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H
h1
(in
CDRNameEnum
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPCA_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h1
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPCA_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
h1
(in
rosetta.protocols.antibody
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
hbe_dPBAaPCA_RNAsepother
(in
HBEvalType
)
h1()
(in
HelixPairing
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_10_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H1_10_1
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaPCA_RNAsepPM1
(in
HBEvalType
)
H1_10_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_12_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_12_1
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hbe_dPBAaPES_DNAsepother
(in
HBEvalType
)
H1_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPES_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPES_DNAsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_1
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
hbe_dPBAaPES_DNAsepPM1
(in
HBEvalType
)
H1_13_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPES_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_10
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPES_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_10
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaPES_RNAsepother
(in
HBEvalType
)
H1_13_10
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_11
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_11
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
hbe_dPBAaPES_RNAsepPM1
(in
HBEvalType
)
H1_13_11
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_2
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
hbe_dPBAaRRI_DNAsepother
(in
HBEvalType
)
H1_13_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaRRI_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaRRI_DNAsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_3
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_DNA
(in
HBEvalType
)
hbe_dPBAaRRI_DNAsepPM1
(in
HBEvalType
)
H1_13_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaRRI_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_4
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaRRI_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_4
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
hbe_dPBAaRRI_RNAsepother
(in
HBEvalType
)
H1_13_4
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_5
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_5
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaRRI_RNAsepPM1
(in
HBEvalType
)
H1_13_5
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_6
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_6
(in
CDRClusterEnum
)
hbe_dAROMATIC_HYDROXYLaWATER
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepother
(in
HBEvalType
)
H1_13_6
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dAROMATIC_HYDROXYLaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_7
(in
rosetta.protocols.antibody.clusters
)
hbe_dAROMATIC_HYDROXYLaWATER
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_7
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaAROMATIC_HYDROXYL
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepPM1
(in
HBEvalType
)
H1_13_7
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_8
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_8
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaCARBOXAMIDE
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepother
(in
HBEvalType
)
H1_13_8
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_9
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepother
(in
rosetta.core.scoring.hbonds
)
H1_13_9
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaCARBOXYL
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepPM1
(in
HBEvalType
)
H1_13_9
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_13_cis9_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_13_cis9_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaHYDROXYL
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepother
(in
HBEvalType
)
H1_13_cis9_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_14_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepother
(in
rosetta.core.scoring.hbonds
)
H1_14_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaIMIDAZOL_DELTA
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepPM1
(in
HBEvalType
)
H1_14_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_15_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepPM1
(in
rosetta.core.scoring.hbonds
)
H1_15_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaIMIDAZOL_EPSILON
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepother
(in
HBEvalType
)
H1_15_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H1_16_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepother
(in
rosetta.core.scoring.hbonds
)
H1_16_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepPM1
(in
HBEvalType
)
H1_16_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h2
(in
CDRNameEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepPM1
(in
rosetta.core.scoring.hbonds
)
h2
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepother
(in
HBEvalType
)
h2
(in
rosetta.protocols.antibody
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h2()
(in
HelixPairing
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepother
(in
rosetta.core.scoring.hbonds
)
H2_10_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepPM1
(in
HBEvalType
)
H2_10_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepPM1
(in
rosetta.core.scoring.hbonds
)
H2_10_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM2turn
(in
HBEvalType
)
H2_10_2
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM2turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM2turn
(in
rosetta.core.scoring.hbonds
)
H2_10_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM3turn
(in
HBEvalType
)
H2_10_3
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM3turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM3turn
(in
rosetta.core.scoring.hbonds
)
H2_10_4
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM4helix
(in
HBEvalType
)
H2_10_4
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM4helix
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_4
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM4helix
(in
rosetta.core.scoring.hbonds
)
H2_10_5
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
H2_10_5
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_5
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
H2_10_6
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP2turn
(in
HBEvalType
)
H2_10_6
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP2turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_6
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP2turn
(in
rosetta.core.scoring.hbonds
)
H2_10_7
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaRIBOSE_RING_DNA
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP3turn
(in
HBEvalType
)
H2_10_7
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP3turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_7
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP3turn
(in
rosetta.core.scoring.hbonds
)
H2_10_8
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP4helix
(in
HBEvalType
)
H2_10_8
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP4helix
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_8
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP4helix
(in
rosetta.core.scoring.hbonds
)
H2_10_9
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
H2_10_9
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_10_9
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
H2_12_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCARBOXAMIDEaWATER
(in
HBEvalType
)
hbe_dPROTEIN_BB_AMIDEaWATER
(in
HBEvalType
)
H2_12_1
(in
CDRClusterEnum
)
hbe_dCARBOXAMIDEaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEIN_BB_AMIDEaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCARBOXAMIDEaWATER
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEIN_BB_AMIDEaWATER
(in
rosetta.core.scoring.hbonds
)
H2_15_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaAHX
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepother
(in
HBEvalType
)
H2_15_1
(in
CDRClusterEnum
)
hbe_dCXAaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_15_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaAHX
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepother
(in
rosetta.core.scoring.hbonds
)
H2_8_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaCXA
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepPM1
(in
HBEvalType
)
H2_8_1
(in
CDRClusterEnum
)
hbe_dCXAaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaCXA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepPM1
(in
rosetta.core.scoring.hbonds
)
H2_9_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaCXL
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepother
(in
HBEvalType
)
H2_9_1
(in
CDRClusterEnum
)
hbe_dCXAaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_9_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaCXL
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepother
(in
rosetta.core.scoring.hbonds
)
H2_9_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaH2O
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepPM1
(in
HBEvalType
)
H2_9_2
(in
CDRClusterEnum
)
hbe_dCXAaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_9_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaH2O
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H2_9_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaHXL
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
H2_9_3
(in
CDRClusterEnum
)
hbe_dCXAaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H2_9_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaHXL
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
h2o_hbond
(in
ScoreType
)
hbe_dCXAaIMD
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
h2o_hbond
(in
rosetta.core.scoring._core_scoring_
)
hbe_dCXAaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h2o_hbond
(in
rosetta.core.scoring
)
hbe_dCXAaIMD
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
h2o_hbond
(in
rosetta
)
hbe_dCXAaIME
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepother
(in
HBEvalType
)
h2o_hbond_score_1way()
(in
WaterAdductHBondPotential
)
hbe_dCXAaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h2o_intra
(in
ScoreType
)
hbe_dCXAaIME
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepother
(in
rosetta.core.scoring.hbonds
)
h2o_intra
(in
rosetta.core.scoring._core_scoring_
)
hbe_dCXAaPBAsepother
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepPM1
(in
HBEvalType
)
h2o_intra
(in
rosetta.core.scoring
)
hbe_dCXAaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h2o_intra
(in
rosetta
)
hbe_dCXAaPBAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
h3
(in
CDRNameEnum
)
hbe_dCXAaPBAsepPM1
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
h3
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dCXAaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h3
(in
rosetta.protocols.antibody
)
hbe_dCXAaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H3_10_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPCA_DNA
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
H3_10_1
(in
CDRClusterEnum
)
hbe_dCXAaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_10_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H3_10_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPCA_RNAsepother
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepother
(in
HBEvalType
)
H3_10_2
(in
CDRClusterEnum
)
hbe_dCXAaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_10_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepother
(in
rosetta.core.scoring.hbonds
)
H3_10_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPCA_RNAsepPM1
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepPM1
(in
HBEvalType
)
H3_10_3
(in
CDRClusterEnum
)
hbe_dCXAaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_10_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H3_10_cis5_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPES_DNA
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
H3_10_cis5_1
(in
CDRClusterEnum
)
hbe_dCXAaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_10_cis5_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPES_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H3_11_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPES_RNAsepother
(in
HBEvalType
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
H3_11_1
(in
CDRClusterEnum
)
hbe_dCXAaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_11_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
H3_11_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaPES_RNAsepPM1
(in
HBEvalType
)
hbe_dWATERaAROMATIC_HYDROXYL
(in
HBEvalType
)
H3_11_2
(in
CDRClusterEnum
)
hbe_dCXAaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_11_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
H3_12_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaRRI_DNA
(in
HBEvalType
)
hbe_dWATERaCARBOXAMIDE
(in
HBEvalType
)
H3_12_1
(in
CDRClusterEnum
)
hbe_dCXAaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
H3_12_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaRRI_RNAsepother
(in
HBEvalType
)
hbe_dWATERaCARBOXYL
(in
HBEvalType
)
H3_12_2
(in
CDRClusterEnum
)
hbe_dCXAaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_12_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
H3_12_cis9_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dCXAaRRI_RNAsepPM1
(in
HBEvalType
)
hbe_dWATERaHYDROXYL
(in
HBEvalType
)
H3_12_cis9_1
(in
CDRClusterEnum
)
hbe_dCXAaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_12_cis9_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dCXAaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
H3_13_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaAROMATIC_HYDROXYL
(in
HBEvalType
)
hbe_dWATERaIMIDAZOL_DELTA
(in
HBEvalType
)
H3_13_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_13_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
H3_13_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXAMIDE
(in
HBEvalType
)
hbe_dWATERaIMIDAZOL_EPSILON
(in
HBEvalType
)
H3_13_2
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_13_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
