Package rosetta :: Package basic :: Module _basic_ :: Class ProfTag

Class ProfTag

object --+        
         |        
       int --+    
             |    
       ??.enum --+
                 |
                ProfTag

not intended for profiling inside tight loops
the clock() routine currently being used has fairly crappy
resolution and it will introduce some small overhead with the
function calls and the if-check even if not using -profile on
the command line
you can wrap it around large-ish chunks of code, like fullatom_energy
or rotamer_trials...
A simple setup for timing code fragments. Probably not optimal timing
functions -- I'm open to suggestions.
looks like (see eg fullatom_energy or scorefxn)
PROF_START( prof::TAG );
<function call>
PROF_STOP( prof::TAG );
where TAG is in the enum "Prof_tag" below (feel free to add new ones)
also add to tag2string if you want friendly output.
PROF_STOP checks the time and increments the total time assigned to TAG
2. later on, in your simulation code you can do:
prof_reset();
-- miscellaneous simulation --
prof_show();
The final call to prof::show() will display the time usage measured
by all the PROF_* calls between reset() and show()

Instance Methods

[hide private]

Inherited from unreachable.enum: __repr__, __str__

Inherited from int: __abs__, __add__, __and__, __cmp__, __coerce__, __div__, __divmod__, __float__, __floordiv__, __format__, __getattribute__, __getnewargs__, __hash__, __hex__, __index__, __int__, __invert__, __long__, __lshift__, __mod__, __mul__, __neg__, __new__, __nonzero__, __oct__, __or__, __pos__, __pow__, __radd__, __rand__, __rdiv__, __rdivmod__, __rfloordiv__, __rlshift__, __rmod__, __rmul__, __ror__, __rpow__, __rrshift__, __rshift__, __rsub__, __rtruediv__, __rxor__, __sub__, __truediv__, __trunc__, __xor__, bit_length, conjugate

Inherited from object: __delattr__, __init__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Variables

[hide private]

ABINITIO = rosetta.basic._basic_.ProfTag.ABINITIO

APPLY_BB_MOVE = rosetta.basic._basic_.ProfTag.APPLY_BB_MOVE

APPLY_MOVE = rosetta.basic._basic_.ProfTag.APPLY_MOVE

APPLY_SC_MOVE = rosetta.basic._basic_.ProfTag.APPLY_SC_MOVE

ARCHIVE_BLOCK_FILE = rosetta.basic._basic_.ProfTag.ARCHIVE_BLO...

ARCHIVE_CRITICAL_JOBSCOMPLETE = rosetta.basic._basic_.ProfTag....

ARCHIVE_EVALUATORS = rosetta.basic._basic_.ProfTag.ARCHIVE_EVA...

ARCHIVE_EVAL_DECOYS = rosetta.basic._basic_.ProfTag.ARCHIVE_EV...

ARCHIVE_FILL_POSE = rosetta.basic._basic_.ProfTag.ARCHIVE_FILL...

ARCHIVE_GEN_BATCH = rosetta.basic._basic_.ProfTag.ARCHIVE_GEN_...

ARCHIVE_JOBSCOMPLETE = rosetta.basic._basic_.ProfTag.ARCHIVE_J...

ARCHIVE_READ_DECOYS = rosetta.basic._basic_.ProfTag.ARCHIVE_RE...

ARCHIVE_SCORE_POSE = rosetta.basic._basic_.ProfTag.ARCHIVE_SCO...

ARCHIVE_SYNC_BATCHES = rosetta.basic._basic_.ProfTag.ARCHIVE_S...

ATOM_TREE_UPDATE_INTERNAL_COORDS = rosetta.basic._basic_.ProfT...

ATOM_TREE_UPDATE_XYZ_COORDS = rosetta.basic._basic_.ProfTag.AT...

BACKRUB_MOVER = rosetta.basic._basic_.ProfTag.BACKRUB_MOVER

CANONICALMOVER_WRITE_TO_FILE = rosetta.basic._basic_.ProfTag.C...

CA_DME_EVALUATION = rosetta.basic._basic_.ProfTag.CA_DME_EVALU...

CA_RMSD_EVALUATION = rosetta.basic._basic_.ProfTag.CA_RMSD_EVA...

