Python Module Index

p
 
p
pyrosetta
    pyrosetta.bindings
    pyrosetta.bindings.energies
    pyrosetta.bindings.homogeneous_transform
    pyrosetta.bindings.pose
    pyrosetta.bindings.rt
    pyrosetta.bindings.utility
    pyrosetta.distributed
    pyrosetta.distributed.dask
    pyrosetta.distributed.docs
    pyrosetta.distributed.io
    pyrosetta.distributed.packed_pose
    pyrosetta.distributed.packed_pose.core
    pyrosetta.distributed.tasks
    pyrosetta.distributed.utility
    pyrosetta.distributed.utility.pickle
    pyrosetta.io
    pyrosetta.io.silent_file_map
    pyrosetta.logging_support
    pyrosetta.network
    pyrosetta.network.rosetta_udp_to_tcp_bridge
    pyrosetta.numeric
    pyrosetta.numeric.alignment
    pyrosetta.protocols
    pyrosetta.protocols.h5_fragment_store_provider
    pyrosetta.rosetta
    pyrosetta.rosetta.basic
    pyrosetta.rosetta.basic.citation_manager
    pyrosetta.rosetta.basic.database
    pyrosetta.rosetta.basic.database.insert_statement_generator
    pyrosetta.rosetta.basic.database.schema_generator
    pyrosetta.rosetta.basic.datacache
    pyrosetta.rosetta.basic.gpu
    pyrosetta.rosetta.basic.mpi
    pyrosetta.rosetta.basic.options
    pyrosetta.rosetta.basic.random
    pyrosetta.rosetta.basic.resource_manager
    pyrosetta.rosetta.basic.resource_manager.locator
    pyrosetta.rosetta.basic.sampling
    pyrosetta.rosetta.basic.sampling.orientations
    pyrosetta.rosetta.basic.svd
    pyrosetta.rosetta.basic.tensorflow_manager
    pyrosetta.rosetta.basic.thread_manager
    pyrosetta.rosetta.core
    pyrosetta.rosetta.core.chemical
    pyrosetta.rosetta.core.chemical.carbohydrates
    pyrosetta.rosetta.core.chemical.element
    pyrosetta.rosetta.core.chemical.gasteiger
    pyrosetta.rosetta.core.chemical.io
    pyrosetta.rosetta.core.chemical.mainchain_potential
    pyrosetta.rosetta.core.chemical.mmCIF
    pyrosetta.rosetta.core.chemical.NucleotideTools
    pyrosetta.rosetta.core.chemical.orbitals
    pyrosetta.rosetta.core.chemical.rdkit
    pyrosetta.rosetta.core.chemical.rings
    pyrosetta.rosetta.core.chemical.rna
    pyrosetta.rosetta.core.chemical.rotamers
    pyrosetta.rosetta.core.chemical.sdf
    pyrosetta.rosetta.core.conformation
    pyrosetta.rosetta.core.conformation.carbohydrates
    pyrosetta.rosetta.core.conformation.membrane
    pyrosetta.rosetta.core.conformation.orbitals
    pyrosetta.rosetta.core.conformation.parametric
    pyrosetta.rosetta.core.conformation.residue_datacache
    pyrosetta.rosetta.core.conformation.RotamerSetCacheableDataType
    pyrosetta.rosetta.core.conformation.signals
    pyrosetta.rosetta.core.conformation.symmetry
    pyrosetta.rosetta.core.energy_methods
    pyrosetta.rosetta.core.energy_methods.dfire
    pyrosetta.rosetta.core.environment
    pyrosetta.rosetta.core.enzymes
    pyrosetta.rosetta.core.fragment
    pyrosetta.rosetta.core.fragment.picking_old
    pyrosetta.rosetta.core.fragment.picking_old.concepts
    pyrosetta.rosetta.core.fragment.picking_old.vall
    pyrosetta.rosetta.core.fragment.picking_old.vall.eval
    pyrosetta.rosetta.core.fragment.picking_old.vall.gen
    pyrosetta.rosetta.core.fragment.picking_old.vall.scores
    pyrosetta.rosetta.core.fragment.rna
    pyrosetta.rosetta.core.grid
    pyrosetta.rosetta.core.id
    pyrosetta.rosetta.core.import_pose
    pyrosetta.rosetta.core.import_pose.atom_tree_diffs
    pyrosetta.rosetta.core.import_pose.libraries
    pyrosetta.rosetta.core.import_pose.options
    pyrosetta.rosetta.core.import_pose.pose_stream
    pyrosetta.rosetta.core.init
    pyrosetta.rosetta.core.io
    pyrosetta.rosetta.core.io.carbohydrates
    pyrosetta.rosetta.core.io.external
    pyrosetta.rosetta.core.io.mmcif
    pyrosetta.rosetta.core.io.mmtf
    pyrosetta.rosetta.core.io.nmr
    pyrosetta.rosetta.core.io.pdb
    pyrosetta.rosetta.core.io.pose_from_sfr
    pyrosetta.rosetta.core.io.pose_to_sfr
    pyrosetta.rosetta.core.io.PositionDdGInfo
    pyrosetta.rosetta.core.io.raw_data
    pyrosetta.rosetta.core.io.rcsb
    pyrosetta.rosetta.core.io.rna
    pyrosetta.rosetta.core.io.sequence_comparation
