Class FoldTreeSketch

__init__( (object)arg1) -> None :

    C++ signature :
        void __init__(_object*)

__init__( (object)arg1, (int)length) -> None :
    core/environment/FoldTreeSketch.hh:69

    C++ signature :
        void __init__(_object*,unsigned long)

__init__( (object)arg1, (FoldTree)) -> None :
    core/environment/FoldTreeSketch.hh:71

    C++ signature :
        void __init__(_object*,core::kinematics::FoldTree)

__init__( (object)arg1, (FoldTreeSketch)) -> None :
    copy the FoldTreeSketch
    @warning This is not a full deep copy. It doesn't copy the Node pointers deeply, which means
    

    C++ signature :
        void __init__(_object*,core::environment::FoldTreeSketch)

Overrides: object.__init__

helper for pickle

Overrides: object.__reduce__

(inherited documentation)

append_peptide( (FoldTreeSketch)arg1, (int)l) -> None :
    add a new (graph-detached) peptide-bonded strech of length l at the end of the sequence
    

    C++ signature :
        void append_peptide(core::environment::FoldTreeSketch {lvalue},unsigned long)

append_residue( (FoldTreeSketch)arg1) -> None :
    core/environment/FoldTreeSketch.hh:88

    C++ signature :
        void append_residue(core::environment::FoldTreeSketch {lvalue})

cycle( (FoldTreeSketch)arg1 [, (int)start=1]) -> vector1_Size :
    core/environment/FoldTreeSketch.hh:94

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > cycle(core::environment::FoldTreeSketch {lvalue} [,unsigned long=1])

has_cut( (FoldTreeSketch)arg1, (int)) -> bool :
    core/environment/FoldTreeSketch.hh:90

    C++ signature :
        bool has_cut(core::environment::FoldTreeSketch {lvalue},unsigned long)

has_jump( (FoldTreeSketch)arg1, (int)p1, (int)p2) -> bool :
    core/environment/FoldTreeSketch.hh:92

    C++ signature :
        bool has_jump(core::environment::FoldTreeSketch {lvalue},unsigned long,unsigned long)

insert_cut( (FoldTreeSketch)arg1, (int)l) -> None :
    insert a cut after position l (i.e. between position l and l+1)
    

    C++ signature :
        void insert_cut(core::environment::FoldTreeSketch {lvalue},unsigned long)

insert_cut( (FoldTreeSketch)arg1, (vector1_Real)bias) -> int :
    randomly insert a cut using the bias passed in.
    

    C++ signature :
        unsigned long insert_cut(core::environment::FoldTreeSketch {lvalue},utility::vector1<double, std::allocator<double> >)

insert_jump( (FoldTreeSketch)arg1, (int)p1, (int)p2) -> None :
    insert a jump between positions p1 and p2 in the graph
    

    C++ signature :
        void insert_jump(core::environment::FoldTreeSketch {lvalue},unsigned long,unsigned long)

nres( (FoldTreeSketch)arg1) -> int :
    core/environment/FoldTreeSketch.hh:106

    C++ signature :
        unsigned long nres(core::environment::FoldTreeSketch {lvalue})

num_cuts( (FoldTreeSketch)arg1) -> int :
    core/environment/FoldTreeSketch.hh:110

    C++ signature :
        unsigned long num_cuts(core::environment::FoldTreeSketch {lvalue})

num_jumps( (FoldTreeSketch)arg1) -> int :
    core/environment/FoldTreeSketch.hh:108

    C++ signature :
        unsigned long num_jumps(core::environment::FoldTreeSketch {lvalue})

remove_cycles( (FoldTreeSketch)arg1) -> set_Size :
    core/environment/FoldTreeSketch.hh:96

    C++ signature :
        std::set<unsigned long, std::less<unsigned long>, std::allocator<unsigned long> > remove_cycles(core::environment::FoldTreeSketch {lvalue})

remove_cycles( (FoldTreeSketch)arg1, (vector1_Real)bias) -> set_Size :
    core/environment/FoldTreeSketch.hh:98

    C++ signature :
        std::set<unsigned long, std::less<unsigned long>, std::allocator<unsigned long> > remove_cycles(core::environment::FoldTreeSketch {lvalue},utility::vector1<double, std::allocator<double> >)

render( (FoldTreeSketch)arg1) -> FoldTree :
    wrapper for the other render()
    

    C++ signature :
        boost::shared_ptr<core::kinematics::FoldTree> render(core::environment::FoldTreeSketch {lvalue})

render( (FoldTreeSketch)arg1, (FoldTree)ft) -> None :
    build this graph into the FoldTree ft. The state of the graph must be valid here.
    

    C++ signature :
        void render(core::environment::FoldTreeSketch {lvalue},core::kinematics::FoldTree {lvalue})