H3_13_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXYL
(in
HBEvalType
)
hbe_dWATERaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
H3_13_3
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_13_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
H3_13_cis7_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaHYDROXYL
(in
HBEvalType
)
hbe_dWATERaPHOSPHATE_CARBONYL_RNA
(in
HBEvalType
)
H3_13_cis7_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaPHOSPHATE_CARBONYL_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_13_cis7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaPHOSPHATE_CARBONYL_RNA
(in
rosetta.core.scoring.hbonds
)
H3_13_cis8_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_DELTA
(in
HBEvalType
)
hbe_dWATERaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
H3_13_cis8_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_13_cis8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
H3_14_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_EPSILON
(in
HBEvalType
)
hbe_dWATERaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
H3_14_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_14_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H3_14_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_DNA
(in
HBEvalType
)
hbe_dWATERaRIBOSE_RING_DNA
(in
HBEvalType
)
H3_14_2
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_14_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
H3_14_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepother
(in
HBEvalType
)
hbe_dWATERaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
H3_14_3
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_14_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
H3_14_4
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepPM1
(in
HBEvalType
)
hbe_dWATERaWATER
(in
HBEvalType
)
H3_14_4
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dWATERaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_14_4
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dWATERaWATER
(in
rosetta.core.scoring.hbonds
)
H3_14_cis7_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hbe_GENERIC_RINGBB_LR
(in
HBEvalType
)
H3_14_cis7_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGBB_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_14_cis7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGBB_LR
(in
rosetta.core.scoring.hbonds
)
H3_15_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
hbe_GENERIC_RINGBB_SR
(in
HBEvalType
)
H3_15_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGBB_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_15_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGBB_SR
(in
rosetta.core.scoring.hbonds
)
H3_15_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
hbe_GENERIC_RINGBSC_LR
(in
HBEvalType
)
H3_15_2
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGBSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_15_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGBSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_16_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
hbe_GENERIC_RINGBSC_SR
(in
HBEvalType
)
H3_16_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGBSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_16_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGBSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_16_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
hbe_GENERIC_RINGSCSC_LR
(in
HBEvalType
)
H3_16_2
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGSCSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_16_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGSCSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_17_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_DNA
(in
HBEvalType
)
hbe_GENERIC_RINGSCSC_SR
(in
HBEvalType
)
H3_17_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_RINGSCSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_17_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_RINGSCSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_18_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
hbe_GENERIC_SP2BB_LR
(in
HBEvalType
)
H3_18_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2BB_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_18_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2BB_LR
(in
rosetta.core.scoring.hbonds
)
H3_18_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
hbe_GENERIC_SP2BB_SR
(in
HBEvalType
)
H3_18_2
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2BB_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_18_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2BB_SR
(in
rosetta.core.scoring.hbonds
)
H3_19_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dDIHYDRO_GUANIDINIUMaWATER
(in
HBEvalType
)
hbe_GENERIC_SP2BSC_LR
(in
HBEvalType
)
H3_19_1
(in
CDRClusterEnum
)
hbe_dDIHYDRO_GUANIDINIUMaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2BSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_19_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dDIHYDRO_GUANIDINIUMaWATER
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2BSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_20_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaAHX
(in
HBEvalType
)
hbe_GENERIC_SP2BSC_SR
(in
HBEvalType
)
H3_20_1
(in
CDRClusterEnum
)
hbe_dGDEaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2BSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_20_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaAHX
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2BSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_21_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaCXA
(in
HBEvalType
)
hbe_GENERIC_SP2SCSC_LR
(in
HBEvalType
)
H3_21_1
(in
CDRClusterEnum
)
hbe_dGDEaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2SCSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_21_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaCXA
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2SCSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_22_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaCXL
(in
HBEvalType
)
hbe_GENERIC_SP2SCSC_SR
(in
HBEvalType
)
H3_22_1
(in
CDRClusterEnum
)
hbe_dGDEaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP2SCSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_22_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaCXL
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP2SCSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_24_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaH2O
(in
HBEvalType
)
hbe_GENERIC_SP3BB_LR
(in
HBEvalType
)
H3_24_1
(in
CDRClusterEnum
)
hbe_dGDEaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3BB_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_24_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaH2O
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3BB_LR
(in
rosetta.core.scoring.hbonds
)
H3_26_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaHXL
(in
HBEvalType
)
hbe_GENERIC_SP3BB_SR
(in
HBEvalType
)
H3_26_1
(in
CDRClusterEnum
)
hbe_dGDEaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3BB_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_26_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaHXL
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3BB_SR
(in
rosetta.core.scoring.hbonds
)
H3_5_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaIMD
(in
HBEvalType
)
hbe_GENERIC_SP3BSC_LR
(in
HBEvalType
)
H3_5_1
(in
CDRClusterEnum
)
hbe_dGDEaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3BSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_5_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaIMD
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3BSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_5_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaIME
(in
HBEvalType
)
hbe_GENERIC_SP3BSC_SR
(in
HBEvalType
)
H3_5_2
(in
CDRClusterEnum
)
hbe_dGDEaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3BSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_5_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaIME
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3BSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_6_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPBAsepother
(in
HBEvalType
)
hbe_GENERIC_SP3SCSC_LR
(in
HBEvalType
)
H3_6_1
(in
CDRClusterEnum
)
hbe_dGDEaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3SCSC_LR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_6_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPBAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3SCSC_LR
(in
rosetta.core.scoring.hbonds
)
H3_7_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPBAsepPM1
(in
HBEvalType
)
hbe_GENERIC_SP3SCSC_SR
(in
HBEvalType
)
H3_7_1
(in
CDRClusterEnum
)
hbe_dGDEaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_GENERIC_SP3SCSC_SR
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_GENERIC_SP3SCSC_SR
(in
rosetta.core.scoring.hbonds
)
H3_7_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPCA_DNA
(in
HBEvalType
)
hbe_is_BB_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_7_2
(in
CDRClusterEnum
)
hbe_dGDEaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_is_SC_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_7_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_MAX
(in
HBEvalType
)
H3_7_3
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPCA_RNAsepother
(in
HBEvalType
)
hbe_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_7_3
(in
CDRClusterEnum
)
hbe_dGDEaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_MAX
(in
rosetta.core.scoring.hbonds
)
H3_7_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_NONE
(in
HBEvalType
)
H3_7_cis4_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPCA_RNAsepPM1
(in
HBEvalType
)
hbe_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_7_cis4_1
(in
CDRClusterEnum
)
hbe_dGDEaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_NONE
(in
rosetta.core.scoring.hbonds
)
H3_7_cis4_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_UNKNOWN
(in
HBEvalType
)
H3_8_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPES_DNA
(in
HBEvalType
)
hbe_UNKNOWN
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_8_1
(in
CDRClusterEnum
)
hbe_dGDEaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_UNKNOWN
(in
rosetta.core.scoring.hbonds
)
H3_8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPES_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_WATERaPROTEIN_BB_AMIDE
(in
HBEvalType
)
H3_8_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPES_RNAsepother
(in
HBEvalType
)
hbe_WATERaPROTEIN_BB_AMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_8_2
(in
CDRClusterEnum
)
hbe_dGDEaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_WATERaPROTEIN_BB_AMIDE
(in
rosetta.core.scoring.hbonds
)
H3_8_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HBEval_lookup_initializer()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_9_1
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaPES_RNAsepPM1
(in
HBEvalType
)
HBEvalTuple
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_9_1
(in
CDRClusterEnum
)
hbe_dGDEaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBEvalTupleAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_9_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HBEvalTupleCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_9_2
(in
rosetta.protocols.antibody.clusters
)
hbe_dGDEaRRI_DNA
(in
HBEvalType
)
HBEvalType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3_9_2
(in
CDRClusterEnum
)
hbe_dGDEaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBFadeInterval_from_name()
(in
HBondDatabase
)
H3_9_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
hbe_dGDEaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbgd_AHD
(in
HBGeoDimType
)
h3_base_type_enum_to_string()
(in
AntibodyEnumManager
)
hbe_dGDEaRRI_RNAsepother
(in
HBEvalType
)
hbgd_AHD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h3_base_type_string_to_enum()
(in
AntibodyEnumManager
)
hbe_dGDEaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_AHD
(in
rosetta.core.scoring.hbonds
)
H3BaseTypeEnum
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDEaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbgd_AHdist
(in
HBGeoDimType
)
H3BaseTypeEnum_start
(in
rosetta.protocols.antibody
)
hbe_dGDEaRRI_RNAsepPM1
(in
HBEvalType
)
hbgd_AHdist
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3BaseTypeEnum_start
(in
H3BaseTypeEnum
)
hbe_dGDEaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_AHdist
(in
rosetta.core.scoring.hbonds
)
H3BaseTypeEnum_start
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDEaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbgd_chi
(in
HBGeoDimType
)
H3BaseTypeEnum_total
(in
rosetta.protocols.antibody
)
hbe_dGDHaAHX
(in
HBEvalType
)
hbgd_chi
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3BaseTypeEnum_total
(in
H3BaseTypeEnum
)
hbe_dGDHaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_chi
(in
rosetta.core.scoring.hbonds
)
H3BaseTypeEnum_total
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaAHX
(in
rosetta.core.scoring.hbonds
)
hbgd_cosAHD
(in
HBGeoDimType
)
H3CterInsert
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXA
(in
HBEvalType
)
hbgd_cosAHD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3CterInsertAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_cosAHD
(in
rosetta.core.scoring.hbonds
)
H3CterInsertCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXA
(in
rosetta.core.scoring.hbonds
)
hbgd_cosBAH
(in
HBGeoDimType
)
H3PerturbCCD
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXL
(in
HBEvalType
)
hbgd_cosBAH
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3PerturbCCDAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_cosBAH
(in
rosetta.core.scoring.hbonds
)
H3PerturbCCDCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaCXL
(in
rosetta.core.scoring.hbonds
)
hbgd_MAX
(in
HBGeoDimType
)
H3RefineCCD
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaH2O
(in
HBEvalType
)
hbgd_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H3RefineCCDAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_MAX
(in
rosetta.core.scoring.hbonds
)
H3RefineCCDCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaH2O
(in
rosetta.core.scoring.hbonds
)
hbgd_NONE
(in
HBGeoDimType
)
h4
(in
CDRNameEnum
)
hbe_dGDHaHXL
(in
HBEvalType
)
hbgd_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
h4