    pyrosetta.rosetta.core.io.serialization
    pyrosetta.rosetta.core.io.silent
    pyrosetta.rosetta.core.kinematics
    pyrosetta.rosetta.core.kinematics.jacobian
    pyrosetta.rosetta.core.kinematics.tree
    pyrosetta.rosetta.core.membrane
    pyrosetta.rosetta.core.optimization
    pyrosetta.rosetta.core.optimization.symmetry
    pyrosetta.rosetta.core.pack
    pyrosetta.rosetta.core.pack.annealer
    pyrosetta.rosetta.core.pack.dunbrack
    pyrosetta.rosetta.core.pack.dunbrack.cenrot
    pyrosetta.rosetta.core.pack.guidance_scoreterms
    pyrosetta.rosetta.core.pack.guidance_scoreterms.approximate_buried_unsat_penalty
    pyrosetta.rosetta.core.pack.guidance_scoreterms.buried_unsat_penalty
    pyrosetta.rosetta.core.pack.guidance_scoreterms.buried_unsat_penalty.graph
    pyrosetta.rosetta.core.pack.guidance_scoreterms.hbnet_energy
    pyrosetta.rosetta.core.pack.guidance_scoreterms.sap
    pyrosetta.rosetta.core.pack.guidance_scoreterms.voids_penalty_energy
    pyrosetta.rosetta.core.pack.hbonds
    pyrosetta.rosetta.core.pack.interaction_graph
    pyrosetta.rosetta.core.pack.palette
    pyrosetta.rosetta.core.pack.rotamer_set
    pyrosetta.rosetta.core.pack.rotamer_set.symmetry
    pyrosetta.rosetta.core.pack.rotamers
    pyrosetta.rosetta.core.pack.scmin
    pyrosetta.rosetta.core.pack.task
    pyrosetta.rosetta.core.pack.task.operation
    pyrosetta.rosetta.core.pack.task.residue_selector
    pyrosetta.rosetta.core.pack.task.rna
    pyrosetta.rosetta.core.pack_basic
    pyrosetta.rosetta.core.pose
    pyrosetta.rosetta.core.pose.carbohydrates
    pyrosetta.rosetta.core.pose.copydofs
    pyrosetta.rosetta.core.pose.datacache
    pyrosetta.rosetta.core.pose.full_model_info
    pyrosetta.rosetta.core.pose.metrics
    pyrosetta.rosetta.core.pose.metrics.simple_calculators
    pyrosetta.rosetta.core.pose.motif
    pyrosetta.rosetta.core.pose.ncbb
    pyrosetta.rosetta.core.pose.reference_pose
    pyrosetta.rosetta.core.pose.rna
    pyrosetta.rosetta.core.pose.rna.secstruct_legacy
    pyrosetta.rosetta.core.pose.signals
    pyrosetta.rosetta.core.pose.symmetry
    pyrosetta.rosetta.core.pose.toolbox
    pyrosetta.rosetta.core.scoring
    pyrosetta.rosetta.core.scoring.aa_composition_energy
    pyrosetta.rosetta.core.scoring.annealing
    pyrosetta.rosetta.core.scoring.atomic_depth
    pyrosetta.rosetta.core.scoring.bin_transitions
    pyrosetta.rosetta.core.scoring.carbohydrates
    pyrosetta.rosetta.core.scoring.carbon_hbonds
    pyrosetta.rosetta.core.scoring.constraints
    pyrosetta.rosetta.core.scoring.cryst
    pyrosetta.rosetta.core.scoring.custom_pair_distance
    pyrosetta.rosetta.core.scoring.disulfides
    pyrosetta.rosetta.core.scoring.dna
    pyrosetta.rosetta.core.scoring.dssp
    pyrosetta.rosetta.core.scoring.elec
    pyrosetta.rosetta.core.scoring.elec.electrie
    pyrosetta.rosetta.core.scoring.electron_density
    pyrosetta.rosetta.core.scoring.electron_density_atomwise
    pyrosetta.rosetta.core.scoring.EnergiesCacheableDataType
    pyrosetta.rosetta.core.scoring.epr_deer
    pyrosetta.rosetta.core.scoring.epr_deer.metrics
    pyrosetta.rosetta.core.scoring.etable
    pyrosetta.rosetta.core.scoring.etable.coulomb
    pyrosetta.rosetta.core.scoring.etable.count_pair
    pyrosetta.rosetta.core.scoring.etable.etrie
    pyrosetta.rosetta.core.scoring.facts
    pyrosetta.rosetta.core.scoring.fiber_diffraction
    pyrosetta.rosetta.core.scoring.func
    pyrosetta.rosetta.core.scoring.geometric_solvation
    pyrosetta.rosetta.core.scoring.hbonds
    pyrosetta.rosetta.core.scoring.hbonds.graph
    pyrosetta.rosetta.core.scoring.hbonds.hbtrie
    pyrosetta.rosetta.core.scoring.interface_
    pyrosetta.rosetta.core.scoring.lkball
    pyrosetta.rosetta.core.scoring.lkball.lkbtrie
    pyrosetta.rosetta.core.scoring.loop_graph
    pyrosetta.rosetta.core.scoring.loop_graph.evaluator
    pyrosetta.rosetta.core.scoring.magnesium
    pyrosetta.rosetta.core.scoring.membrane
    pyrosetta.rosetta.core.scoring.methods
    pyrosetta.rosetta.core.scoring.methods.dfire
    pyrosetta.rosetta.core.scoring.mhc_epitope_energy