CCD_CLOSE = rosetta.basic._basic_.ProfTag.CCD_CLOSE

CHECK_COMM_SIZE = rosetta.basic._basic_.ProfTag.CHECK_COMM_SIZE

CHEMICAL_MAKE_POSE = rosetta.basic._basic_.ProfTag.CHEMICAL_MA...

COMM_REDUCE_SIZE = rosetta.basic._basic_.ProfTag.COMM_REDUCE_SIZE

CONFORMATION_COPY = rosetta.basic._basic_.ProfTag.CONFORMATION...

CONFORMATION_DETECT_DISULF = rosetta.basic._basic_.ProfTag.CON...

CONFORMATION_FIX_DISULF = rosetta.basic._basic_.ProfTag.CONFOR...

CONSTRAINT_SCORE = rosetta.basic._basic_.ProfTag.CONSTRAINT_SCORE

CONSTRAINT_SET_COPY = rosetta.basic._basic_.ProfTag.CONSTRAINT...

CONSTRUCT_DISTANCE_MATRIX = rosetta.basic._basic_.ProfTag.CONS...

COPY_COORDS = rosetta.basic._basic_.ProfTag.COPY_COORDS

DALPHABALL = rosetta.basic._basic_.ProfTag.DALPHABALL

DALPHABALL_DERIV = rosetta.basic._basic_.ProfTag.DALPHABALL_DERIV

DATA_STORAGE = rosetta.basic._basic_.ProfTag.DATA_STORAGE

DFUNC = rosetta.basic._basic_.ProfTag.DFUNC

ENERGIES_COPY = rosetta.basic._basic_.ProfTag.ENERGIES_COPY

ENERGY_ENVPAIR_POTENTIAL = rosetta.basic._basic_.ProfTag.ENERG...

ENERGY_GRAPH_COPY = rosetta.basic._basic_.ProfTag.ENERGY_GRAPH...

FACTS_GET_ALL_BORN_RADII = rosetta.basic._basic_.ProfTag.FACTS...

FACTS_ROTAMER_BACKGROUND_ENERGIES = rosetta.basic._basic_.Prof...

FACTS_ROTAMER_PAIR_ENERGIES = rosetta.basic._basic_.ProfTag.FA...

FACTS_SETUP_FOR_PACKING = rosetta.basic._basic_.ProfTag.FACTS_...

FARRAY_MANIPULATION = rosetta.basic._basic_.ProfTag.FARRAY_MAN...

FINALIZE = rosetta.basic._basic_.ProfTag.FINALIZE

FIND_SUGAR_AND_SUITE_FRAGS_I = rosetta.basic._basic_.ProfTag.F...

FIND_SUGAR_AND_SUITE_FRAGS_II = rosetta.basic._basic_.ProfTag....

FRAGMENTPICKING = rosetta.basic._basic_.ProfTag.FRAGMENTPICKING

FRAGMENTPICKING_ATOMPAIR_SCORE = rosetta.basic._basic_.ProfTag...

FRAGMENTPICKING_CANDIDATES_COLLECTING = rosetta.basic._basic_....

FRAGMENTPICKING_CS_SCORE = rosetta.basic._basic_.ProfTag.FRAGM...

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE = rosetta.basic._basic_.P...

FRAGMENTPICKING_PHIPSI_SCORE = rosetta.basic._basic_.ProfTag.F...

FRAGMENTPICKING_PROFILE_CAHING = rosetta.basic._basic_.ProfTag...

FRAGMENTPICKING_PROFILE_SCORE = rosetta.basic._basic_.ProfTag....

FRAGMENTPICKING_READ_VALL = rosetta.basic._basic_.ProfTag.FRAG...

FRAGMENTPICKING_SECONDARY_SCORE = rosetta.basic._basic_.ProfTa...

FRAGMENT_MOVER = rosetta.basic._basic_.ProfTag.FRAGMENT_MOVER

FUNC = rosetta.basic._basic_.ProfTag.FUNC

GB_GET_ALL_BORN_RADII = rosetta.basic._basic_.ProfTag.GB_GET_A...

GB_SETUP_FOR_PACKING = rosetta.basic._basic_.ProfTag.GB_SETUP_...

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES = rosetta.basic._basic_.P...

GEN_BORN_ROTAMER_PAIR_ENERGIES = rosetta.basic._basic_.ProfTag...