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbgd_NONE
(in
rosetta.core.scoring.hbonds
)
h4
(in
rosetta.protocols.antibody
)
hbe_dGDHaHXL
(in
rosetta.core.scoring.hbonds
)
HBGeoDimType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H_ALA
(in
rosetta.protocols.match
)
hbe_dGDHaIMD
(in
HBEvalType
)
hbond
(in
ScoreType
)
H_ALA
(in
rosetta.protocols.match._protocols_match_
)
hbe_dGDHaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond
(in
rosetta.core.scoring._core_scoring_
)
H_ALA
(in
ProbeRadius
)
hbe_dGDHaIMD
(in
rosetta.core.scoring.hbonds
)
hbond
(in
rosetta.core.scoring
)
H_ARO
(in
rosetta.protocols.match
)
hbe_dGDHaIME
(in
HBEvalType
)
HBond
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H_ARO
(in
rosetta.protocols.match._protocols_match_
)
hbe_dGDHaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond
(in
rosetta
)
H_ARO
(in
ProbeRadius
)
hbe_dGDHaIME
(in
rosetta.core.scoring.hbonds
)
hbond()
(in
HBondSet
)
H_atom_id()
(in
UpstreamResTypeGeometry
)
hbe_dGDHaPBAsepother
(in
HBEvalType
)
hbond_bb_sc
(in
ScoreType
)
H_chain_last_loop
(in
rosetta.protocols.antibody
)
hbe_dGDHaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_bb_sc
(in
rosetta.core.scoring._core_scoring_
)
H_chain_last_loop
(in
CDRNameEnum
)
hbe_dGDHaPBAsepother
(in
rosetta.core.scoring.hbonds
)
hbond_bb_sc
(in
rosetta.core.scoring
)
H_chain_last_loop
(in
rosetta.protocols.antibody._protocols_antibody_
)
hbe_dGDHaPBAsepPM1
(in
HBEvalType
)
hbond_bb_sc
(in
rosetta
)
H_pos()
(in
ProteinBackboneBuildPoint
)
hbe_dGDHaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_compute_energy()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
H_SS
(in
rosetta.protocols.comparative_modeling.features
)
hbe_dGDHaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbond_cop()
(in
HBondSet
)
H_SS
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
hbe_dGDHaPCA_DNA
(in
HBEvalType
)
hbond_derivs_1way()
(in
HBondEnergy
)
H_SS
(in
SSType
)
hbe_dGDHaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_energy()
(in
SHOBuriedUnsatisfiedPolarsCalculator
)
h_type
(in
OrbitalsLookup
)
hbe_dGDHaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbond_energy_comparer()
(in
HBond
)
HA_atom_id()
(in
UpstreamResTypeGeometry
)
hbe_dGDHaPCA_RNAsepother
(in
HBEvalType
)
hbond_energy_shift()
(in
HBondOptions
)
HA_pos()
(in
ProteinBackboneBuildPoint
)
hbe_dGDHaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_evaluation_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hack_aro
(in
ScoreType
)
hbe_dGDHaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbond_intra
(in
ScoreType
)
hack_aro
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaPCA_RNAsepPM1
(in
HBEvalType
)
hbond_intra
(in
rosetta.core.scoring._core_scoring_
)
hack_aro
(in
rosetta.core.scoring
)
hbe_dGDHaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_intra
(in
rosetta.core.scoring
)
hack_aro
(in
rosetta
)
hbe_dGDHaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbond_intra
(in
rosetta
)
HACK_dump_helices()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
hbe_dGDHaPES_DNA
(in
HBEvalType
)
hbond_lr_bb
(in
ScoreType
)
HACK_dump_helix()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
hbe_dGDHaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_lr_bb
(in
rosetta.core.scoring._core_scoring_
)
hackaro
(in
rosetta.core.scoring
)
hbe_dGDHaPES_DNA
(in
rosetta.core.scoring.hbonds
)
hbond_lr_bb
(in
rosetta.core.scoring
)
HackAroEnergy
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepother
(in
HBEvalType
)
hbond_lr_bb
(in
rosetta
)
HackAroEnergyAP
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_lr_bb_sc
(in
ScoreType
)
HackAroEnergyCAP
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbond_lr_bb_sc
(in
rosetta.core.scoring._core_scoring_
)
HackAroEnergyCreator
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepPM1
(in
HBEvalType
)
hbond_lr_bb_sc
(in
rosetta.core.scoring
)
HackAroEnergyCreatorAP
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_lr_bb_sc
(in
rosetta
)
HackAroEnergyCreatorCAP
(in
rosetta.core.scoring.hackaro._core_scoring_hackaro_
)
hbe_dGDHaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbond_method
(in
EnergyMethods
)
Hairpin
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_DNA
(in
HBEvalType
)
hbond_method
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
HairpinAP
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_method
(in
rosetta.core.scoring.methods
)
HairpinCAP
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbond_options()
(in
HBondSet
)
Hairpins
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_RNAsepother
(in
HBEvalType
)
hbond_options()
(in
EnergyMethodOptions
)
hairpins()
(in
SS_Killhairpins_Info
)
hbe_dGDHaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_res_data
(in
rosetta.core.scoring._core_scoring_
)
HairpinsAP
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbond_res_data
(in
min_single_data
)
HairpinsCAP
(in
rosetta.core.scoring._core_scoring_
)
hbe_dGDHaRRI_RNAsepPM1
(in
HBEvalType
)
hbond_res_data
(in
rosetta.core.scoring
)
half
(in
rosetta.numeric.interpolation.periodic_range
)
hbe_dGDHaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_res_data
(in
rosetta
)
half
(in
rosetta.numeric.interpolation.periodic_range.periodic_value
)
hbe_dGDHaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbond_respair_data
(in
rosetta.core.scoring._core_scoring_
)
halfbin6()
(in
SixDCoordinateBinner
)
hbe_dGUANIDINIUM_EPSILONaAROMATIC_HYDROXYL
(in
HBEvalType
)
hbond_respair_data
(in
min_pair_data
)
halfbin_widths()
(in
SixDCoordinateBinner
)
hbe_dGUANIDINIUM_EPSILONaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_respair_data
(in
rosetta.core.scoring
)
HamiltonianExchange
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbond_respair_data
(in
rosetta
)
HamiltonianExchangeAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaCARBOXAMIDE
(in
HBEvalType
)
hbond_sc
(in
ScoreType
)
HamiltonianExchangeCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_sc
(in
rosetta.core.scoring._core_scoring_
)
HamiltonianExchangeCreator
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hbond_sc
(in
rosetta.core.scoring
)
HamiltonianExchangeCreatorAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaCARBOXYL
(in
HBEvalType
)
hbond_sc
(in
rosetta
)
HamiltonianExchangeCreatorCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
hbe_dGUANIDINIUM_EPSILONaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_sr_bb
(in
ScoreType
)
handle_function_expression()
(in
BooleanExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hbond_sr_bb
(in
rosetta.core.scoring._core_scoring_
)
handle_function_expression()
(in
ExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaHYDROXYL
(in
HBEvalType
)
hbond_sr_bb
(in
rosetta.core.scoring
)
handle_function_expression()
(in
SimpleExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_sr_bb
(in
rosetta
)
handle_function_expression()
(in
WrappedOptEExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbond_sr_bb_sc
(in
ScoreType
)
handle_function_expression()
(in
EntityFuncExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_DELTA
(in
HBEvalType
)
hbond_sr_bb_sc
(in
rosetta.core.scoring._core_scoring_
)
handle_function_expression()
(in
VectorExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbond_sr_bb_sc
(in
rosetta.core.scoring
)
handle_interrupt()
(in
MSDJobDistributor
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
hbond_sr_bb_sc
(in
rosetta
)
handle_variable_expression()
(in
BooleanExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_EPSILON
(in
HBEvalType
)
HBondAcceptorFilter
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handle_variable_expression()
(in
ExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondAcceptorFilterAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handle_variable_expression()
(in
SimpleExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
HBondAcceptorFilterCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handle_variable_expression()
(in
WrappedOptEExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
HBondAcceptorFilterCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handle_variable_expression()
(in
EntityFuncExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondAcceptorFilterCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handle_variable_expression()
(in
VectorExpressionCreator
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
HBondAcceptorFilterCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
handles_metric_value()
(in
rosetta.basic._basic_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
HBondAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hankel
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_free()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HBondDatabase
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_get_p0()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
HBondDatabaseAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_get_rc()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondDatabaseCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_in_machine()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HBondDerivs
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_make_input()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
HBondDerivsAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_make_j()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondDerivsCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hankel_make_rp()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
HBondDonorFilter
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hankel_make_snn()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
HBondDonorFilterAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hankel_r_div()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondDonorFilterCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hankel_r_mult()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HBondDonorFilterCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hankel_set_alpha()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
HBondDonorFilterCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hankel_trans_no_lec()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondDonorFilterCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
HankelAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HBondEnergy
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HankelCAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
HBondEnergyAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hard_crossover()
(in
TrieCountPairGeneric
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondEnergyCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HarmonicFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
HBondEnergyCreator
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HarmonicFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
HBondEnergyCreatorAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HarmonicFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondEnergyCreatorCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Haro_index()
(in
ResidueType
)
hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
HBondFeatures
(in
rosetta.protocols.features._protocols_features_
)
Haro_index()
(in
Residue
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_DNA
(in
HBEvalType
)
HBondFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
Haro_scOrbH
(in
OrbitalsLookup
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
Haro_scOrbH
(in
h_type
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
HBondFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
DataCache_T_basic_datacache_CacheableData_T
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
HBondFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
DataMap
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
WriteableCacheableMap
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HBondOptions
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
ResidueType
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
HBondOptionsAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
rosetta.core.chemical._core_chemical_
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondOptionsCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HBondParameterFeatures
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
Residue
)
hbe_dGUANIDINIUM_EPSILONaWATER
(in
HBEvalType
)
HBondParameterFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
AtomID_Map_T_bool_T
)
hbe_dGUANIDINIUM_EPSILONaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondParameterFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
AtomID_Map_T_core_id_AtomID_T
)
hbe_dGUANIDINIUM_EPSILONaWATER
(in
rosetta.core.scoring.hbonds
)
HBondParameterFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
AtomID_Map_T_double_T
)
hbe_dH2OaAHX
(in
HBEvalType
)
HBondParameterFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
hbe_dH2OaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondParameterFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
has()
(in
BondID
)
hbe_dH2OaAHX
(in
rosetta.core.scoring.hbonds
)
hbonds
(in
rosetta.core.scoring
)
has()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_T
)
hbe_dH2OaCXA
(in
HBEvalType
)
HBondSet
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
AtomTree
)
hbe_dH2OaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondSetAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
RotamerLinks
)
hbe_dH2OaCXA
(in
rosetta.core.scoring.hbonds
)
HBondSetCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has()
(in
ResidueConstraints
)
hbe_dH2OaCXL
(in
HBEvalType
)
HbondsToAtomFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has()
(in
Loops
)
hbe_dH2OaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HbondsToAtomFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_algorithm()
(in
BuildSet
)
hbe_dH2OaCXL
(in
rosetta.core.scoring.hbonds
)
HbondsToAtomFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_job()
(in
StepWiseCSA_JobDistributor
)
hbe_dH2OaH2O
(in
HBEvalType
)
HbondsToAtomFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_job()
(in
StepWiseJobDistributor
)
hbe_dH2OaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HbondsToAtomFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_job()
(in
StepWiseMonteCarloJobDistributor
)
hbe_dH2OaH2O
(in
rosetta.core.scoring.hbonds
)
HbondsToAtomFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