    pyrosetta.rosetta.core.scoring.mm
    pyrosetta.rosetta.core.scoring.mm.mmtrie
    pyrosetta.rosetta.core.scoring.motif
    pyrosetta.rosetta.core.scoring.netcharge_energy
    pyrosetta.rosetta.core.scoring.nmr
    pyrosetta.rosetta.core.scoring.nmr.pcs
    pyrosetta.rosetta.core.scoring.nmr.pre
    pyrosetta.rosetta.core.scoring.nmr.rdc
    pyrosetta.rosetta.core.scoring.nv
    pyrosetta.rosetta.core.scoring.orbitals
    pyrosetta.rosetta.core.scoring.packing
    pyrosetta.rosetta.core.scoring.packstat
    pyrosetta.rosetta.core.scoring.packstat.old
    pyrosetta.rosetta.core.scoring.power_diagram
    pyrosetta.rosetta.core.scoring.rna
    pyrosetta.rosetta.core.scoring.rna.chemical_shift
    pyrosetta.rosetta.core.scoring.rna.data
    pyrosetta.rosetta.core.scoring.sasa
    pyrosetta.rosetta.core.scoring.saxs
    pyrosetta.rosetta.core.scoring.sc
    pyrosetta.rosetta.core.scoring.solid_surface
    pyrosetta.rosetta.core.scoring.sym_e
    pyrosetta.rosetta.core.scoring.symmetry
    pyrosetta.rosetta.core.scoring.trie
    pyrosetta.rosetta.core.scoring.vdwaals
    pyrosetta.rosetta.core.select
    pyrosetta.rosetta.core.select.jump_selector
    pyrosetta.rosetta.core.select.movemap
    pyrosetta.rosetta.core.select.residue_selector
    pyrosetta.rosetta.core.select.residue_selector.slice_enums
    pyrosetta.rosetta.core.select.util
    pyrosetta.rosetta.core.sequence
    pyrosetta.rosetta.core.simple_metrics
    pyrosetta.rosetta.core.simple_metrics.composite_metrics
    pyrosetta.rosetta.core.simple_metrics.metrics
    pyrosetta.rosetta.core.simple_metrics.per_residue_metrics
    pyrosetta.rosetta.core.util
    pyrosetta.rosetta.cppdb
    pyrosetta.rosetta.cppdb.backend
    pyrosetta.rosetta.numeric
    pyrosetta.rosetta.numeric.alignment
    pyrosetta.rosetta.numeric.conversions
    pyrosetta.rosetta.numeric.crick_equations
    pyrosetta.rosetta.numeric.expression_parser
    pyrosetta.rosetta.numeric.fourier
    pyrosetta.rosetta.numeric.geometry
    pyrosetta.rosetta.numeric.geometry.hashing
    pyrosetta.rosetta.numeric.histograms
    pyrosetta.rosetta.numeric.interpolation
    pyrosetta.rosetta.numeric.interpolation.spline
    pyrosetta.rosetta.numeric.kdtree
    pyrosetta.rosetta.numeric.kinematic_closure
    pyrosetta.rosetta.numeric.kinematic_closure.radians
    pyrosetta.rosetta.numeric.linear_algebra
    pyrosetta.rosetta.numeric.model_quality
    pyrosetta.rosetta.numeric.nls
    pyrosetta.rosetta.numeric.random
    pyrosetta.rosetta.numeric.statistics
    pyrosetta.rosetta.ObjexxFCL
    pyrosetta.rosetta.ObjexxFCL.bit
    pyrosetta.rosetta.ObjexxFCL.format
    pyrosetta.rosetta.ObjexxFCL.Fortran
    pyrosetta.rosetta.ObjexxFCL.internal
    pyrosetta.rosetta.ObjexxFCL.internal.ObserverMediator
    pyrosetta.rosetta.protocols
    pyrosetta.rosetta.protocols.aa_composition
    pyrosetta.rosetta.protocols.abinitio
    pyrosetta.rosetta.protocols.abinitio.abscript
    pyrosetta.rosetta.protocols.analysis
    pyrosetta.rosetta.protocols.analysis.burial_metrics
    pyrosetta.rosetta.protocols.analysis.simple_metrics
    pyrosetta.rosetta.protocols.anchored_design
    pyrosetta.rosetta.protocols.antibody
    pyrosetta.rosetta.protocols.antibody.clusters
    pyrosetta.rosetta.protocols.antibody.constraints
    pyrosetta.rosetta.protocols.antibody.design
    pyrosetta.rosetta.protocols.antibody.grafting
    pyrosetta.rosetta.protocols.antibody.residue_selector
    pyrosetta.rosetta.protocols.antibody.snugdock
    pyrosetta.rosetta.protocols.antibody.task_operations
    pyrosetta.rosetta.protocols.antibody_legacy
    pyrosetta.rosetta.protocols.backbone_moves
    pyrosetta.rosetta.protocols.backbone_moves.local_backbone_mover
    pyrosetta.rosetta.protocols.backbone_moves.local_backbone_mover.free_peptide_movers
    pyrosetta.rosetta.protocols.backbone_moves.local_backbone_mover.gap_solution_pickers
    pyrosetta.rosetta.protocols.backrub
    pyrosetta.rosetta.protocols.branch_angle
    pyrosetta.rosetta.protocols.buns
    pyrosetta.rosetta.protocols.calc_taskop_filters
    pyrosetta.rosetta.protocols.calc_taskop_movers