GET_ENERGIES = rosetta.basic._basic_.ProfTag.GET_ENERGIES

HIERARCHICAL_ADD = rosetta.basic._basic_.ProfTag.HIERARCHICAL_ADD

HIERARCHICAL_ADD_ELEM_TO_CACHE = rosetta.basic._basic_.ProfTag...

HIERARCHICAL_EVALUATE = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHICAL_FIND = rosetta.basic._basic_.ProfTag.HIERARCHICAL...

HIERARCHICAL_FIND_ADDRESS = rosetta.basic._basic_.ProfTag.HIER...

HIERARCHICAL_POOL_SIZE = rosetta.basic._basic_.ProfTag.HIERARC...

HIERARCHICAL_ROUND = rosetta.basic._basic_.ProfTag.HIERARCHICA...

HIERARCHICAL_SORT_ADDRESSES = rosetta.basic._basic_.ProfTag.HI...

HIERARCHY_FIND_ADDRESS = rosetta.basic._basic_.ProfTag.HIERARC...

HIERARCHY_GET_NEXT_CANDIDATE = rosetta.basic._basic_.ProfTag.H...

HIERARCHY_RECV_COORDS = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHY_SEND_COORDS = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHY_SETUP_TO_RECV = rosetta.basic._basic_.ProfTag.HIERAR...

INITIALIZE = rosetta.basic._basic_.ProfTag.INITIALIZE

INITIALIZE_HIERARCHY = rosetta.basic._basic_.ProfTag.INITIALIZ...

INSERT_FRAGS = rosetta.basic._basic_.ProfTag.INSERT_FRAGS

JD2 = rosetta.basic._basic_.ProfTag.JD2

JD2_INIT_MOVER = rosetta.basic._basic_.ProfTag.JD2_INIT_MOVER

JD2_OUTPUT = rosetta.basic._basic_.ProfTag.JD2_OUTPUT

JD2_SILENT_OUTPUTTER = rosetta.basic._basic_.ProfTag.JD2_SILEN...

KDTREE_CONSTRUCT = rosetta.basic._basic_.ProfTag.KDTREE_CONSTRUCT

KDTREE_SEARCH = rosetta.basic._basic_.ProfTag.KDTREE_SEARCH

LIB_FULL_PATH = rosetta.basic._basic_.ProfTag.LIB_FULL_PATH

LOAD_HIERARCHY = rosetta.basic._basic_.ProfTag.LOAD_HIERARCHY

MAKE_BASE_PAIR_MOVE = rosetta.basic._basic_.ProfTag.MAKE_BASE_...

MAKE_BASE_STEP_MOVE = rosetta.basic._basic_.ProfTag.MAKE_BASE_...

MASTER_PROCESS_NEW_STRUCTURES = rosetta.basic._basic_.ProfTag....

MC_ACCEPT = rosetta.basic._basic_.ProfTag.MC_ACCEPT

MINMOVER_APPLY = rosetta.basic._basic_.ProfTag.MINMOVER_APPLY

MPIBARRIER = rosetta.basic._basic_.ProfTag.MPIBARRIER

MPIBARRIER_BEGIN = rosetta.basic._basic_.ProfTag.MPIBARRIER_BEGIN

MPIBARRIER_END = rosetta.basic._basic_.ProfTag.MPIBARRIER_END

MPICANONICALSAMPLING = rosetta.basic._basic_.ProfTag.MPICANONI...

MPICOMMCREATION = rosetta.basic._basic_.ProfTag.MPICOMMCREATION

MPIH_ADD_FIRST_STRUCTURE = rosetta.basic._basic_.ProfTag.MPIH_...

MPIH_EVAL_AGAINST_NBR = rosetta.basic._basic_.ProfTag.MPIH_EVA...

MPIH_EVAL_CHECK_PROGRESS = rosetta.basic._basic_.ProfTag.MPIH_...

MPIH_EVAL_COMMUNICATE_NEW = rosetta.basic._basic_.ProfTag.MPIH...

MPIH_PREPARE_WRITE_STRUCTURES = rosetta.basic._basic_.ProfTag....