ExtendedPoseInputStream
)
hbe_dH2OaHXL
(in
HBEvalType
)
HbondsToResidueFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
LazySilentFilePoseInputStream
)
hbe_dH2OaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HbondsToResidueFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
MetaPoseInputStream
)
hbe_dH2OaHXL
(in
rosetta.core.scoring.hbonds
)
HbondsToResidueFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
PDBPoseInputStream
)
hbe_dH2OaIMD
(in
HBEvalType
)
HbondsToResidueFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
PoseInputStream
)
hbe_dH2OaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HbondsToResidueFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
SilentFilePoseInputStream
)
hbe_dH2OaIMD
(in
rosetta.core.scoring.hbonds
)
HbondsToResidueFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
has_another_pose()
(in
InputStreamWithResidueInfo
)
hbe_dH2OaIME
(in
HBEvalType
)
HBondTypeManager
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_atom()
(in
AtomTypeSet
)
hbe_dH2OaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBondTypeManagerAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_atom()
(in
CSTalosIO
)
hbe_dH2OaIME
(in
rosetta.core.scoring.hbonds
)
HBondTypeManagerCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_atom()
(in
AtomBasedConstraintsScore
)
hbe_dH2OaPBA
(in
HBEvalType
)
HBondWeightType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_atom_info()
(in
Edge
)
hbe_dH2OaPBA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBPoly1D_from_name()
(in
HBondDatabase
)
has_behavior()
(in
PackerTask
)
hbe_dH2OaPBA
(in
rosetta.core.scoring.hbonds
)
hbs
(in
rosetta.protocols.simple_moves
)
has_behavior()
(in
PackerTask_
)
hbe_dH2OaPCA_DNA
(in
HBEvalType
)
HBS_POST
(in
rosetta
)
has_behavior()
(in
ResidueLevelTask
)
hbe_dH2OaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBS_POST
(in
rosetta.core.chemical
)
has_behavior()
(in
ResidueLevelTask_
)
hbe_dH2OaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
HBS_POST
(in
rosetta.core.chemical._core_chemical_
)
has_branch()
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
hbe_dH2OaPCA_RNA
(in
HBEvalType
)
HBS_POST
(in
VariantType
)
has_bulge()
(in
StrandPairing
)
hbe_dH2OaPCA_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBS_PRE
(in
rosetta
)
has_C_atom()
(in
UpstreamResTypeGeometry
)
hbe_dH2OaPCA_RNA
(in
rosetta.core.scoring.hbonds
)
HBS_PRE
(in
rosetta.core.chemical
)
has_CA_atom()
(in
UpstreamResTypeGeometry
)
hbe_dH2OaPES_DNA
(in
HBEvalType
)
HBS_PRE
(in
rosetta.core.chemical._core_chemical_
)
has_cache()
(in
PBLifetimeCache
)
hbe_dH2OaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HBS_PRE
(in
VariantType
)
has_CB_atom()
(in
UpstreamResTypeGeometry
)
hbe_dH2OaPES_DNA
(in
rosetta.core.scoring.hbonds
)
HBSeqSep
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_CDR()
(in
AntibodyInfo
)
hbe_dH2OaPES_RNA
(in
HBEvalType
)
HbsPatcher
(in
rosetta.protocols.simple_moves.hbs._protocols_simple_moves_hbs_
)
has_chain()
(in
rosetta.core.pose._core_pose_
)
hbe_dH2OaPES_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HbsPatcherAP
(in
rosetta.protocols.simple_moves.hbs._protocols_simple_moves_hbs_
)
has_chainbreak()
(in
ChainbreakUtil
)
hbe_dH2OaPES_RNA
(in
rosetta.core.scoring.hbonds
)
HbsPatcherCAP
(in
rosetta.protocols.simple_moves.hbs._protocols_simple_moves_hbs_
)
has_chemical_shifts()
(in
VallResidue
)
hbe_dH2OaRRI_DNA
(in
HBEvalType
)
hbtrie
(in
rosetta.core.scoring.hbonds
)
has_cluster_for_cdr()
(in
AntibodyInfo
)
hbe_dH2OaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_LR_BB
(in
HBondWeightType
)
has_comment()
(in
SilentStruct
)
hbe_dH2OaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbw_LR_BB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_common_pairing()
(in
StrandPairing
)
hbe_dH2OaRRI_RNA
(in
HBEvalType
)
hbw_LR_BB
(in
rosetta.core.scoring.hbonds
)
has_constraints()
(in
ConstraintSet
)
hbe_dH2OaRRI_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_LR_BB_SC
(in
HBondWeightType
)
has_constraints()
(in
Template
)
hbe_dH2OaRRI_RNA
(in
rosetta.core.scoring.hbonds
)
hbw_LR_BB_SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_conventional_residue()
(in
FullModelParameters
)
hbe_dHXLaAHX
(in
HBEvalType
)
hbw_LR_BB_SC
(in
rosetta.core.scoring.hbonds
)
has_coordinates()
(in
BBTorsionSRFD
)
hbe_dHXLaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_MAX
(in
HBondWeightType
)
has_custom_variant_types()
(in
ResidueProperties
)
hbe_dHXLaAHX
(in
rosetta.core.scoring.hbonds
)
hbw_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_cut()
(in
FoldTreeSketch
)
hbe_dHXLaCXA
(in
HBEvalType
)
hbw_MAX
(in
rosetta.core.scoring.hbonds
)
has_dependencies()
(in
BuildInstruction
)
hbe_dHXLaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_NONE
(in
HBondWeightType
)
has_dof()
(in
SymDof
)
hbe_dHXLaCXA
(in
rosetta.core.scoring.hbonds
)
hbw_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_dof()
(in
Pose
)
hbe_dHXLaCXL
(in
HBEvalType
)
hbw_NONE
(in
rosetta.core.scoring.hbonds
)
has_dof_constraints()
(in
ConstraintSet
)
hbe_dHXLaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_SC
(in
HBondWeightType
)
has_domain()
(in
AllowInsert
)
hbe_dHXLaCXL
(in
rosetta.core.scoring.hbonds
)
hbw_SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_energy()
(in
SilentStruct
)
hbe_dHXLaH2O
(in
HBEvalType
)
hbw_SC
(in
rosetta.core.scoring.hbonds
)
has_energy_method()
(in
ScoringManager
)
hbe_dHXLaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_SR_BB
(in
HBondWeightType
)
has_entry()
(in
CSTalosIO
)
hbe_dHXLaH2O
(in
rosetta.core.scoring.hbonds
)
hbw_SR_BB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_entry()
(in
PhiPsiTalosIO
)
hbe_dHXLaHXL
(in
HBEvalType
)
hbw_SR_BB
(in
rosetta.core.scoring.hbonds
)
has_evaluator()
(in
EvaluatedArchive
)
hbe_dHXLaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbw_SR_BB_SC
(in
HBondWeightType
)
has_exclude_residues_vector()
(in
PCS_Energy_parameters_manager
)
hbe_dHXLaHXL
(in
rosetta.core.scoring.hbonds
)
hbw_SR_BB_SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
has_exclude_residues_vector()
(in
PCS_Energy_parameters_manager_Ts1
)
hbe_dHXLaIMD
(in
HBEvalType
)
hbw_SR_BB_SC
(in
rosetta.core.scoring.hbonds
)
has_exclude_residues_vector()
(in
PCS_Energy_parameters_manager_Ts2
)
hbe_dHXLaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
head_of_queue()
(in
recent_history_queue
)
has_exclude_residues_vector()
(in
PCS_Energy_parameters_manager_Ts3
)
hbe_dHXLaIMD
(in
rosetta.core.scoring.hbonds
)
header_from_atom_tree_diff()
(in
rosetta.core.import_pose.atom_tree_diffs._core_import_pose_atom_tree_diffs_
)
has_exclude_residues_vector()
(in
PCS_Energy_parameters_manager_Ts4
)
hbe_dHXLaIME
(in
HBEvalType
)
header_information()
(in
FileData
)
has_exclude_residues_vector_changed()
(in
PCS_Energy_parameters_manager
)
hbe_dHXLaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
header_information()
(in
PDBInfo
)
has_exclude_residues_vector_changed()
(in
PCS_Energy_parameters_manager_Ts1
)
hbe_dHXLaIME
(in
rosetta.core.scoring.hbonds
)
HeaderInformation
(in
rosetta.core.io.pdb._core_io_pdb_
)
has_exclude_residues_vector_changed()
(in
PCS_Energy_parameters_manager_Ts2
)
hbe_dHXLaPBAsepother
(in
HBEvalType
)
HeaderInformationAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
has_exclude_residues_vector_changed()
(in
PCS_Energy_parameters_manager_Ts3
)
hbe_dHXLaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeaderInformationCAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
has_exclude_residues_vector_changed()
(in
PCS_Energy_parameters_manager_Ts4
)
hbe_dHXLaPBAsepother
(in
rosetta.core.scoring.hbonds
)
heap
(in
rosetta.utility._utility_
)
has_exocyclic_linkage()
(in
CarbohydrateInfo
)
hbe_dHXLaPBAsepPM1
(in
HBEvalType
)
heap_down()
(in
rosetta.protocols.frags._protocols_frags_
)
has_extra_parameter()
(in
AtomTypeSet
)
hbe_dHXLaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heap_extract()
(in
rosetta.protocols.frags._protocols_frags_
)
has_fallback_for_resource()
(in
FallbackConfigurationFactory
)
hbe_dHXLaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
heap_extract()
(in
heap
)
has_finished()
(in
Batch
)
hbe_dHXLaPCA_DNA
(in
HBEvalType
)
heap_head()
(in
heap
)
has_framework_dependant_cluster()
(in
MutateFrameworkForCluster
)
hbe_dHXLaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heap_init()
(in
rosetta.protocols.frags._protocols_frags_
)
has_framework_dependant_clusters()
(in
MutateFrameworkForCluster
)
hbe_dHXLaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
heap_insert()
(in
rosetta.protocols.frags._protocols_frags_
)
has_H_atom()
(in
UpstreamResTypeGeometry
)
hbe_dHXLaPCA_RNAsepother
(in
HBEvalType
)
heap_insert()
(in
heap
)
has_HA_atom()
(in
UpstreamResTypeGeometry
)
hbe_dHXLaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heap_replace()
(in
rosetta.protocols.frags._protocols_frags_
)
has_incomplete_connection()
(in
Residue
)
hbe_dHXLaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
heap_replace()
(in
heap
)
has_incomplete_connections()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbe_dHXLaPCA_RNAsepPM1
(in
HBEvalType
)
heap_up()
(in
rosetta.protocols.frags._protocols_frags_
)
has_intra_residue_constraints()
(in
ConstraintSet
)
hbe_dHXLaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heapAP
(in
rosetta.utility._utility_
)
has_job_options()
(in
LazyResourceManager
)
hbe_dHXLaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
heapCAP
(in
rosetta.utility._utility_
)
has_jump()
(in
FoldTreeSketch
)
hbe_dHXLaPES_DNA
(in
HBEvalType
)
heat_after_cycles()
(in
MonteCarlo
)
has_jump_access()
(in
DofPassport
)
hbe_dHXLaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Heat_ConvergenceCheck
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
has_just_simple_cycles()
(in
LoopGraph
)
hbe_dHXLaPES_DNA
(in
rosetta.core.scoring.hbonds
)
Heat_ConvergenceCheckAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
has_lb_function()
(in
Interpolator
)
hbe_dHXLaPES_RNAsepother
(in
HBEvalType
)
Heat_ConvergenceCheckCAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
has_lower_connect()
(in
Residue
)
hbe_dHXLaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavy_atom_with_hydrogens()
(in
ResidueType
)
has_method_weights()
(in
EnergyMethodOptions
)
hbe_dHXLaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
heavy_atom_with_polar_hydrogens()
(in
ResidueType
)
has_model()
(in
PairingStatEntry
)
hbe_dHXLaPES_RNAsepPM1
(in
HBEvalType
)
heavy_atoms()
(in
ResidueType
)
has_N_atom()
(in
UpstreamResTypeGeometry
)
hbe_dHXLaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyatom_has_polar_hydrogens()
(in
Atom
)
has_name()
(in
ResidueTypeSet
)
hbe_dHXLaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
heavyatom_has_polar_hydrogens()
(in
ResidueType
)
has_name3()
(in
ResidueTypeSet
)
hbe_dHXLaRRI_DNA
(in
HBEvalType
)
heavyatom_has_polar_hydrogens()
(in
Residue
)
has_next_level()
(in
HierarchicalLevel
)
hbe_dHXLaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyatom_heavyatom_energy()
(in
FA_ElecEnergy
)
has_non_residue_pair_constraints()
(in
ConstraintSet
)
hbe_dHXLaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
heavyatom_heavyatom_energy()
(in
AnalyticEtableEvaluator
)
has_nonzero_weight()
(in
ScoreFunction
)
hbe_dHXLaRRI_RNAsepother
(in
HBEvalType
)
heavyatom_heavyatom_energy()
(in
TableLookupEvaluator
)
has_nth_pose()
(in
FastaInputter
)
hbe_dHXLaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyatom_heavyatom_energy()
(in
HBondEnergy
)
has_nth_pose()
(in
Inputter
)
hbe_dHXLaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
heavyatom_heavyatom_energy()
(in
MMLJEnergyInter
)
has_nth_pose()
(in
PDBInputter
)
hbe_dHXLaRRI_RNAsepPM1
(in
HBEvalType
)
heavyatom_hydrogenatom_energy()
(in
FA_ElecEnergy
)
has_nth_pose()
(in
SilentFileInputter
)
hbe_dHXLaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyatom_hydrogenatom_energy()
(in
AnalyticEtableEvaluator
)
has_O_atom()
(in
UpstreamResTypeGeometry
)
hbe_dHXLaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
heavyatom_hydrogenatom_energy()
(in
TableLookupEvaluator
)
has_open_slaves()
(in
SingleFileBuffer
)
hbe_dHYDROXYLaAROMATIC_HYDROXYL
(in
HBEvalType
)
heavyatom_hydrogenatom_energy()
(in
HBondEnergy
)
has_option()
(in
JobOptions
)
hbe_dHYDROXYLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyatom_hydrogenatom_energy()
(in
MMLJEnergyInter
)
has_option()
(in
ResourceManager
)
hbe_dHYDROXYLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
heavyatom_is_an_acceptor()
(in
ResidueType
)
has_option()
(in
JD2ResourceManager
)
hbe_dHYDROXYLaCARBOXAMIDE
(in
HBEvalType
)
heavyatom_is_an_acceptor()
(in
Residue
)
has_orbital()
(in
ResidueType
)
hbe_dHYDROXYLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeavyAtomFilter
(in
rosetta.core.chemical._core_chemical_
)
has_orbitals()
(in
Atom
)
hbe_dHYDROXYLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
HeavyAtomFilter
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_orientation_and_pleating()
(in
rosetta.core.scoring.dssp._core_scoring_dssp_
)
hbe_dHYDROXYLaCARBOXYL
(in
HBEvalType
)
HeavyAtomFilterAP
(in
rosetta.core.chemical._core_chemical_
)
has_orientation_and_pleating()
(in
JumpSample
)
hbe_dHYDROXYLaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeavyAtomFilterAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_pairing()
(in
StrandPairing
)
hbe_dHYDROXYLaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
HeavyAtomFilterCAP
(in
rosetta.core.chemical._core_chemical_
)
has_pairing()
(in
StrandPairingSet
)
hbe_dHYDROXYLaHYDROXYL
(in
HBEvalType
)
HeavyAtomFilterCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_pairings()
(in
Templates
)
hbe_dHYDROXYLaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeavyAtomFilterCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_parent_remark()
(in
SilentStruct
)
hbe_dHYDROXYLaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
HeavyAtomFilterCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_passport()
(in
Conformation
)
hbe_dHYDROXYLaIMIDAZOL_DELTA
(in
HBEvalType
)
HeavyAtomFilterCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
has_passport()
(in
SymmetricConformation
)
hbe_dHYDROXYLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
heavyAtoms_end()
(in
Residue
)
has_path()
(in
Motif
)
hbe_dHYDROXYLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
HeavyAtomWithHydrogensFilter
(in
rosetta.core.chemical._core_chemical_
)
has_pose()
(in
InputterStream
)