    pyrosetta.rosetta.protocols.canonical_sampling
    pyrosetta.rosetta.protocols.canonical_sampling.mc_convergence_checks
    pyrosetta.rosetta.protocols.carbohydrates
    pyrosetta.rosetta.protocols.cartesian
    pyrosetta.rosetta.protocols.checkpoint
    pyrosetta.rosetta.protocols.chemically_conjugated_docking
    pyrosetta.rosetta.protocols.chromophore
    pyrosetta.rosetta.protocols.cluster
    pyrosetta.rosetta.protocols.cluster.calibur
    pyrosetta.rosetta.protocols.comparative_modeling
    pyrosetta.rosetta.protocols.comparative_modeling.features
    pyrosetta.rosetta.protocols.constel
    pyrosetta.rosetta.protocols.constraint_filters
    pyrosetta.rosetta.protocols.constraint_generator
    pyrosetta.rosetta.protocols.constraint_movers
    pyrosetta.rosetta.protocols.constraints_additional
    pyrosetta.rosetta.protocols.contact_map
    pyrosetta.rosetta.protocols.coupled_moves
    pyrosetta.rosetta.protocols.cryst
    pyrosetta.rosetta.protocols.cutoutdomain
    pyrosetta.rosetta.protocols.cyclic_peptide
    pyrosetta.rosetta.protocols.cyclic_peptide.crosslinker
    pyrosetta.rosetta.protocols.cyclic_peptide_predict
    pyrosetta.rosetta.protocols.ddG
    pyrosetta.rosetta.protocols.ddg
    pyrosetta.rosetta.protocols.ddg.CartesianddG
    pyrosetta.rosetta.protocols.denovo_design
    pyrosetta.rosetta.protocols.denovo_design.architects
    pyrosetta.rosetta.protocols.denovo_design.calculators
    pyrosetta.rosetta.protocols.denovo_design.components
    pyrosetta.rosetta.protocols.denovo_design.connection
    pyrosetta.rosetta.protocols.denovo_design.constraints
    pyrosetta.rosetta.protocols.denovo_design.filters
    pyrosetta.rosetta.protocols.denovo_design.movers
    pyrosetta.rosetta.protocols.denovo_design.residue_selectors
    pyrosetta.rosetta.protocols.denovo_design.task_operations
    pyrosetta.rosetta.protocols.design_opt
    pyrosetta.rosetta.protocols.dna
    pyrosetta.rosetta.protocols.dna_dock
    pyrosetta.rosetta.protocols.docking
    pyrosetta.rosetta.protocols.docking.membrane
    pyrosetta.rosetta.protocols.docking.stateless
    pyrosetta.rosetta.protocols.domain_assembly
    pyrosetta.rosetta.protocols.drug_design
    pyrosetta.rosetta.protocols.electron_density
    pyrosetta.rosetta.protocols.energy_based_clustering
    pyrosetta.rosetta.protocols.environment
    pyrosetta.rosetta.protocols.environment.claims
    pyrosetta.rosetta.protocols.enzdes
    pyrosetta.rosetta.protocols.enzdes.enzutil
    pyrosetta.rosetta.protocols.enzymatic_movers
    pyrosetta.rosetta.protocols.evaluation
    pyrosetta.rosetta.protocols.evolution
    pyrosetta.rosetta.protocols.evolution.AlignmentCleanerTools
    pyrosetta.rosetta.protocols.farnesyl
    pyrosetta.rosetta.protocols.features
    pyrosetta.rosetta.protocols.features.helixAssembly
    pyrosetta.rosetta.protocols.features.RelevantResiduesMode
    pyrosetta.rosetta.protocols.features.strand_assembly
    pyrosetta.rosetta.protocols.fibril
    pyrosetta.rosetta.protocols.filters
    pyrosetta.rosetta.protocols.fldsgn
    pyrosetta.rosetta.protocols.fldsgn.filters
    pyrosetta.rosetta.protocols.fldsgn.potentials
    pyrosetta.rosetta.protocols.fldsgn.potentials.sspot
    pyrosetta.rosetta.protocols.fldsgn.topology
    pyrosetta.rosetta.protocols.flexpack
    pyrosetta.rosetta.protocols.flexpack.annealer
    pyrosetta.rosetta.protocols.flexpack.interaction_graph
    pyrosetta.rosetta.protocols.flexpack.rotamer_set
    pyrosetta.rosetta.protocols.flexpep_docking
    pyrosetta.rosetta.protocols.floppy_tail
    pyrosetta.rosetta.protocols.flxbb
    pyrosetta.rosetta.protocols.fold_from_loops
    pyrosetta.rosetta.protocols.fold_from_loops.constraint_generator
    pyrosetta.rosetta.protocols.fold_from_loops.filters
    pyrosetta.rosetta.protocols.fold_from_loops.movers
    pyrosetta.rosetta.protocols.fold_from_loops.selectors
    pyrosetta.rosetta.protocols.fold_from_loops.utils
    pyrosetta.rosetta.protocols.forge
    pyrosetta.rosetta.protocols.forge.build
    pyrosetta.rosetta.protocols.forge.build.BuildInstructionState
    pyrosetta.rosetta.protocols.forge.build.SegmentInsertConnectionScheme