MPIH_UPDATE_EVAL = rosetta.basic._basic_.ProfTag.MPIH_UPDATE_EVAL

MPIH_WRITE_STRUCT = rosetta.basic._basic_.ProfTag.MPIH_WRITE_S...

MPIPOOLCOMMUNICATION = rosetta.basic._basic_.ProfTag.MPIPOOLCO...

MPI_FILE_BUF = rosetta.basic._basic_.ProfTag.MPI_FILE_BUF

MPI_GATHER_BARRIER = rosetta.basic._basic_.ProfTag.MPI_GATHER_...

MPI_JD2_WAITS_FOR_ARCHIVE = rosetta.basic._basic_.ProfTag.MPI_...

MPI_MASTER_BCAST_COORDS = rosetta.basic._basic_.ProfTag.MPI_MA...

MPI_MASTER_BCAST_NEW_COMM_SIZE = rosetta.basic._basic_.ProfTag...

MPI_MASTER_BCAST_NEW_POOL_RANKS = rosetta.basic._basic_.ProfTa...

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD = rosetta.basic._basic_...

MPI_MASTER_BCAST_WINNING_RANKS = rosetta.basic._basic_.ProfTag...

MPI_MASTER_BCAST_WINNING_STRUCTURES = rosetta.basic._basic_.Pr...

MPI_NOTIFY_ARCHIVE = rosetta.basic._basic_.ProfTag.MPI_NOTIFY_...

MPI_POOL_MASTER_THINKS = rosetta.basic._basic_.ProfTag.MPI_POO...

MPI_POOL_SLAVE_THINKS = rosetta.basic._basic_.ProfTag.MPI_POOL...

MPI_SEND_ACCEPTED = rosetta.basic._basic_.ProfTag.MPI_SEND_ACC...

MPI_SEND_UPDATE = rosetta.basic._basic_.ProfTag.MPI_SEND_UPDATE

MPI_SLAVE_REPORT_NEW_COORDS = rosetta.basic._basic_.ProfTag.MP...

MPI_SLAVE_REPORT_SIZES = rosetta.basic._basic_.ProfTag.MPI_SLA...

MPI_SYNC_POOL_DIFF = rosetta.basic._basic_.ProfTag.MPI_SYNC_PO...

NOESY_ASSIGN_CALIBRATE = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_CHEMSHIFT = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_CP_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DECOY_COMP = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DIAGONAL = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_DISTANCE = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_DIST_APPLY = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DIST_CST_CAST = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_DIST_CST_EVAL = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_DIST_INIT = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_DIST_MAKE_POSE = rosetta.basic._basic_.ProfTag.NO...

NOESY_ASSIGN_DIST_PREP_SCORE = rosetta.basic._basic_.ProfTag.N...

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE = rosetta.basic._basic...

NOESY_ASSIGN_ELIMINATE = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_INITIAL = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_MAP2CB = rosetta.basic._basic_.ProfTag.NOESY_ASSI...

NOESY_ASSIGN_MAP2CB_NEW = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_NETWORK = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_NETWORK_COMPUTE_NK = rosetta.basic._basic_.ProfTa...

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA = rosetta.basic._basic_.Pr...

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE = rosetta.basic._basic...

NOESY_ASSIGN_NETWORK_PEAK_COUNT = rosetta.basic._basic_.ProfTa...

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_TOTAL = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_NMR_STRING = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_PA_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_READ_INPUT = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_REQUIRES_CB_MAPPING = rosetta.basic._basic_.ProfT...

NOESY_ASSIGN_SYMMETRY = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_TOTAL = rosetta.basic._basic_.ProfTag.NOESY_ASSIG...

NOESY_ASSIGN_UPDATE_PEAK_VOL = rosetta.basic._basic_.ProfTag.N...

NOESY_ASSIGN_WRITE_ASSIGNMENTS = rosetta.basic._basic_.ProfTag...

NOESY_ASSIGN_WRITE_CST = rosetta.basic._basic_.ProfTag.NOESY_A...

PACK_ROTAMERS = rosetta.basic._basic_.ProfTag.PACK_ROTAMERS

POOL_RMSD_ADD_STRUCTURE = rosetta.basic._basic_.ProfTag.POOL_R...

POOL_RMSD_EVALUATE = rosetta.basic._basic_.ProfTag.POOL_RMSD_E...