hbe_dHYDROXYLaIMIDAZOL_EPSILON
(in
HBEvalType
)
HeavyAtomWithHydrogensFilterAP
(in
rosetta.core.chemical._core_chemical_
)
has_precomputed_move()
(in
PrecomputedLibraryMover
)
hbe_dHYDROXYLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeavyAtomWithHydrogensFilterCAP
(in
rosetta.core.chemical._core_chemical_
)
has_profile()
(in
VallResidue
)
hbe_dHYDROXYLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
HeavyAtomWithPolarHydrogensFilter
(in
rosetta.core.chemical._core_chemical_
)
has_profile()
(in
VallResidue
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
HeavyAtomWithPolarHydrogensFilterAP
(in
rosetta.core.chemical._core_chemical_
)
has_profile_struct()
(in
VallResidue
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HeavyAtomWithPolarHydrogensFilterCAP
(in
rosetta.core.chemical._core_chemical_
)
has_property()
(in
ResidueProperties
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
HedgeArchive
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
has_property()
(in
ResidueType
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
HedgeArchiveAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
has_property()
(in
Residue
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HedgeArchiveCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
has_property()
(in
BinTransitionData
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
helical_bundle
(in
rosetta.protocols
)
has_pseudobonds()
(in
CPDataCorrespondence
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
HelicalFragment
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_range1()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelicalFragmentAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_range1_lower()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HelicalFragmentCAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_range1_upper()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
HelicalGaussianMover
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
has_range2()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelicalGaussianMoverAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
has_range2_lower()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
HelicalGaussianMoverCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
has_range2_upper()
(in
SymDof
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
Helices
(in
rosetta.core.scoring._core_scoring_
)
has_reactivities()
(in
RNA_DataReader
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helices()
(in
SS_Info
)
has_ref_pose()
(in
AtomTreeDiff
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
helices()
(in
SS_Info2
)
has_ref_tag()
(in
AtomTreeDiff
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
HelicesAP
(in
rosetta.core.scoring._core_scoring_
)
has_remark()
(in
Motif
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelicesCAP
(in
rosetta.core.scoring._core_scoring_
)
has_residue_pair_constraints()
(in
ConstraintSet
)
hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
Helix
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
has_residue_type_set()
(in
ChemicalManager
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
helix
(in
SecondaryStructureType
)
has_resnum()
(in
ResidueAlternativeStepWiseSamplerComb
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
has_resource()
(in
LazyResourceManager
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
helix
(in
rosetta.protocols.loops.loop_closure.ccd
)
has_resource()
(in
ResourceManager
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
helix
(in
rosetta.protocols.stepwise.modeler.rna
)
has_resource_configuration()
(in
LazyResourceManager
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix()
(in
BetaAlphaBetaMotif
)
has_resource_loader()
(in
ResourceLoaderFactory
)
hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
helix()
(in
HSSTriplet
)
has_resource_locator()
(in
LazyResourceManager
)
hbe_dHYDROXYLaRIBOSE_RING_DNA
(in
HBEvalType
)
helix()
(in
SS_Info2
)
has_resource_options()
(in
LazyResourceManager
)
hbe_dHYDROXYLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix()
(in
MakeBundle
)
has_resource_tag_by_job_tag()
(in
LazyResourceManager
)
hbe_dHYDROXYLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
helix_capper
(in
rosetta.protocols
)
has_resource_with_description()
(in
ResourceManager
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
helix_cop()
(in
MakeBundle
)
has_resource_with_description()
(in
JD2ResourceManager
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix_cycle()
(in
BetaAlphaBetaMotif
)
has_restype()
(in
BuildSet
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
helix_cycle_as_string()
(in
BetaAlphaBetaMotif
)
has_sc_orbitals()
(in
ResidueType
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
helix_fraction()
(in
SecondaryStructure
)
has_sc_orbitals()
(in
Residue
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix_id()
(in
MembraneTopology
)
has_score()
(in
MultiObjective
)
hbe_dHYDROXYLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
helix_id()
(in
SS_Info2
)
has_segment()
(in
BackrubMover
)
hbe_dHYDROXYLaWATER
(in
HBEvalType
)
helix_index()
(in
PerturbBundleOptions
)
has_seq_label()
(in
SequenceAnnotation
)
hbe_dHYDROXYLaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix_length()
(in
MakeBundleHelix
)
has_severe_pep_bond_geom_issues()
(in
rosetta.protocols.loops._protocols_loops_
)
hbe_dHYDROXYLaWATER
(in
rosetta.core.scoring.hbonds
)
helix_pairing()
(in
HelixPairingSet
)
has_shared_silent_data()
(in
SilentFileData
)
hbe_dIMDaAHX
(in
HBEvalType
)
helix_pairings()
(in
HelixPairingFilter
)
has_silent_in()
(in
Batch
)
hbe_dIMDaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helix_pairings()
(in
HelixPairingSet
)
has_silent_struct_type()
(in
SilentStructFactory
)
hbe_dIMDaAHX
(in
rosetta.core.scoring.hbonds
)
helix_pairings()
(in
BluePrint
)
has_tag()
(in
AtomTreeDiff
)
hbe_dIMDaCXA
(in
HBEvalType
)
HelixAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
has_tag()
(in
SilentFileData
)
hbe_dIMDaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helixAssembly
(in
rosetta.protocols.features
)
has_task()
(in
STMStoredTask
)
hbe_dIMDaCXA
(in
rosetta.core.scoring.hbonds
)
HelixBundleFeatures
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_template()
(in
Templates
)
hbe_dIMDaCXL
(in
HBEvalType
)
HelixBundleFeaturesAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_type()
(in
ResFilterFactory
)
hbe_dIMDaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixBundleFeaturesCAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_type()
(in
ResLvlTaskOperationFactory
)
hbe_dIMDaCXL
(in
rosetta.core.scoring.hbonds
)
HelixBundleFeaturesCreator
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_type()
(in
TaskOperationFactory
)
hbe_dIMDaH2O
(in
HBEvalType
)
HelixBundleFeaturesCreatorAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_type()
(in
ResidueSelectorFactory
)
hbe_dIMDaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixBundleFeaturesCreatorCAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
has_type()
(in
LoopsDefinerFactory
)
hbe_dIMDaH2O
(in
rosetta.core.scoring.hbonds
)
HelixCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
has_ub_function()
(in
Interpolator
)
hbe_dIMDaHXL
(in
HBEvalType
)
HelixCapFeatures
(in
rosetta.protocols.features._protocols_features_
)
has_upper_connect()
(in
Residue
)
hbe_dIMDaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixCapFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
has_upstream_only_geomcsts()
(in
Matcher
)
hbe_dIMDaHXL
(in
rosetta.core.scoring.hbonds
)
HelixCapFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
has_valid_moves()
(in
ChunkTrialMover
)
hbe_dIMDaIMD
(in
HBEvalType
)
HelixCapFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
has_value()
(in
BasePairStepLibrary
)
hbe_dIMDaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixCapFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
has_value()
(in
vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__T
)
hbe_dIMDaIMD
(in
rosetta.core.scoring.hbonds
)
HelixCapFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
has_value()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
hbe_dIMDaIME
(in
HBEvalType
)
helixjump_picks()
(in
Templates
)
has_variant_type()
(in
ResidueType
)
hbe_dIMDaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixKinkFilter
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
has_variant_type()
(in
Residue
)
hbe_dIMDaIME
(in
rosetta.core.scoring.hbonds
)
HelixKinkFilterAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
has_virtual_rna_residue_variant_type()
(in
rosetta.core.pose.rna._core_pose_rna_
)
hbe_dIMDaPBAsepother
(in
HBEvalType
)
HelixKinkFilterCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
has_waters()
(in
LKB_ResidueInfo
)
hbe_dIMDaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixKinkFilterCreator
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
has_zero_weight()
(in
ScoreFunction
)
hbe_dIMDaPBAsepother
(in
rosetta.core.scoring.hbonds
)
HelixKinkFilterCreatorAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hASA_patch_energy()
(in
SurfacePotential
)
hbe_dIMDaPBAsepPM1
(in
HBEvalType
)
HelixKinkFilterCreatorCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hash()
(in
AutoCutData
)
hbe_dIMDaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixNCapperMover
(in
rosetta.protocols.helix_capper._protocols_helix_capper_
)
hash()
(in
EntityElement
)
hbe_dIMDaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
HelixNCapperMoverAP
(in
rosetta.protocols.helix_capper._protocols_helix_capper_
)
hash64()
(in
xyzTransform_T_double_T
)
hbe_dIMDaPCA_DNA
(in
HBEvalType
)
HelixNCapperMoverCAP
(in
rosetta.protocols.helix_capper._protocols_helix_capper_
)
hash64()
(in
xyzTransform_T_float_T
)
hbe_dIMDaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixPairing
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hash_sizes()
(in
LoopHashLibrary
)
hbe_dIMDaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
HelixPairingAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hash_to_labal()
(in
ResPairMotifMetaBinner
)
hbe_dIMDaPCA_RNAsepother
(in
HBEvalType
)
HelixPairingCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hash_value()
(in
FoldTree
)
hbe_dIMDaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixPairingFilter
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hash_value()
(in
StrandPairing
)
hbe_dIMDaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HelixPairingFilterAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hash_value()
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
hbe_dIMDaPCA_RNAsepPM1
(in
HBEvalType
)
HelixPairingFilterCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hasher()
(in
MotifHash
)
hbe_dIMDaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixPairingFilterCreator
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hashing
(in
rosetta.numeric.geometry
)
hbe_dIMDaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HelixPairingFilterCreatorAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hasOption()
(in
Tag
)
hbe_dIMDaPES_DNA
(in
HBEvalType
)
HelixPairingFilterCreatorCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hasPoseExtraScore()
(in
rosetta.core.pose._core_pose_
)
hbe_dIMDaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixPairingSet
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hasTag()
(in
Tag
)
hbe_dIMDaPES_DNA
(in
rosetta.core.scoring.hbonds
)
HelixPairingSetAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
have_motif_set_named()
(in
MotifHashManager
)
hbe_dIMDaPES_RNAsepother
(in
HBEvalType
)
HelixPairingSetCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
have_motifs()
(in
MotifHashManager
)
hbe_dIMDaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HelixScore
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
have_mutated_residue()
(in
JumpRotamerSidechainMover
)
hbe_dIMDaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HelixScoreAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
have_mutated_residue()
(in
PerturbChiSidechainMover
)
hbe_dIMDaPES_RNAsepPM1
(in
HBEvalType
)
HelixScoreCAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
have_mutated_residue()
(in
PerturbRotamerSidechainMover
)
hbe_dIMDaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
helper()
(in
AngleConstraint
)
have_mutated_residue()
(in
SidechainMoverBase
)
hbe_dIMDaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hetero_atom_line()
(in
CavityBall
)
have_params()
(in
HolesParams
)
hbe_dIMDaRRI_DNA
(in
HBEvalType
)
HIERARCHICAL_ADD
(in
rosetta.basic
)
have_params()
(in
HolesParamsRes
)
hbe_dIMDaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_ADD
(in
rosetta.basic._basic_
)
havesurf()
(in
PoseBalls
)
hbe_dIMDaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_ADD
(in
ProfTag
)
hb_acc_chem_type()
(in
HBAtom
)
hbe_dIMDaRRI_RNAsepother
(in
HBEvalType
)
HIERARCHICAL_ADD_ELEM_TO_CACHE
(in
rosetta.basic
)
hb_bb()
(in
ResPairMotif
)
hbe_dIMDaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_ADD_ELEM_TO_CACHE
(in
rosetta.basic._basic_
)
hb_bb_sc()
(in
ResPairMotif
)
hbe_dIMDaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_ADD_ELEM_TO_CACHE
(in
ProfTag
)
hb_chem_type()
(in
HBAtom
)
hbe_dIMDaRRI_RNAsepPM1
(in
HBEvalType
)
HIERARCHICAL_EVALUATE
(in
rosetta.basic
)
hb_don_chem_type()
(in
HBAtom
)
hbe_dIMDaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_EVALUATE
(in
rosetta.basic._basic_
)
hb_energy_deriv()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMDaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_EVALUATE
(in
ProfTag
)
hb_energy_deriv_u()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaAHX
(in
HBEvalType
)
HIERARCHICAL_FIND
(in
rosetta.basic
)
hb_energy_deriv_u2()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_FIND
(in
rosetta.basic._basic_
)
hb_eval_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaAHX
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_FIND
(in
ProfTag
)
hb_eval_type_weight()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaCXA
(in
HBEvalType
)
HIERARCHICAL_FIND_ADDRESS
(in
rosetta.basic
)
hb_sc()
(in
ResPairMotif
)
hbe_dIMEaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_FIND_ADDRESS
(in
rosetta.basic._basic_
)
hbacc_AHX
(in
HBAccChemType
)
hbe_dIMEaCXA
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_FIND_ADDRESS
(in
ProfTag
)
hbacc_AHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaCXL
(in
HBEvalType
)
HIERARCHICAL_POOL_SIZE