    pyrosetta.rosetta.protocols.forge.components
    pyrosetta.rosetta.protocols.forge.components.VLB_VallMemoryUsage
    pyrosetta.rosetta.protocols.forge.constraints
    pyrosetta.rosetta.protocols.forge.methods
    pyrosetta.rosetta.protocols.forge.remodel
    pyrosetta.rosetta.protocols.frag_picker
    pyrosetta.rosetta.protocols.frag_picker.nonlocal
    pyrosetta.rosetta.protocols.frag_picker.quota
    pyrosetta.rosetta.protocols.frag_picker.scores
    pyrosetta.rosetta.protocols.frags
    pyrosetta.rosetta.protocols.generalized_kinematic_closure
    pyrosetta.rosetta.protocols.generalized_kinematic_closure.filter
    pyrosetta.rosetta.protocols.generalized_kinematic_closure.perturber
    pyrosetta.rosetta.protocols.generalized_kinematic_closure.selector
    pyrosetta.rosetta.protocols.genetic_algorithm
    pyrosetta.rosetta.protocols.geometry
    pyrosetta.rosetta.protocols.glycan_docking
    pyrosetta.rosetta.protocols.glycopeptide_docking
    pyrosetta.rosetta.protocols.grafting
    pyrosetta.rosetta.protocols.grafting.simple_movers
    pyrosetta.rosetta.protocols.hbnet
    pyrosetta.rosetta.protocols.helical_bundle
    pyrosetta.rosetta.protocols.helical_bundle.parameters
    pyrosetta.rosetta.protocols.helical_bundle_predict
    pyrosetta.rosetta.protocols.helix_capper
    pyrosetta.rosetta.protocols.hotspot_hashing
    pyrosetta.rosetta.protocols.hotspot_hashing.movers
    pyrosetta.rosetta.protocols.hybridization
    pyrosetta.rosetta.protocols.hydrate
    pyrosetta.rosetta.protocols.idealize
    pyrosetta.rosetta.protocols.indel
    pyrosetta.rosetta.protocols.indexed_structure_store
    pyrosetta.rosetta.protocols.indexed_structure_store.filters
    pyrosetta.rosetta.protocols.indexed_structure_store.movers
    pyrosetta.rosetta.protocols.indexed_structure_store.search
    pyrosetta.rosetta.protocols.init
    pyrosetta.rosetta.protocols.interface
    pyrosetta.rosetta.protocols.jd2
    pyrosetta.rosetta.protocols.jd2.archive
    pyrosetta.rosetta.protocols.jd2.JobInputterInputSource
    pyrosetta.rosetta.protocols.jd3
    pyrosetta.rosetta.protocols.jd3.chunk_library
    pyrosetta.rosetta.protocols.jd3.chunk_library_inputters
    pyrosetta.rosetta.protocols.jd3.dag_node_managers
    pyrosetta.rosetta.protocols.jd3.deallocation
    pyrosetta.rosetta.protocols.jd3.full_model
    pyrosetta.rosetta.protocols.jd3.full_model_inputters
    pyrosetta.rosetta.protocols.jd3.job_distributors
    pyrosetta.rosetta.protocols.jd3.job_results
    pyrosetta.rosetta.protocols.jd3.job_summaries
    pyrosetta.rosetta.protocols.jd3.jobs
    pyrosetta.rosetta.protocols.jd3.output
    pyrosetta.rosetta.protocols.jd3.pose_inputters
    pyrosetta.rosetta.protocols.jd3.pose_outputters
    pyrosetta.rosetta.protocols.jd3.standard
    pyrosetta.rosetta.protocols.jobdist
    pyrosetta.rosetta.protocols.jumping
    pyrosetta.rosetta.protocols.kinematic_closure
    pyrosetta.rosetta.protocols.kinematic_closure.perturbers
    pyrosetta.rosetta.protocols.kinematic_closure.pivot_pickers
    pyrosetta.rosetta.protocols.kinematic_closure.solution_pickers
    pyrosetta.rosetta.protocols.kinmatch
    pyrosetta.rosetta.protocols.legacy_sewing
    pyrosetta.rosetta.protocols.legacy_sewing.sampling
    pyrosetta.rosetta.protocols.legacy_sewing.sampling.requirements
    pyrosetta.rosetta.protocols.legacy_sewing.scoring
    pyrosetta.rosetta.protocols.ligand_docking
    pyrosetta.rosetta.protocols.ligand_docking.ga_ligand_dock
    pyrosetta.rosetta.protocols.ligand_docking.ligand_options
    pyrosetta.rosetta.protocols.ligand_docking.rdf
    pyrosetta.rosetta.protocols.loop_build
    pyrosetta.rosetta.protocols.loop_grower
    pyrosetta.rosetta.protocols.loop_modeler
    pyrosetta.rosetta.protocols.loop_modeler.perturbers
    pyrosetta.rosetta.protocols.loop_modeling
    pyrosetta.rosetta.protocols.loop_modeling.refiners
    pyrosetta.rosetta.protocols.loop_modeling.samplers
    pyrosetta.rosetta.protocols.loop_modeling.utilities
    pyrosetta.rosetta.protocols.loophash
    pyrosetta.rosetta.protocols.loops
