Package rosetta :: Package protocols :: Package jobdist :: Module _protocols_jobdist_

Module _protocols_jobdist_

Classes

AtomTreeDiffJobDistributor
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// Distributor for use with atomtree_diff silent files.

AtomTreeDiffJobDistributorAP

AtomTreeDiffJobDistributorCAP

BaseJobDistributor
Coordinates processing of jobs across multiple Rosetta processes.

BaseJobDistributorAP

BaseJobDistributorCAP

BasicJob
Each Job object describes a particular input to Rosetta.

BasicJobAP

BasicJobCAP

PlainPdbJobDistributor
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// Distributor for use with plain old PDB files.

PlainPdbJobDistributorAP

PlainPdbJobDistributorCAP

PlainRawJobDistributor
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// Distributor for use with raw files.

PlainRawJobDistributorAP

PlainRawJobDistributorCAP

PlainSilentFileJobDistributor
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////// Distributor for use with silent files.

PlainSilentFileJobDistributorAP

PlainSilentFileJobDistributorCAP

__CPP_BasicJob__

vector1_basicjob

Functions

[hide private]

get_output_tag(...)
get_output_tag( (Pose)pose) -> str : Helper function to safely get current output tag that's cached in Pose.

get_score_map(...)
get_score_map( (Pose)pose) -> map_string_Real : Helper function to safely get score_map that's cached in Pose.

vector1_basicjob :

load_s_and_l()
Makes BasicJob objects from command line flags -s, -l, and -nstruct.

main_plain_mover(...)
main_plain_mover( (Mover)mover [, (bool)random_permutation=True]) -> int : Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files.

main_plain_pdb_mover(...)
main_plain_pdb_mover( (Mover)mover, (__CPP_ScoreFunction__)scorefxn) -> int : Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files.

not_universal_main(...)
not_universal_main( (Mover)mover) -> int : protocols/jobdist/not_universal_main.hh:38

pose_matches_user_tag(...)
pose_matches_user_tag( (Pose)pose, (vector1_string)user_tags) -> bool : protocols/jobdist/not_universal_main.hh:34

None :

register_options_universal_main()
Handles loading and writing of silent files and or PDB files - superseeds the bottom two functions.

universal_main(...)
universal_main( (Mover)mover [, (float)thinout_factor=0.0]) -> int : protocols/jobdist/standard_mains.hh:40

Variables

[hide private]

__package__ = None

Function Details

[hide private]

get_output_tag(...)


get_output_tag( (Pose)pose) -> str :
    Helper function to safely get current output tag that's cached in Pose.
    

    C++ signature :
        std::string get_output_tag(core::pose::Pose)

get_score_map(...)


get_score_map( (Pose)pose) -> map_string_Real :
    Helper function to safely get score_map that's cached in Pose.
    

    C++ signature :
        std::map<std::string, double, std::less<std::string>, std::allocator<std::pair<std::string const, double> > > get_score_map(core::pose::Pose)

load_s_and_l()

    Makes BasicJob objects from command line flags -s, -l, and -nstruct.
    

    C++ signature :
        utility::vector1<boost::shared_ptr<protocols::jobdist::BasicJob>, std::allocator<boost::shared_ptr<protocols::jobdist::BasicJob> > > load_s_and_l()

Returns: vector1_basicjob :

main_plain_mover(...)


main_plain_mover( (Mover)mover [, (bool)random_permutation=True]) -> int :
    Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files.
    Supplied Mover is used to transform input structure into output structure.
    

    C++ signature :
        int main_plain_mover(protocols::moves::Mover {lvalue} [,bool=True])

main_plain_pdb_mover(...)


main_plain_pdb_mover( (Mover)mover, (__CPP_ScoreFunction__)scorefxn) -> int :
    Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files.
    Supplied Mover is used to transform input structure into output structure.
    

    C++ signature :
        int main_plain_pdb_mover(protocols::moves::Mover {lvalue},boost::shared_ptr<core::scoring::ScoreFunction>)

not_universal_main(...)


not_universal_main( (Mover)mover) -> int :
    protocols/jobdist/not_universal_main.hh:38

    C++ signature :
        int not_universal_main(protocols::moves::Mover {lvalue})

pose_matches_user_tag(...)


pose_matches_user_tag( (Pose)pose, (vector1_string)user_tags) -> bool :
    protocols/jobdist/not_universal_main.hh:34

    C++ signature :
        bool pose_matches_user_tag(core::pose::Pose {lvalue},utility::vector1<std::string, std::allocator<std::string> >)

register_options_universal_main()

    Handles loading and writing of silent files and or PDB files - superseeds the bottom two
    functions.
    

    C++ signature :
        void register_options_universal_main()

Returns: None :

universal_main(...)


universal_main( (Mover)mover [, (float)thinout_factor=0.0]) -> int :
    protocols/jobdist/standard_mains.hh:40

    C++ signature :
        int universal_main(protocols::moves::Mover {lvalue} [,float=0.0])