(in
rosetta.basic
)
hbacc_AHX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_POOL_SIZE
(in
rosetta.basic._basic_
)
hbacc_CXA
(in
HBAccChemType
)
hbe_dIMEaCXL
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_POOL_SIZE
(in
ProfTag
)
hbacc_CXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaH2O
(in
HBEvalType
)
HIERARCHICAL_ROUND
(in
rosetta.basic
)
hbacc_CXA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_ROUND
(in
rosetta.basic._basic_
)
hbacc_CXL
(in
HBAccChemType
)
hbe_dIMEaH2O
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_ROUND
(in
ProfTag
)
hbacc_CXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaHXL
(in
HBEvalType
)
HIERARCHICAL_SORT_ADDRESSES
(in
rosetta.basic
)
hbacc_CXL
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHICAL_SORT_ADDRESSES
(in
rosetta.basic._basic_
)
hbacc_GENERIC_RINGBB
(in
HBAccChemType
)
hbe_dIMEaHXL
(in
rosetta.core.scoring.hbonds
)
HIERARCHICAL_SORT_ADDRESSES
(in
ProfTag
)
hbacc_GENERIC_RINGBB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaIMD
(in
HBEvalType
)
HierarchicalDataMap
(in
rosetta.basic.datacache._basic_datacache_
)
hbacc_GENERIC_RINGBB
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HierarchicalDataMapAP
(in
rosetta.basic.datacache._basic_datacache_
)
hbacc_GENERIC_RINGSC
(in
HBAccChemType
)
hbe_dIMEaIMD
(in
rosetta.core.scoring.hbonds
)
HierarchicalDataMapCAP
(in
rosetta.basic.datacache._basic_datacache_
)
hbacc_GENERIC_RINGSC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaIME
(in
HBEvalType
)
HierarchicalLevel
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbacc_GENERIC_RINGSC
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HierarchicalLevelAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbacc_GENERIC_SP2BB
(in
HBAccChemType
)
hbe_dIMEaIME
(in
rosetta.core.scoring.hbonds
)
HierarchicalLevelCAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbacc_GENERIC_SP2BB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPBAsepother
(in
HBEvalType
)
HIERARCHY_FIND_ADDRESS
(in
rosetta.basic
)
hbacc_GENERIC_SP2BB
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHY_FIND_ADDRESS
(in
rosetta.basic._basic_
)
hbacc_GENERIC_SP2SC
(in
HBAccChemType
)
hbe_dIMEaPBAsepother
(in
rosetta.core.scoring.hbonds
)
HIERARCHY_FIND_ADDRESS
(in
ProfTag
)
hbacc_GENERIC_SP2SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPBAsepPM1
(in
HBEvalType
)
HIERARCHY_GET_NEXT_CANDIDATE
(in
rosetta.basic
)
hbacc_GENERIC_SP2SC
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHY_GET_NEXT_CANDIDATE
(in
rosetta.basic._basic_
)
hbacc_GENERIC_SP3BB
(in
HBAccChemType
)
hbe_dIMEaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
HIERARCHY_GET_NEXT_CANDIDATE
(in
ProfTag
)
hbacc_GENERIC_SP3BB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPCA_DNA
(in
HBEvalType
)
HIERARCHY_RECV_COORDS
(in
rosetta.basic
)
hbacc_GENERIC_SP3BB
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHY_RECV_COORDS
(in
rosetta.basic._basic_
)
hbacc_GENERIC_SP3SC
(in
HBAccChemType
)
hbe_dIMEaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
HIERARCHY_RECV_COORDS
(in
ProfTag
)
hbacc_GENERIC_SP3SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPCA_RNAsepother
(in
HBEvalType
)
HIERARCHY_SEND_COORDS
(in
rosetta.basic
)
hbacc_GENERIC_SP3SC
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHY_SEND_COORDS
(in
rosetta.basic._basic_
)
hbacc_H2O
(in
HBAccChemType
)
hbe_dIMEaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HIERARCHY_SEND_COORDS
(in
ProfTag
)
hbacc_H2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPCA_RNAsepPM1
(in
HBEvalType
)
HIERARCHY_SETUP_TO_RECV
(in
rosetta.basic
)
hbacc_H2O
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HIERARCHY_SETUP_TO_RECV
(in
rosetta.basic._basic_
)
hbacc_HXL
(in
HBAccChemType
)
hbe_dIMEaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HIERARCHY_SETUP_TO_RECV
(in
ProfTag
)
hbacc_HXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPES_DNA
(in
HBEvalType
)
high_temp()
(in
PackerTask
)
hbacc_HXL
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
high_temp()
(in
PackerTask_
)
hbacc_IMD
(in
HBAccChemType
)
hbe_dIMEaPES_DNA
(in
rosetta.core.scoring.hbonds
)
highest_probability()
(in
ABEGO_SS_Config
)
hbacc_IMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPES_RNAsepother
(in
HBEvalType
)
highres_reference_energy()
(in
DockingEnsemble
)
hbacc_IMD
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HighResDocker
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_IME
(in
HBAccChemType
)
hbe_dIMEaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HighResDockerAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_IME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaPES_RNAsepPM1
(in
HBEvalType
)
HighResDockerCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_IME
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HighResDockerCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_MAX
(in
HBAccChemType
)
hbe_dIMEaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HighResDockerCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaRRI_DNA
(in
HBEvalType
)
HighResDockerCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
hbacc_MAX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
highval()
(in
AtomGeometrySecMatchRPE
)
hbacc_NONE
(in
HBAccChemType
)
hbe_dIMEaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hijack_loop_reading_code_set_loop_line_begin_token()
(in
PoseNumberedLoopFileReader
)
hbacc_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaRRI_RNAsepother
(in
HBEvalType
)
histograms
(in
rosetta.numeric
)
hbacc_NONE
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
histograms()
(in
DOFHistogramRecorder
)
hbacc_PBA
(in
HBAccChemType
)
hbe_dIMEaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
history_queue_struct
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbacc_PBA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMEaRRI_RNAsepPM1
(in
HBEvalType
)
history_queue_struct
(in
rosetta.utility._utility_
)
hbacc_PBA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMEaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
history_queue_structAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbacc_PCA_DNA
(in
HBAccChemType
)
hbe_dIMEaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
history_queue_structAP
(in
rosetta.utility._utility_
)
hbacc_PCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaAROMATIC_HYDROXYL
(in
HBEvalType
)
history_queue_structCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbacc_PCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
history_queue_structCAP
(in
rosetta.utility._utility_
)
hbacc_PCA_RNA
(in
HBAccChemType
)
hbe_dIMIDAZOL_DELTAaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
history_size()
(in
recent_history_queue
)
hbacc_PCA_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaCARBOXAMIDE
(in
HBEvalType
)
Hit
(in
rosetta.protocols.match._protocols_match_
)
hbacc_PCA_RNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hit()
(in
TargetRotamerCoords
)
hbacc_PES_DNA
(in
HBAccChemType
)
hbe_dIMIDAZOL_DELTAaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hit_hash_begin()
(in
HitHasher
)
hbacc_PES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaCARBOXYL
(in
HBEvalType
)
hit_hash_end()
(in
HitHasher
)
hbacc_PES_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hit_list_begin()
(in
Matcher
)
hbacc_PES_RNA
(in
HBAccChemType
)
hbe_dIMIDAZOL_DELTAaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hit_list_end()
(in
Matcher
)
hbacc_PES_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaHYDROXYL
(in
HBEvalType
)
HitAP
(in
rosetta.protocols.match._protocols_match_
)
hbacc_PES_RNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HitCAP
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_DNA
(in
HBAccChemType
)
hbe_dIMIDAZOL_DELTAaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
HitHasher
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_DELTA
(in
HBEvalType
)
HitHasherAP
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HitHasherCAP
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_RNA
(in
HBAccChemType
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
HitNeighborFinder
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_RNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_EPSILON
(in
HBEvalType
)
HitNeighborFinderAP
(in
rosetta.protocols.match._protocols_match_
)
hbacc_RRI_RNA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HitNeighborFinderCAP
(in
rosetta.protocols.match._protocols_match_
)
HBAccChemType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
hits()
(in
Matcher
)
HBAtom
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
hits1()
(in
MotifHits
)
HBAtomAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hits2()
(in
MotifHits
)
HBAtomCAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
hits_potentially_incompatible()
(in
DownstreamBuilder
)
HBCountPairFunction
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
hits_potentially_incompatible()
(in
LigandConformerBuilder
)
HBCountPairFunctionAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hits_potentially_incompatible()
(in
RigidLigandBuilder
)
HBCountPairFunctionCAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hits_to_include_with_partial_match()
(in
ClassicMatchAlgorithm
)
HBCPData
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
hits_to_include_with_partial_match()
(in
DownstreamAlgorithm
)
HBCPDataAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hits_to_include_with_partial_match()
(in
SecondaryMatcherToDownstreamResidue
)
HBCPDataCAP
(in
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hits_to_include_with_partial_match()
(in
SecondaryMatcherToUpstreamResidue
)
hbdef_AHDIST
(in
HBDefType
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hits_to_include_with_partial_match()
(in
WriteUpstreamCoordinateKinemage
)
hbdef_AHDIST
(in
rosetta.protocols.features._protocols_features_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
ho2prime_index()
(in
RNA_ResidueType
)
hbdef_AHDIST
(in
rosetta.protocols.features
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
holes
(in
ScoreType
)
hbdef_ENERGY
(in
HBDefType
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
holes
(in
rosetta.core.scoring._core_scoring_
)
hbdef_ENERGY
(in
rosetta.protocols.features._protocols_features_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes
(in
rosetta.core.scoring
)
hbdef_ENERGY
(in
rosetta.protocols.features
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
holes
(in
rosetta
)
hbdef_MAX
(in
HBDefType
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
holes_decoy
(in
ScoreType
)
hbdef_MAX
(in
rosetta.protocols.features._protocols_features_
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes_decoy
(in
rosetta.core.scoring._core_scoring_
)
hbdef_MAX
(in
rosetta.protocols.features
)
hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
holes_decoy
(in
rosetta.core.scoring
)
hbdef_NONE
(in
HBDefType
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
holes_decoy
(in
rosetta
)
hbdef_NONE
(in
rosetta.protocols.features._protocols_features_
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes_min
(in
ScoreType
)
hbdef_NONE
(in
rosetta.protocols.features
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
holes_min
(in
rosetta.core.scoring._core_scoring_
)
HBDefType
(in
rosetta.protocols.features._protocols_features_
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
holes_min
(in
rosetta.core.scoring
)
hbderiv_ABE_GO
(in
HBDerivType
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes_min
(in
rosetta
)
hbderiv_ABE_GO
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
holes_min_mean
(in
ScoreType
)
hbderiv_ABE_GO
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_DNA
(in
HBEvalType
)
holes_min_mean
(in
rosetta.core.scoring._core_scoring_
)
hbderiv_ABE_GO_GEOMSOL_OCC_ACC
(in
HBDerivType
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes_min_mean
(in
rosetta.core.scoring
)
hbderiv_ABE_GO_GEOMSOL_OCC_ACC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
holes_min_mean
(in
rosetta
)
hbderiv_ABE_GO_GEOMSOL_OCC_ACC
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
HOLES_POSE_INFO
(in
Enum
)
hbderiv_ABE_GO_GEOMSOL_OCC_DON
(in
HBDerivType
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HOLES_POSE_INFO
(in
CacheableDataType
)
hbderiv_ABE_GO_GEOMSOL_OCC_DON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
holes_resl
(in
ScoreType
)
hbderiv_ABE_GO_GEOMSOL_OCC_DON
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
holes_resl
(in
rosetta.core.scoring._core_scoring_
)
hbderiv_MAX
(in
HBDerivType
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
holes_resl
(in
rosetta.core.scoring
)
hbderiv_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
holes_resl
(in
rosetta
)
hbderiv_MAX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_DELTAaWATER
(in
HBEvalType
)
HolesEnergy
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbderiv_NONE
(in
HBDerivType
)
hbe_dIMIDAZOL_DELTAaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesEnergyAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbderiv_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_DELTAaWATER
(in
rosetta.core.scoring.hbonds
)
HolesEnergyCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbderiv_NONE
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaAROMATIC_HYDROXYL
(in
HBEvalType
)
HolesEnergyCreator
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
HBDerivType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesEnergyCreatorAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_AHX
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
HolesEnergyCreatorCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_AHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaCARBOXAMIDE
(in
HBEvalType
)
HolesEnergyRes
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_AHX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesEnergyResAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_AMO
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
HolesEnergyResCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_AMO
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaCARBOXYL
(in
HBEvalType
)
HolesFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_AMO
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_CXA
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
HolesFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_CXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaHYDXROXYL
(in
HBEvalType
)
HolesFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_CXA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaHYDXROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_GDE
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaHYDXROXYL
(in
rosetta.core.scoring.hbonds
)
HolesFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
hbdon_GDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_DELTA
(in
HBEvalType
)
HolesParams
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GDE
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesParamsAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GDH
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
HolesParamsCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GDH
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_EPSILON
(in
HBEvalType
)
HolesParamsRes
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GDH
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesParamsResAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GENERIC_BB
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
HolesParamsResCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GENERIC_BB
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
HolesResult
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GENERIC_BB
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HolesResultAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GENERIC_SC
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
HolesResultCAP
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
hbdon_GENERIC_SC
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
HomogeneousTransform_Double
(in
rosetta.numeric._numeric_
)
hbdon_GENERIC_SC
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HomogeneousTransform_DoubleAP
(in
rosetta.numeric._numeric_
)
hbdon_H2O
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HomogeneousTransform_DoubleCAP
(in
rosetta.numeric._numeric_
)
hbdon_H2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
HomogeneousTransform_T_double_T
(in
rosetta.numeric._numeric_
)
hbdon_H2O
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HomogeneousTransform_T_double_TAP
(in
rosetta.numeric._numeric_
)
hbdon_HXL
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HomogeneousTransform_T_double_TCAP
(in
rosetta.numeric._numeric_
)
hbdon_HXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hoog_edge_paired()
(in
RNA_DMS_LowResolutionPotential
)
hbdon_HXL
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HOOGSTEEN
(in
rosetta.core.chemical.rna
)
hbdon_IMD
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
HOOGSTEEN
(in
BaseEdge
)
hbdon_IMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
HOOGSTEEN
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
hbdon_IMD
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
host_chain()
(in
PlaceSimultaneouslyMover
)
hbdon_IME
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
host_chain()
(in
PlacementAuctionMover
)
hbdon_IME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
host_chain()
(in
PlacementMinimizationMover
)
hbdon_IME
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hotspot_hashing
(in
rosetta.protocols
)
hbdon_IND
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hotspot_length()
(in
HotspotStubSet
)
hbdon_IND
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
HotspotDisjointedFoldTreeMover
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_IND
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotDisjointedFoldTreeMoverAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_MAX
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
HotspotDisjointedFoldTreeMoverCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_MAX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
HotspotDisjointedFoldTreeMoverCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_MAX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotDisjointedFoldTreeMoverCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_NONE
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
HotspotDisjointedFoldTreeMoverCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_NONE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_DNA
(in
HBEvalType
)
HotspotHasherMover
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_NONE
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotHasherMoverAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_PBA
(in
HBDonChemType
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
HotspotHasherMoverCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_PBA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
HotspotHasherMoverCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbdon_PBA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotHasherMoverCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
HBDonChemType
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HotspotHasherMoverCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
hbe_dAHXaAHX
(in
HBEvalType
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
HotspotStub
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotStubAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaAHX
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HotspotStubCAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaCXA
(in
HBEvalType
)
hbe_dIMIDAZOL_EPSILONaWATER
(in
HBEvalType
)
HotspotStubSet
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dIMIDAZOL_EPSILONaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HotspotStubSetAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaCXA
(in
rosetta.core.scoring.hbonds
)
hbe_dIMIDAZOL_EPSILONaWATER
(in
rosetta.core.scoring.hbonds
)
HotspotStubSetCAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
hbe_dAHXaCXL
(in
HBEvalType
)
hbe_dINDaAHX
(in
HBEvalType
)
hpairset()
(in
NatbiasHelicesSheetPotential
)
hbe_dAHXaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hpatch
(in
ScoreType
)
hbe_dAHXaCXL
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaAHX
(in
rosetta.core.scoring.hbonds
)
hpatch
(in
rosetta.core.scoring._core_scoring_
)
hbe_dAHXaH2O
(in
HBEvalType
)
hbe_dINDaCXA
(in
HBEvalType
)
hpatch
(in
rosetta.core.scoring
)
hbe_dAHXaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hpatch
(in
rosetta
)
hbe_dAHXaH2O
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaCXA
(in
rosetta.core.scoring.hbonds
)
hpatch_score()
(in
SurfacePotential
)
hbe_dAHXaHXL
(in
HBEvalType
)
hbe_dINDaCXL
(in
HBEvalType
)
HPatchCalculator
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
hbe_dAHXaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HPatchCalculatorAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
hbe_dAHXaHXL
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaCXL
(in
rosetta.core.scoring.hbonds
)
HPatchCalculatorCAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
hbe_dAHXaIMD
(in
HBEvalType
)
hbe_dINDaH2O
(in
HBEvalType
)
HPatchEnergy
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HPatchEnergyAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaIMD
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaH2O
(in
rosetta.core.scoring.hbonds
)
HPatchEnergyCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaIME
(in
HBEvalType
)
hbe_dINDaHXL
(in
HBEvalType
)
HPatchEnergyCreator
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HPatchEnergyCreatorAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaIME
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaHXL
(in
rosetta.core.scoring.hbonds
)
HPatchEnergyCreatorCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
hbe_dAHXaPBAsepother
(in
HBEvalType
)
hbe_dINDaIMD
(in
HBEvalType
)
HPN_CFr
(in
rosetta.protocols.fldsgn.topology
)
hbe_dAHXaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HPN_CFr
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAHXaPBAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaIMD
(in
rosetta.core.scoring.hbonds
)
HPN_CFr
(in
SheetFoldType
)
hbe_dAHXaPBAsepPM1
(in
HBEvalType
)
hbe_dINDaIME
(in
HBEvalType
)
Hpol_bbOrbH
(in
OrbitalsLookup
)
hbe_dAHXaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hpol_bbOrbH
(in
h_type
)
hbe_dAHXaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaIME
(in
rosetta.core.scoring.hbonds
)
Hpol_bond_geometry
(in
rosetta
)
hbe_dAHXaPCA_DNA
(in
HBEvalType
)
hbe_dINDaPBAsepother
(in
HBEvalType
)
Hpol_bond_geometry
(in
rosetta.core.scoring
)
hbe_dAHXaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hpol_bond_geometry
(in
rosetta.core.scoring._core_scoring_
)
hbe_dAHXaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPBAsepother
(in
rosetta.core.scoring.hbonds
)
Hpol_bond_geometry
(in
ScoreType
)
hbe_dAHXaPCA_RNAsepother
(in
HBEvalType
)
hbe_dINDaPBAsepPM1
(in
HBEvalType
)
Hpol_index()
(in
ResidueType
)
hbe_dAHXaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hpol_index()
(in
Residue
)
hbe_dAHXaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
Hpol_scOrbH
(in
OrbitalsLookup
)
hbe_dAHXaPCA_RNAsepPM1
(in
HBEvalType
)
hbe_dINDaPCA_DNA
(in
HBEvalType
)
Hpol_scOrbH
(in
h_type
)
hbe_dAHXaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HPool_RMSD
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbe_dAHXaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
HPool_RMSDAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbe_dAHXaPES_DNA
(in
HBEvalType
)
hbe_dINDaPCA_RNAsepother
(in
HBEvalType
)
HPool_RMSDCAP
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
hbe_dAHXaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hpos_apolar()
(in
ResidueType
)
hbe_dAHXaPES_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
Hpos_apolar()
(in
Residue
)
hbe_dAHXaPES_RNAsepother
(in
HBEvalType
)
hbe_dINDaPCA_RNAsepPM1
(in
HBEvalType
)
Hpos_polar()
(in
ResidueType
)
hbe_dAHXaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hpos_polar()
(in
Residue
)
hbe_dAHXaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
Hpos_polar_sc()
(in
ResidueType
)
hbe_dAHXaPES_RNAsepPM1
(in
HBEvalType
)
hbe_dINDaPES_DNA
(in
HBEvalType
)
Hpos_polar_sc()
(in
Residue
)
hbe_dAHXaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hr_intersects_hs()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
hbe_dAHXaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPES_DNA
(in
rosetta.core.scoring.hbonds
)
HRF
(in
rosetta.core.scoring.rna.data
)
hbe_dAHXaRRI_DNA
(in
HBEvalType
)
hbe_dINDaPES_RNAsepother
(in
HBEvalType
)
HRF
(in
rosetta.core.scoring.rna.data._core_scoring_rna_data_
)
hbe_dAHXaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HRF
(in
RNA_ReactivityType
)
hbe_dAHXaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hs1_dist()
(in
BetaAlphaBetaMotif
)
hbe_dAHXaRRI_RNAsepother
(in
HBEvalType
)
hbe_dINDaPES_RNAsepPM1
(in
HBEvalType
)
hs1_dist()
(in
HSSTriplet
)
hbe_dAHXaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hs1_orient()
(in
HSSTriplet
)
hbe_dAHXaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hs2_dist()
(in
BetaAlphaBetaMotif
)
hbe_dAHXaRRI_RNAsepPM1
(in
HBEvalType
)
hbe_dINDaRRI_DNA
(in
HBEvalType
)
hs2_dist()
(in
HSSTriplet
)
hbe_dAHXaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hs2_orient()
(in
HSSTriplet
)
hbe_dAHXaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hs_angle()
(in
BetaAlphaBetaMotif
)
hbe_dAMINOaAROMATIC_HYDROXYL
(in
HBEvalType
)
hbe_dINDaRRI_RNAsepother
(in
HBEvalType
)
hs_angle()
(in
HSSTriplet
)
hbe_dAMINOaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hs_pair
(in
ScoreType
)
hbe_dAMINOaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hs_pair
(in
rosetta.core.scoring._core_scoring_
)
hbe_dAMINOaCARBOXAMIDE
(in
HBEvalType
)
hbe_dINDaRRI_RNAsepPM1
(in
HBEvalType
)
hs_pair
(in
rosetta.core.scoring
)
hbe_dAMINOaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hs_pair
(in
rosetta
)
hbe_dAMINOaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hbe_dINDaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hsheet_dist()
(in
BetaAlphaBetaMotif
)
hbe_dAMINOaCARBOXYL
(in
HBEvalType
)
hbe_dINDOLaAROMATIC_HYDROXYL
(in
HBEvalType
)
hsheet_dist()
(in
HSSTriplet
)
hbe_dAMINOaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hsheet_elev_angle()
(in
BetaAlphaBetaMotif
)
hbe_dAMINOaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
HSPairPotential
(in
rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
)
hbe_dAMINOaHYDROXYL
(in
HBEvalType
)
hbe_dINDOLaCARBOXAMIDE
(in
HBEvalType
)
HSPairPotentialAP
(in
rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
)
hbe_dAMINOaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HSPairPotentialCAP
(in
rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
)
hbe_dAMINOaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hss_triplet()
(in
HSSTripletSet
)
hbe_dAMINOaIMIDAZOL_DELTA
(in
HBEvalType
)
hbe_dINDOLaCARBOXYL
(in
HBEvalType
)
hss_triplet_set()
(in
NatbiasHelicesSheetPotential
)
hbe_dAMINOaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hss_triplets()
(in
HSSTripletSet
)
hbe_dAMINOaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hss_triplets()
(in
BluePrint
)
hbe_dAMINOaIMIDAZOL_EPSILON
(in
HBEvalType
)
hbe_dINDOLaHYDROXYL
(in
HBEvalType
)
HSSTriplet
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HSSTripletAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
HSSTripletCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
hbe_dINDOLaIMIDAZOL_DELTA
(in
HBEvalType
)
HSSTripletFilter
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HSSTripletFilterAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
HSSTripletFilterCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
hbe_dINDOLaIMIDAZOL_EPSILON
(in
HBEvalType
)
HSSTripletFilterCreator
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HSSTripletFilterCreatorAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
HSSTripletFilterCreatorCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
HSSTripletSet
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HSSTripletSetAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_CARBONYL_DNA
(in
rosetta.core.scoring.hbonds
)
HSSTripletSetCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
hbe_dAMINOaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepother
(in
HBEvalType
)
hsv_to_rgb()
(in
rosetta.numeric._numeric_
)
hbe_dAMINOaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HT_ang_U1D2
(in
rosetta.protocols.toolbox.match_enzdes_util
)
hbe_dAMINOaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HT_ang_U1D2
(in
ExternalTransform
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