    pyrosetta.rosetta.protocols.loops.filters
    pyrosetta.rosetta.protocols.loops.loop_closure
    pyrosetta.rosetta.protocols.loops.loop_closure.ccd
    pyrosetta.rosetta.protocols.loops.loop_closure.jacobi
    pyrosetta.rosetta.protocols.loops.loop_closure.kinematic_closure
    pyrosetta.rosetta.protocols.loops.loop_mover
    pyrosetta.rosetta.protocols.loops.loop_mover.perturb
    pyrosetta.rosetta.protocols.loops.loop_mover.refine
    pyrosetta.rosetta.protocols.loops.loops_definers
    pyrosetta.rosetta.protocols.magnesium
    pyrosetta.rosetta.protocols.mainchain_potential
    pyrosetta.rosetta.protocols.make_rot_lib
    pyrosetta.rosetta.protocols.match
    pyrosetta.rosetta.protocols.match.downstream
    pyrosetta.rosetta.protocols.match.output
    pyrosetta.rosetta.protocols.match.upstream
    pyrosetta.rosetta.protocols.matdes
    pyrosetta.rosetta.protocols.md
    pyrosetta.rosetta.protocols.mean_field
    pyrosetta.rosetta.protocols.medal
    pyrosetta.rosetta.protocols.membrane
    pyrosetta.rosetta.protocols.membrane.benchmark
    pyrosetta.rosetta.protocols.membrane.geometry
    pyrosetta.rosetta.protocols.membrane.scoring
    pyrosetta.rosetta.protocols.membrane.symmetry
    pyrosetta.rosetta.protocols.membrane.visualize
    pyrosetta.rosetta.protocols.membrane_benchmark
    pyrosetta.rosetta.protocols.metal_interface
    pyrosetta.rosetta.protocols.minimization_packing
    pyrosetta.rosetta.protocols.minimization_packing.symmetry
    pyrosetta.rosetta.protocols.monte_carlo
    pyrosetta.rosetta.protocols.motif_grafting
    pyrosetta.rosetta.protocols.motif_grafting.movers
    pyrosetta.rosetta.protocols.motifs
    pyrosetta.rosetta.protocols.moves
    pyrosetta.rosetta.protocols.mpi_refinement
    pyrosetta.rosetta.protocols.multistage_rosetta_scripts
    pyrosetta.rosetta.protocols.multistage_rosetta_scripts.cluster
    pyrosetta.rosetta.protocols.multistage_rosetta_scripts.cluster.metrics
    pyrosetta.rosetta.protocols.multistate_design
    pyrosetta.rosetta.protocols.ncbb
    pyrosetta.rosetta.protocols.ncbb.oop
    pyrosetta.rosetta.protocols.neighbor
    pyrosetta.rosetta.protocols.network
    pyrosetta.rosetta.protocols.nmr
    pyrosetta.rosetta.protocols.nmr.pcs
    pyrosetta.rosetta.protocols.nmr.pre
    pyrosetta.rosetta.protocols.nmr.rdc
    pyrosetta.rosetta.protocols.noesy_assign
    pyrosetta.rosetta.protocols.nonlocal
    pyrosetta.rosetta.protocols.normalmode
    pyrosetta.rosetta.protocols.optimize_weights
    pyrosetta.rosetta.protocols.pack_daemon
    pyrosetta.rosetta.protocols.pack_interface
    pyrosetta.rosetta.protocols.parser
    pyrosetta.rosetta.protocols.pb_potential
    pyrosetta.rosetta.protocols.pdbinfo_manipulations
    pyrosetta.rosetta.protocols.peptide_deriver
    pyrosetta.rosetta.protocols.pmut_scan
    pyrosetta.rosetta.protocols.pockets
    pyrosetta.rosetta.protocols.pose_creation
    pyrosetta.rosetta.protocols.pose_length_moves
    pyrosetta.rosetta.protocols.pose_metric_calculators
    pyrosetta.rosetta.protocols.pose_reporters
    pyrosetta.rosetta.protocols.pose_selectors
    pyrosetta.rosetta.protocols.pose_sewing
    pyrosetta.rosetta.protocols.pose_sewing.data_storage
    pyrosetta.rosetta.protocols.pose_sewing.filters
    pyrosetta.rosetta.protocols.pose_sewing.movers
    pyrosetta.rosetta.protocols.pose_sewing.simple_metrics
    pyrosetta.rosetta.protocols.protein_interface_design
    pyrosetta.rosetta.protocols.protein_interface_design.filters
    pyrosetta.rosetta.protocols.protein_interface_design.movers
    pyrosetta.rosetta.protocols.qsar
    pyrosetta.rosetta.protocols.qsar.scoring_grid
    pyrosetta.rosetta.protocols.quantum_annealing
    pyrosetta.rosetta.protocols.rbsegment_relax
    pyrosetta.rosetta.protocols.recces
    pyrosetta.rosetta.protocols.recces.options
    pyrosetta.rosetta.protocols.recces.params
    pyrosetta.rosetta.protocols.recces.sampler
    pyrosetta.rosetta.protocols.recces.sampler.rna
    pyrosetta.rosetta.protocols.recces.scratch
    pyrosetta.rosetta.protocols.recon_design
    pyrosetta.rosetta.protocols.relax
    pyrosetta.rosetta.protocols.relax.loop