POOL_RMSD_MASTER_EVALUATE = rosetta.basic._basic_.ProfTag.POOL...

POSE_COPY = rosetta.basic._basic_.ProfTag.POSE_COPY

RG = rosetta.basic._basic_.ProfTag.RG

RG_LOCAL = rosetta.basic._basic_.ProfTag.RG_LOCAL

ROTAMER_TRIALS = rosetta.basic._basic_.ProfTag.ROTAMER_TRIALS

SAVE_ARCHIVE = rosetta.basic._basic_.ProfTag.SAVE_ARCHIVE

SAXS = rosetta.basic._basic_.ProfTag.SAXS

SCORE = rosetta.basic._basic_.ProfTag.SCORE

SCORE_BEGIN_NOTIFY = rosetta.basic._basic_.ProfTag.SCORE_BEGIN...

SCORE_DOT = rosetta.basic._basic_.ProfTag.SCORE_DOT

SCORE_END_NOTIFY = rosetta.basic._basic_.ProfTag.SCORE_END_NOTIFY

SCORE_FINALIZE = rosetta.basic._basic_.ProfTag.SCORE_FINALIZE

SCORE_LONG_RANGE_ENERGIES = rosetta.basic._basic_.ProfTag.SCOR...

SCORE_NEIGHBOR_ENERGIES = rosetta.basic._basic_.ProfTag.SCORE_...

SCORE_ONEBODY_ENERGIES = rosetta.basic._basic_.ProfTag.SCORE_O...

SCORE_SETUP = rosetta.basic._basic_.ProfTag.SCORE_SETUP

SECONDARY_STRUCTURE_ENERGY = rosetta.basic._basic_.ProfTag.SEC...

SECONDARY_STRUCTURE_HSPAIR_ENERGY = rosetta.basic._basic_.Prof...

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY = rosetta.basic....

SECONDARY_STRUCTURE_SSPAIR_ENERGY = rosetta.basic._basic_.Prof...

SEQUENCE_COMPARISON = rosetta.basic._basic_.ProfTag.SEQUENCE_C...

SETUP_NBLIST = rosetta.basic._basic_.ProfTag.SETUP_NBLIST

SIDECHAINMCMOVER = rosetta.basic._basic_.ProfTag.SIDECHAINMCMOVER

SIDECHAINMOVER = rosetta.basic._basic_.ProfTag.SIDECHAINMOVER

SILENT_FILL_POSE = rosetta.basic._basic_.ProfTag.SILENT_FILL_POSE

SILENT_FILL_STRUCT = rosetta.basic._basic_.ProfTag.SILENT_FILL...

SILENT_READ_TAG_TEST = rosetta.basic._basic_.ProfTag.SILENT_RE...

SILENT_SET_POSE_COORDS = rosetta.basic._basic_.ProfTag.SILENT_...

SIMANNEALING = rosetta.basic._basic_.ProfTag.SIMANNEALING

SIMPLEINTGRAPH = rosetta.basic._basic_.ProfTag.SIMPLEINTGRAPH

SORT_POOL = rosetta.basic._basic_.ProfTag.SORT_POOL

STAGE1 = rosetta.basic._basic_.ProfTag.STAGE1

STAGE2 = rosetta.basic._basic_.ProfTag.STAGE2

STAGE3 = rosetta.basic._basic_.ProfTag.STAGE3

STAGE4 = rosetta.basic._basic_.ProfTag.STAGE4

STAGE5 = rosetta.basic._basic_.ProfTag.STAGE5

TEST1 = rosetta.basic._basic_.ProfTag.TEST1

TEST2 = rosetta.basic._basic_.ProfTag.TEST2

TEST3 = rosetta.basic._basic_.ProfTag.TEST3

TEST4 = rosetta.basic._basic_.ProfTag.TEST4

TEST5 = rosetta.basic._basic_.ProfTag.TEST5

TOTAL = rosetta.basic._basic_.ProfTag.TOTAL

TRUNCATED_SCORE_EVALUATOR = rosetta.basic._basic_.ProfTag.TRUN...

UPDATE_RESIDUE_COORDINATES = rosetta.basic._basic_.ProfTag.UPD...

UPDATE_RESIDUE_NEIGHBORS = rosetta.basic._basic_.ProfTag.UPDAT...