HBEvalType
)
HT_ang_U1D2
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HT_ang_U2D1
(in
rosetta.protocols.toolbox.match_enzdes_util
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HT_ang_U2D1
(in
ExternalTransform
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_ESTER_DNA
(in
HBEvalType
)
HT_ang_U2D1
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
ht_for_chitip_atom()
(in
UpstreamResTypeGeometry
)
hbe_dAMINOaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_ESTER_DNA
(in
rosetta.core.scoring.hbonds
)
ht_for_chitip_atoms()
(in
UpstreamResTypeGeometry
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepother
(in
HBEvalType
)
HT_tor_U1D3
(in
rosetta.protocols.toolbox.match_enzdes_util
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HT_tor_U1D3
(in
ExternalTransform
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepother
(in
rosetta.core.scoring.hbonds
)
HT_tor_U1D3
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepPM1
(in
HBEvalType
)
HT_tor_U2D2
(in
rosetta.protocols.toolbox.match_enzdes_util
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HT_tor_U2D2
(in
ExternalTransform
)
hbe_dAMINOaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPHOSPHATE_ESTER_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
HT_tor_U2D2
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
hbe_dAMINOaRIBOSE_RING_DNA
(in
HBEvalType
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepother
(in
HBEvalType
)
HT_tor_U3D1
(in
rosetta.protocols.toolbox.match_enzdes_util
)
hbe_dAMINOaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HT_tor_U3D1
(in
ExternalTransform
)
hbe_dAMINOaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepother
(in
rosetta.core.scoring.hbonds
)
HT_tor_U3D1
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
hbe_dAMINOaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepPM1
(in
HBEvalType
)
hurry()
(in
LoopRemodel
)
hbe_dAMINOaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hurry()
(in
SymDockProtocol
)
hbe_dAMINOaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaPROTEIN_BB_AMIDEsepPM1
(in
rosetta.core.scoring.hbonds
)
HYBRID_MAX
(in
rosetta
)
hbe_dAMINOaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
hbe_dINDOLaRIBOSE_RING_DNA
(in
HBEvalType
)
HYBRID_MAX
(in
rosetta.core.chemical
)
hbe_dAMINOaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HYBRID_MAX
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAMINOaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaRIBOSE_RING_DNA
(in
rosetta.core.scoring.hbonds
)
HYBRID_MAX
(in
Hybridization
)
hbe_dAMINOaWATER
(in
HBEvalType
)
hbe_dINDOLaRIBOSE_RING_RNAsepother
(in
HBEvalType
)
hybrid_vdw
(in
ScoreType
)
hbe_dAMINOaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hybrid_vdw
(in
rosetta.core.scoring._core_scoring_
)
hbe_dAMINOaWATER
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaRIBOSE_RING_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hybrid_vdw
(in
rosetta.core.scoring
)
hbe_dAMOaAHX
(in
HBEvalType
)
hbe_dINDOLaRIBOSE_RING_RNAsepPM1
(in
HBEvalType
)
hybrid_vdw
(in
rosetta
)
hbe_dAMOaAHX
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
Hybridization
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAMOaAHX
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaRIBOSE_RING_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hybridization
(in
rosetta.protocols
)
hbe_dAMOaCXA
(in
HBEvalType
)
hbe_dINDOLaWATER
(in
HBEvalType
)
hybridization()
(in
AtomType
)
hbe_dAMOaCXA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dINDOLaWATER
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hybridization()
(in
OrbitalType
)
hbe_dAMOaCXA
(in
rosetta.core.scoring.hbonds
)
hbe_dINDOLaWATER
(in
rosetta.core.scoring.hbonds
)
hybridization_rank()
(in
PossibleAtomTypesForAtom
)
hbe_dAMOaCXL
(in
HBEvalType
)
hbe_dPBAaAHXsepother
(in
HBEvalType
)
hybridization_type_from_name()
(in
HBondTypeManager
)
hbe_dAMOaCXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaAHXsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hybridize()
(in
SegmentHybridizer
)
hbe_dAMOaCXL
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaAHXsepother
(in
rosetta.core.scoring.hbonds
)
HybridizeFoldtreeDynamic
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaH2O
(in
HBEvalType
)
hbe_dPBAaAHXsepPM1
(in
HBEvalType
)
HybridizeFoldtreeDynamicAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaAHXsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HybridizeFoldtreeDynamicCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaH2O
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaAHXsepPM1
(in
rosetta.core.scoring.hbonds
)
HybridizeProtocol
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaHXL
(in
HBEvalType
)
hbe_dPBAaCXAsepother
(in
HBEvalType
)
HybridizeProtocolAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaHXL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaCXAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HybridizeProtocolCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaHXL
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaCXAsepother
(in
rosetta.core.scoring.hbonds
)
HybridizeProtocolCreator
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaIMD
(in
HBEvalType
)
hbe_dPBAaCXAsepPM1
(in
HBEvalType
)
HybridizeProtocolCreatorAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaIMD
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaCXAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HybridizeProtocolCreatorCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
hbe_dAMOaIMD
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaCXAsepPM1
(in
rosetta.core.scoring.hbonds
)
HybridOrbitalType
(in
GasteigerAtomTypeData
)
hbe_dAMOaIME
(in
HBEvalType
)
hbe_dPBAaCXLsepother
(in
HBEvalType
)
HybridVDW_Energy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaIME
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaCXLsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HybridVDW_EnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaIME
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaCXLsepother
(in
rosetta.core.scoring.hbonds
)
HybridVDW_EnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaPBAsepother
(in
HBEvalType
)
hbe_dPBAaCXLsepPM1
(in
HBEvalType
)
HybridVDW_EnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaCXLsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HybridVDW_EnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaPBAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaCXLsepPM1
(in
rosetta.core.scoring.hbonds
)
HybridVDW_EnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
hbe_dAMOaPBAsepPM1
(in
HBEvalType
)
hbe_dPBAaH2O
(in
HBEvalType
)
hydrogen_interaction_cutoff()
(in
FA_ElecEnergy
)
hbe_dAMOaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaH2O
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogen_interaction_cutoff()
(in
MMLJEnergyInter
)
hbe_dAMOaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaH2O
(in
rosetta.core.scoring.hbonds
)
hydrogen_interaction_cutoff2()
(in
FA_ElecEnergy
)
hbe_dAMOaPCA_DNA
(in
HBEvalType
)
hbe_dPBAaHXLsepother
(in
HBEvalType
)
hydrogen_interaction_cutoff2()
(in
AnalyticEtableEnergy
)
hbe_dAMOaPCA_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaHXLsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogen_interaction_cutoff2()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
hbe_dAMOaPCA_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaHXLsepother
(in
rosetta.core.scoring.hbonds
)
hydrogen_interaction_cutoff2()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
hbe_dAMOaPCA_RNAsepother
(in
HBEvalType
)
hbe_dPBAaHXLsepPM1
(in
HBEvalType
)
hydrogen_interaction_cutoff2()
(in
Etable
)
hbe_dAMOaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaHXLsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogen_interaction_cutoff2()
(in
EtableEvaluator
)
hbe_dAMOaPCA_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaHXLsepPM1
(in
rosetta.core.scoring.hbonds
)
hydrogen_interaction_cutoff2()
(in
TableLookupEtableEnergy
)
hbe_dAMOaPCA_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaIMDsepother
(in
HBEvalType
)
hydrogen_interaction_cutoff2()
(in
HBondEnergy
)
hbe_dAMOaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaIMDsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogen_interaction_cutoff2()
(in
MMLJEnergyInter
)
hbe_dAMOaPCA_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaIMDsepother
(in
rosetta.core.scoring.hbonds
)
hydrogenatom_heavyatom_energy()
(in
FA_ElecEnergy
)
hbe_dAMOaPES_DNA
(in
HBEvalType
)
hbe_dPBAaIMDsepPM1
(in
HBEvalType
)
hydrogenatom_heavyatom_energy()
(in
AnalyticEtableEvaluator
)
hbe_dAMOaPES_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaIMDsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogenatom_heavyatom_energy()
(in
TableLookupEvaluator
)
hbe_dAMOaPES_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaIMDsepPM1
(in
rosetta.core.scoring.hbonds
)
hydrogenatom_heavyatom_energy()
(in
HBondEnergy
)
hbe_dAMOaPES_RNAsepother
(in
HBEvalType
)
hbe_dPBAaIMEsepother
(in
HBEvalType
)
hydrogenatom_heavyatom_energy()
(in
MMLJEnergyInter
)
hbe_dAMOaPES_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaIMEsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogenatom_hydrogenatom_energy()
(in
FA_ElecEnergy
)
hbe_dAMOaPES_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaIMEsepother
(in
rosetta.core.scoring.hbonds
)
hydrogenatom_hydrogenatom_energy()
(in
AnalyticEtableEvaluator
)
hbe_dAMOaPES_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaIMEsepPM1
(in
HBEvalType
)
hydrogenatom_hydrogenatom_energy()
(in
TableLookupEvaluator
)
hbe_dAMOaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaIMEsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hydrogenatom_hydrogenatom_energy()
(in
HBondEnergy
)
hbe_dAMOaPES_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaIMEsepPM1
(in
rosetta.core.scoring.hbonds
)
hydrogenatom_hydrogenatom_energy()
(in
MMLJEnergyInter
)
hbe_dAMOaRRI_DNA
(in
HBEvalType
)
hbe_dPBAaPBAsepM2turn
(in
HBEvalType
)
HydrogenAtomFilter
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAMOaRRI_DNA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepM2turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HydrogenAtomFilterAP
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAMOaRRI_DNA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepM2turn
(in
rosetta.core.scoring.hbonds
)
HydrogenAtomFilterCAP
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAMOaRRI_RNAsepother
(in
HBEvalType
)
hbe_dPBAaPBAsepM3turn
(in
HBEvalType
)
hydrogens()
(in
ResidueType
)
hbe_dAMOaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepM3turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HydrophobicityProfileSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAMOaRRI_RNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepM3turn
(in
rosetta.core.scoring.hbonds
)
HydrophobicityProfileSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAMOaRRI_RNAsepPM1
(in
HBEvalType
)
hbe_dPBAaPBAsepM4helix
(in
HBEvalType
)
HydrophobicityProfileSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAMOaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepM4helix
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HydrophobicitySimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAMOaRRI_RNAsepPM1
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepM4helix
(in
rosetta.core.scoring.hbonds
)
HydrophobicitySimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAROMATIC_HYDROXYLaAROMATIC_HYDROXYL
(in
HBEvalType
)
hbe_dPBAaPBAsepother
(in
HBEvalType
)
HydrophobicitySimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
hbe_dAROMATIC_HYDROXYLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HYDROXYLATION
(in
rosetta
)
hbe_dAROMATIC_HYDROXYLaAROMATIC_HYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepother
(in
rosetta.core.scoring.hbonds
)
HYDROXYLATION
(in
rosetta.core.chemical
)
hbe_dAROMATIC_HYDROXYLaCARBOXAMIDE
(in
HBEvalType
)
hbe_dPBAaPBAsepP2turn
(in
HBEvalType
)
HYDROXYLATION
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAROMATIC_HYDROXYLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepP2turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HYDROXYLATION
(in
VariantType
)
hbe_dAROMATIC_HYDROXYLaCARBOXAMIDE
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepP2turn
(in
rosetta.core.scoring.hbonds
)
HYDROXYLATION1
(in
rosetta
)
hbe_dAROMATIC_HYDROXYLaCARBOXYL
(in
HBEvalType
)
hbe_dPBAaPBAsepP3turn
(in
HBEvalType
)
HYDROXYLATION1
(in
rosetta.core.chemical
)
hbe_dAROMATIC_HYDROXYLaCARBOXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepP3turn
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HYDROXYLATION1
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAROMATIC_HYDROXYLaCARBOXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepP3turn
(in
rosetta.core.scoring.hbonds
)
HYDROXYLATION1
(in
VariantType
)
hbe_dAROMATIC_HYDROXYLaHYDROXYL
(in
HBEvalType
)
hbe_dPBAaPBAsepP4helix
(in
HBEvalType
)
HYDROXYLATION2
(in
rosetta
)
hbe_dAROMATIC_HYDROXYLaHYDROXYL
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepP4helix
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HYDROXYLATION2
(in
rosetta.core.chemical
)
hbe_dAROMATIC_HYDROXYLaHYDROXYL
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepP4helix
(in
rosetta.core.scoring.hbonds
)
HYDROXYLATION2
(in
rosetta.core.chemical._core_chemical_
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_DELTA
(in
HBEvalType
)
hbe_dPBAaPBAsepPM1
(in
HBEvalType
)
HYDROXYLATION2
(in
VariantType
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPBAsepPM1
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hyper_tan()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_DELTA
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPBAsepPM1
(in
rosetta.core.scoring.hbonds
)
HyperRectangle
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_EPSILON
(in
HBEvalType
)
hbe_dPBAaPCA_DNAsepother
(in
HBEvalType
)
HyperRectangleAP
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
hbe_dPBAaPCA_DNAsepother
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
HyperRectangleCAP
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
hbe_dAROMATIC_HYDROXYLaIMIDAZOL_EPSILON
(in
rosetta.core.scoring.hbonds
)
hbe_dPBAaPCA_DNAsepother
(in
rosetta.core.scoring.hbonds
)
hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_DNA
(in
HBEvalType
)
hbe_dPBAaPCA_DNAsepPM1
(in
HBEvalType
)
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