    pyrosetta.rosetta.protocols.relax.membrane
    pyrosetta.rosetta.protocols.residue_optimization
    pyrosetta.rosetta.protocols.residue_selectors
    pyrosetta.rosetta.protocols.rigid
    pyrosetta.rosetta.protocols.rna
    pyrosetta.rosetta.protocols.rna.denovo
    pyrosetta.rosetta.protocols.rna.denovo.coarse
    pyrosetta.rosetta.protocols.rna.denovo.movers
    pyrosetta.rosetta.protocols.rna.denovo.output
    pyrosetta.rosetta.protocols.rna.movers
    pyrosetta.rosetta.protocols.rna.setup
    pyrosetta.rosetta.protocols.rosetta_scripts
    pyrosetta.rosetta.protocols.rotamer_recovery
    pyrosetta.rosetta.protocols.RotamerDump
    pyrosetta.rosetta.protocols.rpc
    pyrosetta.rosetta.protocols.sasa_scores
    pyrosetta.rosetta.protocols.score_filters
    pyrosetta.rosetta.protocols.scoring
    pyrosetta.rosetta.protocols.scoring.methods
    pyrosetta.rosetta.protocols.scoring.methods.pcs
    pyrosetta.rosetta.protocols.scoring.methods.pcs2
    pyrosetta.rosetta.protocols.scoring.methods.pcsTs1
    pyrosetta.rosetta.protocols.scoring.methods.pcsTs2
    pyrosetta.rosetta.protocols.scoring.methods.pcsTs3
    pyrosetta.rosetta.protocols.scoring.methods.pcsTs4
    pyrosetta.rosetta.protocols.scoring.methods.saxs
    pyrosetta.rosetta.protocols.seeded_abinitio
    pyrosetta.rosetta.protocols.sewing
    pyrosetta.rosetta.protocols.sewing.data_storage
    pyrosetta.rosetta.protocols.sewing.hashing
    pyrosetta.rosetta.protocols.sewing.movers
    pyrosetta.rosetta.protocols.sewing.requirements
    pyrosetta.rosetta.protocols.sewing.scoring
    pyrosetta.rosetta.protocols.sic_dock
    pyrosetta.rosetta.protocols.sic_dock.scores
    pyrosetta.rosetta.protocols.simple_ddg
    pyrosetta.rosetta.protocols.simple_filters
    pyrosetta.rosetta.protocols.simple_moves
    pyrosetta.rosetta.protocols.simple_moves.a3b_hbs
    pyrosetta.rosetta.protocols.simple_moves.asym_fold_and_dock
    pyrosetta.rosetta.protocols.simple_moves.bb_sampler
    pyrosetta.rosetta.protocols.simple_moves.bin_transitions
    pyrosetta.rosetta.protocols.simple_moves.chiral
    pyrosetta.rosetta.protocols.simple_moves.hbs
    pyrosetta.rosetta.protocols.simple_moves.oop
    pyrosetta.rosetta.protocols.simple_moves.rational_mc
    pyrosetta.rosetta.protocols.simple_moves.sidechain_moves
    pyrosetta.rosetta.protocols.simple_moves.triazolamer
    pyrosetta.rosetta.protocols.simple_pose_metric_calculators
    pyrosetta.rosetta.protocols.simple_task_operations
    pyrosetta.rosetta.protocols.sparta
    pyrosetta.rosetta.protocols.splice
    pyrosetta.rosetta.protocols.ss_prediction
    pyrosetta.rosetta.protocols.star
    pyrosetta.rosetta.protocols.stepwise
    pyrosetta.rosetta.protocols.stepwise.legacy
    pyrosetta.rosetta.protocols.stepwise.legacy.modeler
    pyrosetta.rosetta.protocols.stepwise.legacy.modeler.protein
    pyrosetta.rosetta.protocols.stepwise.legacy.modeler.rna
    pyrosetta.rosetta.protocols.stepwise.legacy.screener
    pyrosetta.rosetta.protocols.stepwise.modeler
    pyrosetta.rosetta.protocols.stepwise.modeler.align
    pyrosetta.rosetta.protocols.stepwise.modeler.movemap
    pyrosetta.rosetta.protocols.stepwise.modeler.options
    pyrosetta.rosetta.protocols.stepwise.modeler.packer
    pyrosetta.rosetta.protocols.stepwise.modeler.polar_hydrogens
    pyrosetta.rosetta.protocols.stepwise.modeler.precomputed
    pyrosetta.rosetta.protocols.stepwise.modeler.protein
    pyrosetta.rosetta.protocols.stepwise.modeler.protein.checker
    pyrosetta.rosetta.protocols.stepwise.modeler.protein.loop_close
    pyrosetta.rosetta.protocols.stepwise.modeler.rna
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.bulge
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.checker
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.o2prime
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.phosphate
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.rigid_body
    pyrosetta.rosetta.protocols.stepwise.modeler.rna.sugar
    pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters
    pyrosetta.rosetta.protocols.stepwise.monte_carlo
    pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover
    pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.options
    pyrosetta.rosetta.protocols.stepwise.monte_carlo.options
    pyrosetta.rosetta.protocols.stepwise.monte_carlo.rna
    pyrosetta.rosetta.protocols.stepwise.monte_carlo.submotif
    pyrosetta.rosetta.protocols.stepwise.options
    pyrosetta.rosetta.protocols.stepwise.sampler
    pyrosetta.rosetta.protocols.stepwise.sampler.copy_dofs
    pyrosetta.rosetta.protocols.stepwise.sampler.input_streams
    pyrosetta.rosetta.protocols.stepwise.sampler.jump
    pyrosetta.rosetta.protocols.stepwise.sampler.protein
    pyrosetta.rosetta.protocols.stepwise.sampler.rigid_body
    pyrosetta.rosetta.protocols.stepwise.sampler.rna
    pyrosetta.rosetta.protocols.stepwise.sampler.screener
    pyrosetta.rosetta.protocols.stepwise.screener
    pyrosetta.rosetta.protocols.stepwise.setup
    pyrosetta.rosetta.protocols.struct_fragment
    pyrosetta.rosetta.protocols.surface_docking
    pyrosetta.rosetta.protocols.switches
    pyrosetta.rosetta.protocols.symmetric_docking
    pyrosetta.rosetta.protocols.symmetric_docking.membrane
    pyrosetta.rosetta.protocols.symmetry
    pyrosetta.rosetta.protocols.task_operations
    pyrosetta.rosetta.protocols.tcr
    pyrosetta.rosetta.protocols.testing
    pyrosetta.rosetta.protocols.toolbox
    pyrosetta.rosetta.protocols.toolbox.match_enzdes_util
    pyrosetta.rosetta.protocols.toolbox.pose_manipulation
    pyrosetta.rosetta.protocols.toolbox.py_inheritance_test
    pyrosetta.rosetta.protocols.toolbox.rigid_body
    pyrosetta.rosetta.protocols.toolbox.rotamer_set_operations
    pyrosetta.rosetta.protocols.toolbox.sample_around
    pyrosetta.rosetta.protocols.topology_broker
    pyrosetta.rosetta.protocols.topology_broker.claims
    pyrosetta.rosetta.protocols.topology_broker.weights
    pyrosetta.rosetta.protocols.trajectory
    pyrosetta.rosetta.protocols.trRosetta
    pyrosetta.rosetta.protocols.trRosetta_protocols
    pyrosetta.rosetta.protocols.trRosetta_protocols.constraint_generators
    pyrosetta.rosetta.protocols.trRosetta_protocols.movers
    pyrosetta.rosetta.protocols.ub_e2c
    pyrosetta.rosetta.protocols.unfolded_state_energy_calculator
    pyrosetta.rosetta.protocols.vardist_solaccess
    pyrosetta.rosetta.protocols.viewer
    pyrosetta.rosetta.protocols.viewer.graphics_states_param
    pyrosetta.rosetta.protocols.vip
    pyrosetta.rosetta.protocols.wum
    pyrosetta.rosetta.RDGeom
    pyrosetta.rosetta.RDKit
    pyrosetta.rosetta.std
    pyrosetta.rosetta.std.chrono
    pyrosetta.rosetta.utility
    pyrosetta.rosetta.utility.CSI
    pyrosetta.rosetta.utility.excn
    pyrosetta.rosetta.utility.factory
    pyrosetta.rosetta.utility.file
    pyrosetta.rosetta.utility.graph
    pyrosetta.rosetta.utility.io
    pyrosetta.rosetta.utility.io.mpi_stream
    pyrosetta.rosetta.utility.json_spirit
    pyrosetta.rosetta.utility.keys
    pyrosetta.rosetta.utility.libsvm
    pyrosetta.rosetta.utility.options
    pyrosetta.rosetta.utility.py
    pyrosetta.rosetta.utility.signals
    pyrosetta.rosetta.utility.sql_database
    pyrosetta.rosetta.utility.tag
    pyrosetta.rosetta.utility.tools
    pyrosetta.rosetta.utility.type_traits
    pyrosetta.rosetta.utility.type_traits.has_insertion_operator_implementation
    pyrosetta.rosetta.utility.xsd_util
    pyrosetta.rosetta.utility_exit_detail
    pyrosetta.teaching
    pyrosetta.tests
    pyrosetta.tests.bindings
    pyrosetta.tests.bindings.core
    pyrosetta.tests.bindings.core.test_pose
    pyrosetta.tests.distributed
    pyrosetta.tests.distributed.cluster
    pyrosetta.tests.distributed.test_dask_worker
    pyrosetta.tests.numeric
    pyrosetta.tests.protocols
    pyrosetta.tests.protocols.indexed_structure_store
    pyrosetta.toolbox
    pyrosetta.toolbox.atom_pair_energy
    pyrosetta.toolbox.cleaning
    pyrosetta.toolbox.extract_coords_pose
    pyrosetta.toolbox.generate_resfile
    pyrosetta.toolbox.mutants
    pyrosetta.toolbox.numpy_utils
    pyrosetta.toolbox.py_jobdistributor
    pyrosetta.toolbox.rcsb
    pyrosetta.utility