UPDATE_RESIDUE_TORSIONS = rosetta.basic._basic_.ProfTag.UPDATE...

VDW_ENERGY = rosetta.basic._basic_.ProfTag.VDW_ENERGY

WRITE_DECOYS_TO_HIERARCHY = rosetta.basic._basic_.ProfTag.WRIT...

WRITE_TO_FILE = rosetta.basic._basic_.ProfTag.WRITE_TO_FILE

n_prof_tags = rosetta.basic._basic_.ProfTag.n_prof_tags

names = {'ABINITIO': rosetta.basic._basic_.ProfTag.ABINITIO, '...

values = {1: rosetta.basic._basic_.ProfTag.TEST1, 2: rosetta.b...

Properties

[hide private]

Inherited from unreachable.enum: name

Inherited from int: denominator, imag, numerator, real

Inherited from object: __class__

Class Variable Details

[hide private]

ARCHIVE_BLOCK_FILE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_BLOCK_FILE

ARCHIVE_CRITICAL_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_CRITICAL_JOBSCOMPLETE

ARCHIVE_EVALUATORS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVALUATORS

ARCHIVE_EVAL_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVAL_DECOYS

ARCHIVE_FILL_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_FILL_POSE

ARCHIVE_GEN_BATCH

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_GEN_BATCH

ARCHIVE_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_JOBSCOMPLETE

ARCHIVE_READ_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_READ_DECOYS

ARCHIVE_SCORE_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SCORE_POSE

ARCHIVE_SYNC_BATCHES

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SYNC_BATCHES

ATOM_TREE_UPDATE_INTERNAL_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_INTERNAL_COORDS

ATOM_TREE_UPDATE_XYZ_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_XYZ_COORDS

CANONICALMOVER_WRITE_TO_FILE

Value:

rosetta.basic._basic_.ProfTag.CANONICALMOVER_WRITE_TO_FILE

CA_DME_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_DME_EVALUATION

CA_RMSD_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_RMSD_EVALUATION

CHEMICAL_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.CHEMICAL_MAKE_POSE

CONFORMATION_COPY

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_COPY

CONFORMATION_DETECT_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_DETECT_DISULF

CONFORMATION_FIX_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_FIX_DISULF

CONSTRAINT_SET_COPY

Value:

rosetta.basic._basic_.ProfTag.CONSTRAINT_SET_COPY

CONSTRUCT_DISTANCE_MATRIX

Value:

rosetta.basic._basic_.ProfTag.CONSTRUCT_DISTANCE_MATRIX

ENERGY_ENVPAIR_POTENTIAL

Value:

rosetta.basic._basic_.ProfTag.ENERGY_ENVPAIR_POTENTIAL

ENERGY_GRAPH_COPY

Value:

rosetta.basic._basic_.ProfTag.ENERGY_GRAPH_COPY

FACTS_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.FACTS_GET_ALL_BORN_RADII

FACTS_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_BACKGROUND_ENERGIES

FACTS_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_PAIR_ENERGIES

FACTS_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.FACTS_SETUP_FOR_PACKING

FARRAY_MANIPULATION

Value:

rosetta.basic._basic_.ProfTag.FARRAY_MANIPULATION

FIND_SUGAR_AND_SUITE_FRAGS_I

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_I

FIND_SUGAR_AND_SUITE_FRAGS_II

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_II

FRAGMENTPICKING_ATOMPAIR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_ATOMPAIR_SCORE

FRAGMENTPICKING_CANDIDATES_COLLECTING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CANDIDATES_COLLECTING

FRAGMENTPICKING_CS_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CS_SCORE

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

FRAGMENTPICKING_PHIPSI_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PHIPSI_SCORE

FRAGMENTPICKING_PROFILE_CAHING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_CAHING

FRAGMENTPICKING_PROFILE_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_SCORE

FRAGMENTPICKING_READ_VALL

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_READ_VALL

FRAGMENTPICKING_SECONDARY_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_SECONDARY_SCORE

GB_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.GB_GET_ALL_BORN_RADII

GB_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.GB_SETUP_FOR_PACKING

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

GEN_BORN_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_PAIR_ENERGIES

HIERARCHICAL_ADD_ELEM_TO_CACHE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ADD_ELEM_TO_CACHE

HIERARCHICAL_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_EVALUATE

HIERARCHICAL_FIND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND

HIERARCHICAL_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND_ADDRESS

HIERARCHICAL_POOL_SIZE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_POOL_SIZE

