hh:155

    C++ signature :
        void fill_CA_coords(core::pose::Pose,ObjexxFCL::FArray2<double> {lvalue})

fill_CA_coords( (Pose)pose, (int)natoms, (object)coords) -> None :
    protocols/toolbox/superimpose.hh:154

    C++ signature :
        void fill_CA_coords(core::pose::Pose,unsigned long,ObjexxFCL::FArray2<double> {lvalue})

fit_centered_coords( (int)natoms, (object)weights, (object)ref_coords, (object)coords, (xyzMatrix_Real)R) -> None :
    protocols/toolbox/superimpose.hh:137

    C++ signature :
        void fit_centered_coords(unsigned long,ObjexxFCL::FArray1<double>,ObjexxFCL::FArray2<double>,ObjexxFCL::FArray2<double> {lvalue},numeric::xyzMatrix<double> {lvalue})

fix_tag_suffix( (str)) -> str :
    protocols/toolbox/KCluster.hh:335

    C++ signature :
        std::string fix_tag_suffix(std::string)

get_K_cluster_engine( (str)) -> KCluster :
    protocols/toolbox/KCluster.hh:331

    C++ signature :
        boost::shared_ptr<protocols::toolbox::KCluster> get_K_cluster_engine(std::string)

reset_x( (int)n, (object)x, (object)wts, (object)transvec) -> None :
    protocols/toolbox/superimpose.hh:144

    C++ signature :
        void reset_x(unsigned long,ObjexxFCL::FArray2<double> {lvalue},ObjexxFCL::FArray1<double>,ObjexxFCL::FArray1<double> {lvalue})

superposition_transform( (int)natoms, (object)weights, (object)ref_coords, (object)coords, (xyzMatrix_Real)R, (xyzVector_Real)toCenter, (xyzVector_Real)toFitCenter) -> None :
    protocols/toolbox/superimpose.hh:129

    C++ signature :
        void superposition_transform(unsigned long,ObjexxFCL::FArray1<double>,ObjexxFCL::FArray2<double> {lvalue},ObjexxFCL::FArray2<double> {lvalue},numeric::xyzMatrix<double> {lvalue},numeric::xyzVector<double> {lvalue},numeric::xyzVector<double> {lvalue})

superposition_transform( (vector1_xyzVector_Real)init_coords, (vector1_xyzVector_Real)ref_coords, (vector1_Real)coord_weights, (xyzMatrix_Real)rotation, (xyzVector_Real)to_init_center, (xyzVector_Real)to_fit_center) -> None :
    protocols/toolbox/superimpose.hh:89

    C++ signature :
        void superposition_transform(utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<double, std::allocator<double> > {lvalue},numeric::xyzMatrix<double> {lvalue},numeric::xyzVector<double> {lvalue},numeric::xyzVector<double> {lvalue})

superposition_transform( (vector1_xyzVector_Real)init_coords, (vector1_xyzVector_Real)ref_coords, (xyzMatrix_Real)rotation, (xyzVector_Real)to_init_center, (xyzVector_Real)to_fit_center) -> None :
    protocols/toolbox/superimpose.hh:69

    C++ signature :
        void superposition_transform(utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},numeric::xyzMatrix<double> {lvalue},numeric::xyzVector<double> {lvalue},numeric::xyzVector<double> {lvalue})