Package rosetta :: Package protocols :: Package hotspot_hashing :: Module _protocols_hotspot_hashing_
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Module _protocols_hotspot_hashing_

Classes [hide private]
  AddSearchPatternRotSetOp
protocols/hotspot_hashing/SearchPatternRotSetOp.hh:70
  AddSearchPatternRotSetOpAP
  AddSearchPatternRotSetOpCAP
  CartesianSearchPattern
protocols/hotspot_hashing/SearchPattern.hh:415
  CartesianSearchPatternAP
  CartesianSearchPatternCAP
  ComposeSearchPatterns
protocols/hotspot_hashing/SearchPattern.hh:531
  ComposeSearchPatternsAP
  ComposeSearchPatternsCAP
  ConstPattern
protocols/hotspot_hashing/SearchPattern.hh:136
  ConstPatternAP
  ConstPatternCAP
  HotspotStub
protocols/hotspot_hashing/HotspotStub.hh:39
  HotspotStubAP
  HotspotStubCAP
  HotspotStubSet
protocols/hotspot_hashing/HotspotStubSet.hh:53
  HotspotStubSetAP
  HotspotStubSetCAP
  LSMSearchPattern
protocols/hotspot_hashing/SearchPattern.hh:194
  LSMSearchPatternAP
  LSMSearchPatternCAP
  PartitionedSearchPattern
protocols/hotspot_hashing/SearchPattern.hh:496
  PartitionedSearchPatternAP
  PartitionedSearchPatternCAP
  RotationSearchPattern
protocols/hotspot_hashing/SearchPattern.hh:289
  RotationSearchPatternAP
  RotationSearchPatternCAP
  SICPatternAtTransform
protocols/hotspot_hashing/SICSearchPattern.hh:40
  SICPatternAtTransformAP
  SICPatternAtTransformCAP
  SearchPattern
protocols/hotspot_hashing/SearchPattern.hh:130
  SearchPatternAP
  SearchPatternCAP
  SearchPatternExpansion
protocols/hotspot_hashing/SearchPattern.hh:597
  SearchPatternExpansionAP
  SearchPatternExpansionCAP
  SearchPatternRotSetOp
protocols/hotspot_hashing/SearchPatternRotSetOp.hh:40
  SearchPatternRotSetOpAP
  SearchPatternRotSetOpCAP
  SearchPatternTransform
protocols/hotspot_hashing/SearchPattern.hh:569
  SearchPatternTransformAP
  SearchPatternTransformCAP
  SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.
  SingletonBase_T_core_chemical_ChemicalManager_TAP
  SingletonBase_T_core_chemical_ChemicalManager_TCAP
  SphericalRotationSearchPattern
protocols/hotspot_hashing/SearchPattern.hh:343
  SphericalRotationSearchPatternAP
  SphericalRotationSearchPatternCAP
  StubGenerator
protocols/hotspot_hashing/StubGenerator.hh:35
  StubGeneratorAP
  StubGeneratorCAP
  StubStatus
protocols/hotspot_hashing/HotspotStub.hh:33
  SurfaceSearchPattern
protocols/hotspot_hashing/SurfaceSearchPattern.hh:38
  SurfaceSearchPatternAP
  SurfaceSearchPatternCAP
  TestPattern
protocols/hotspot_hashing/SearchPattern.hh:157
  TestPatternAP
  TestPatternCAP
  VectorPair
protocols/hotspot_hashing/SearchPattern.hh:44
  VectorPairAP
  VectorPairCAP
  __CPP_AddSearchPatternRotSetOp__
  __CPP_CartesianSearchPattern__
  __CPP_ComposeSearchPatterns__
  __CPP_ConstPattern__
  __CPP_LSMSearchPattern__
  __CPP_PartitionedSearchPattern__
  __CPP_RotationSearchPattern__
  __CPP_SICPatternAtTransform__
  __CPP_SearchPatternExpansion__
  __CPP_SearchPatternRotSetOp__
  __CPP_SearchPatternTransform__
  __CPP_SearchPattern__
  __CPP_SphericalRotationSearchPattern__
  __CPP_SurfaceSearchPattern__
  __CPP_TestPattern__
Functions [hide private]
 
remove_hotspot_constraints_from_pose(...)
remove_hotspot_constraints_from_pose( (Pose)) -> object : utility function for deleting all backbone stub constraints from a pose.
 
residue_sc_rmsd_no_super(...)
residue_sc_rmsd_no_super( (Residue)res1, (Residue)res2 [, (bool)fxnal_group_only=False]) -> float : utility function to calculate per-residue sidechain rmsd without superposition
 
stub_from_points(...)
stub_from_points( (std_istream)stream, (Stub)stub) -> std_istream : protocols/hotspot_hashing/SearchPattern.hh:100
 
stub_tgt_angle(...)
stub_tgt_angle( (Pose)pose, (Residue)stub, (int)target_res) -> float : utility function to make sure stub's Cbeta is not pointed away from the target.
 
stub_to_points(...)
stub_to_points( (OStream)stream, (Stub)stub) -> OStream : protocols/hotspot_hashing/SearchPattern.hh:90
Variables [hide private]
  __package__ = None
  accept = rosetta.protocols.hotspot_hashing._protocols_hotspot_...
  reject = rosetta.protocols.hotspot_hashing._protocols_hotspot_...
  unchecked = rosetta.protocols.hotspot_hashing._protocols_hotsp...
Function Details [hide private]

remove_hotspot_constraints_from_pose(...)

 

remove_hotspot_constraints_from_pose( (Pose)) -> object :
    utility function for deleting all backbone stub constraints from a pose.
    Returns the removed constraints (ambiguous).
    

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint const>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint const> > > remove_hotspot_constraints_from_pose(core::pose::Pose {lvalue})

residue_sc_rmsd_no_super(...)

 

residue_sc_rmsd_no_super( (Residue)res1, (Residue)res2 [, (bool)fxnal_group_only=False]) -> float :
    utility function to calculate per-residue sidechain rmsd without superposition
    

    C++ signature :
        double residue_sc_rmsd_no_super(boost::shared_ptr<core::conformation::Residue const>,boost::shared_ptr<core::conformation::Residue const> [,bool=False])

stub_from_points(...)

 

stub_from_points( (std_istream)stream, (Stub)stub) -> std_istream :
    protocols/hotspot_hashing/SearchPattern.hh:100

    C++ signature :
        std::istream {lvalue} stub_from_points(std::istream {lvalue},core::kinematics::Stub {lvalue})

stub_tgt_angle(...)

 

stub_tgt_angle( (Pose)pose, (Residue)stub, (int)target_res) -> float :
    utility function to make sure stub's Cbeta is not pointed away from the target.
    

    C++ signature :
        double stub_tgt_angle(core::pose::Pose,boost::shared_ptr<core::conformation::Residue const>,unsigned long)

stub_to_points(...)

 

stub_to_points( (OStream)stream, (Stub)stub) -> OStream :
    protocols/hotspot_hashing/SearchPattern.hh:90

    C++ signature :
        std::ostream {lvalue} stub_to_points(std::ostream {lvalue},core::kinematics::Stub)


Variables Details [hide private]

accept

Value:
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_.StubStat\
us.accept

reject

Value:
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_.StubStat\
us.reject

unchecked

Value:
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_.StubStat\
us.unchecked