HIERARCHICAL_ROUND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ROUND

HIERARCHICAL_SORT_ADDRESSES

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_SORT_ADDRESSES

HIERARCHY_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_FIND_ADDRESS

HIERARCHY_GET_NEXT_CANDIDATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_GET_NEXT_CANDIDATE

HIERARCHY_RECV_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_RECV_COORDS

HIERARCHY_SEND_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SEND_COORDS

HIERARCHY_SETUP_TO_RECV

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SETUP_TO_RECV

INITIALIZE_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.INITIALIZE_HIERARCHY

JD2_SILENT_OUTPUTTER

Value:

rosetta.basic._basic_.ProfTag.JD2_SILENT_OUTPUTTER

MAKE_BASE_PAIR_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_PAIR_MOVE

MAKE_BASE_STEP_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_STEP_MOVE

MASTER_PROCESS_NEW_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MASTER_PROCESS_NEW_STRUCTURES

MPICANONICALSAMPLING

Value:

rosetta.basic._basic_.ProfTag.MPICANONICALSAMPLING

MPIH_ADD_FIRST_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.MPIH_ADD_FIRST_STRUCTURE

MPIH_EVAL_AGAINST_NBR

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_AGAINST_NBR

MPIH_EVAL_CHECK_PROGRESS

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_CHECK_PROGRESS

MPIH_EVAL_COMMUNICATE_NEW

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_COMMUNICATE_NEW

MPIH_PREPARE_WRITE_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPIH_PREPARE_WRITE_STRUCTURES

MPIH_WRITE_STRUCT

Value:

rosetta.basic._basic_.ProfTag.MPIH_WRITE_STRUCT

MPIPOOLCOMMUNICATION

Value:

rosetta.basic._basic_.ProfTag.MPIPOOLCOMMUNICATION

MPI_GATHER_BARRIER

Value:

rosetta.basic._basic_.ProfTag.MPI_GATHER_BARRIER

MPI_JD2_WAITS_FOR_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_JD2_WAITS_FOR_ARCHIVE

MPI_MASTER_BCAST_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_COORDS

MPI_MASTER_BCAST_NEW_COMM_SIZE

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_COMM_SIZE

MPI_MASTER_BCAST_NEW_POOL_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_POOL_RANKS

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

MPI_MASTER_BCAST_WINNING_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_RANKS

MPI_MASTER_BCAST_WINNING_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_STRUCTURES

MPI_NOTIFY_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_NOTIFY_ARCHIVE

MPI_POOL_MASTER_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_MASTER_THINKS

MPI_POOL_SLAVE_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_SLAVE_THINKS

MPI_SEND_ACCEPTED

Value:

rosetta.basic._basic_.ProfTag.MPI_SEND_ACCEPTED

MPI_SLAVE_REPORT_NEW_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_NEW_COORDS

MPI_SLAVE_REPORT_SIZES

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_SIZES

MPI_SYNC_POOL_DIFF

Value:

rosetta.basic._basic_.ProfTag.MPI_SYNC_POOL_DIFF

NOESY_ASSIGN_CALIBRATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CALIBRATE

NOESY_ASSIGN_CHEMSHIFT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CHEMSHIFT

NOESY_ASSIGN_CP_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CP_GEN_CST

NOESY_ASSIGN_DECOY_COMP

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DECOY_COMP

NOESY_ASSIGN_DIAGONAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIAGONAL

NOESY_ASSIGN_DISTANCE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DISTANCE

NOESY_ASSIGN_DIST_APPLY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_APPLY

NOESY_ASSIGN_DIST_CST_CAST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_CAST

NOESY_ASSIGN_DIST_CST_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_EVAL

NOESY_ASSIGN_DIST_INIT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_INIT

NOESY_ASSIGN_DIST_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_MAKE_POSE

NOESY_ASSIGN_DIST_PREP_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_PREP_SCORE

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

NOESY_ASSIGN_ELIMINATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_ELIMINATE

NOESY_ASSIGN_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_GEN_CST

NOESY_ASSIGN_INITIAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_INITIAL

NOESY_ASSIGN_MAP2CB

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB

NOESY_ASSIGN_MAP2CB_NEW

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB_NEW

NOESY_ASSIGN_NETWORK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK

NOESY_ASSIGN_NETWORK_COMPUTE_NK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_COMPUTE_NK

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

NOESY_ASSIGN_NETWORK_PEAK_COUNT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

NOESY_ASSIGN_NETWORK_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_TOTAL

NOESY_ASSIGN_NMR_STRING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NMR_STRING

NOESY_ASSIGN_PA_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_PA_GEN_CST

NOESY_ASSIGN_READ_INPUT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_READ_INPUT

NOESY_ASSIGN_REQUIRES_CB_MAPPING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_REQUIRES_CB_MAPPING

NOESY_ASSIGN_SYMMETRY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_SYMMETRY

NOESY_ASSIGN_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_TOTAL

NOESY_ASSIGN_UPDATE_PEAK_VOL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_UPDATE_PEAK_VOL

NOESY_ASSIGN_WRITE_ASSIGNMENTS

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_ASSIGNMENTS

NOESY_ASSIGN_WRITE_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_CST

POOL_RMSD_ADD_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_ADD_STRUCTURE

POOL_RMSD_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_EVALUATE

POOL_RMSD_MASTER_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_MASTER_EVALUATE

SCORE_BEGIN_NOTIFY

Value:

rosetta.basic._basic_.ProfTag.SCORE_BEGIN_NOTIFY

SCORE_LONG_RANGE_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_LONG_RANGE_ENERGIES

SCORE_NEIGHBOR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_NEIGHBOR_ENERGIES

SCORE_ONEBODY_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_ONEBODY_ENERGIES

SECONDARY_STRUCTURE_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_ENERGY

SECONDARY_STRUCTURE_HSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_HSPAIR_ENERGY

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_E
NERGY

SECONDARY_STRUCTURE_SSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SSPAIR_ENERGY

SEQUENCE_COMPARISON

Value:

rosetta.basic._basic_.ProfTag.SEQUENCE_COMPARISON

SILENT_FILL_STRUCT

Value:

rosetta.basic._basic_.ProfTag.SILENT_FILL_STRUCT

SILENT_READ_TAG_TEST

Value:

rosetta.basic._basic_.ProfTag.SILENT_READ_TAG_TEST

SILENT_SET_POSE_COORDS

Value:

rosetta.basic._basic_.ProfTag.SILENT_SET_POSE_COORDS

TRUNCATED_SCORE_EVALUATOR

Value:

rosetta.basic._basic_.ProfTag.TRUNCATED_SCORE_EVALUATOR

UPDATE_RESIDUE_COORDINATES

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_COORDINATES

UPDATE_RESIDUE_NEIGHBORS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_NEIGHBORS

UPDATE_RESIDUE_TORSIONS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_TORSIONS

WRITE_DECOYS_TO_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.WRITE_DECOYS_TO_HIERARCHY

names

Value:

{'ABINITIO': rosetta.basic._basic_.ProfTag.ABINITIO,
 'APPLY_BB_MOVE': rosetta.basic._basic_.ProfTag.APPLY_BB_MOVE,
 'APPLY_MOVE': rosetta.basic._basic_.ProfTag.APPLY_MOVE,
 'APPLY_SC_MOVE': rosetta.basic._basic_.ProfTag.APPLY_SC_MOVE,
 'ARCHIVE_BLOCK_FILE': rosetta.basic._basic_.ProfTag.ARCHIVE_BLOCK_FIL
E,
 'ARCHIVE_CRITICAL_JOBSCOMPLETE': rosetta.basic._basic_.ProfTag.ARCHIV
E_CRITICAL_JOBSCOMPLETE,
...

values

Value:

{1: rosetta.basic._basic_.ProfTag.TEST1,
 2: rosetta.basic._basic_.ProfTag.TEST2,
 3: rosetta.basic._basic_.ProfTag.TEST3,
 4: rosetta.basic._basic_.ProfTag.TEST4,
 5: rosetta.basic._basic_.ProfTag.TEST5,
 6: rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_INTERNAL_COORDS,
 7: rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_XYZ_COORDS,
 8: rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_TORSIONS,
...