operation¶
Bindings for core::pack::task::operation namespace
- class pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::AddBehaviorRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT, : pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT) pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT ¶
C++: core::pack::task::operation::AddBehaviorRLT::operator=(const class core::pack::task::operation::AddBehaviorRLT &) –> class core::pack::task::operation::AddBehaviorRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::AddBehaviorRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::AddBehaviorRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::AddBehaviorRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator) pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator ¶
C++: core::pack::task::operation::AddBehaviorRLTCreator::operator=(const class core::pack::task::operation::AddBehaviorRLTCreator &) –> class core::pack::task::operation::AddBehaviorRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::AddBehaviorRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator) str ¶
C++: core::pack::task::operation::AddBehaviorRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.AddBehaviorRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AddBehaviorRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.AllResFilter¶
Bases:
ResFilterComposition
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AllResFilter, : pyrosetta.rosetta.core.pack.task.operation.AllResFilter) pyrosetta.rosetta.core.pack.task.operation.AllResFilter ¶
C++: core::pack::task::operation::AllResFilter::operator=(const class core::pack::task::operation::AllResFilter &) –> class core::pack::task::operation::AllResFilter &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AllResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::AllResFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static define_composition_schema(xsd: utility::tag::XMLSchemaDefinition) utility::tag::XMLSchemaComplexTypeGenerator ¶
C++: core::pack::task::operation::ResFilterComposition::define_composition_schema(class utility::tag::XMLSchemaDefinition &) –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>
- static keyname() str ¶
C++: core::pack::task::operation::AllResFilter::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator ¶
C++: core::pack::task::operation::AllResFilterCreator::operator=(const class core::pack::task::operation::AllResFilterCreator &) –> class core::pack::task::operation::AllResFilterCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::AllResFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AllResFilterCreator) str ¶
C++: core::pack::task::operation::AllResFilterCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.AnyResFilter¶
Bases:
ResFilterComposition
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AnyResFilter, : pyrosetta.rosetta.core.pack.task.operation.AnyResFilter) pyrosetta.rosetta.core.pack.task.operation.AnyResFilter ¶
C++: core::pack::task::operation::AnyResFilter::operator=(const class core::pack::task::operation::AnyResFilter &) –> class core::pack::task::operation::AnyResFilter &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AnyResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::AnyResFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static define_composition_schema(xsd: utility::tag::XMLSchemaDefinition) utility::tag::XMLSchemaComplexTypeGenerator ¶
C++: core::pack::task::operation::ResFilterComposition::define_composition_schema(class utility::tag::XMLSchemaDefinition &) –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>
- static keyname() str ¶
C++: core::pack::task::operation::AnyResFilter::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator ¶
C++: core::pack::task::operation::AnyResFilterCreator::operator=(const class core::pack::task::operation::AnyResFilterCreator &) –> class core::pack::task::operation::AnyResFilterCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::AnyResFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AnyResFilterCreator) str ¶
C++: core::pack::task::operation::AnyResFilterCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet¶
Bases:
TaskOperation
Apply rotamerSetOperation to only the rotamerSet for the given residue
Tim Jacobs (2011)
- apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, : pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::operator=(const class core::pack::task::operation::AppendResidueRotamerSet &) –> class core::pack::task::operation::AppendResidueRotamerSet &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_resnum(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, resnum: int) None ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::set_resnum(unsigned long) –> void
- set_rotamer_set_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSet, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) None ¶
C++: core::pack::task::operation::AppendResidueRotamerSet::set_rotamer_set_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerSetOperation>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator, : pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator) pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator ¶
C++: core::pack::task::operation::AppendResidueRotamerSetCreator::operator=(const class core::pack::task::operation::AppendResidueRotamerSetCreator &) –> class core::pack::task::operation::AppendResidueRotamerSetCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendResidueRotamerSetCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator) str ¶
C++: core::pack::task::operation::AppendResidueRotamerSetCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.AppendResidueRotamerSetCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendResidueRotamerSetCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.AppendRotamer¶
Bases:
TaskOperation
when a PackerTask is created by the Factory, the RotamerOperation will be given to it
- apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::AppendRotamer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) pyrosetta.rosetta.core.pack.task.operation.AppendRotamer ¶
C++: core::pack::task::operation::AppendRotamer::operator=(const class core::pack::task::operation::AppendRotamer &) –> class core::pack::task::operation::AppendRotamer &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendRotamer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::AppendRotamer::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendRotamer::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_rotamer_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamer, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerOperation) None ¶
C++: core::pack::task::operation::AppendRotamer::set_rotamer_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerOperation>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator) pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator ¶
C++: core::pack::task::operation::AppendRotamerCreator::operator=(const class core::pack::task::operation::AppendRotamerCreator &) –> class core::pack::task::operation::AppendRotamerCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendRotamerCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator) str ¶
C++: core::pack::task::operation::AppendRotamerCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendRotamerCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet¶
Bases:
TaskOperation
when a PackerTask is created by the Factory, the RotamerSetOperation will be given to it
Barak Raveh (Dec 2008)
- apply(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::AppendRotamerSet::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet ¶
C++: core::pack::task::operation::AppendRotamerSet::operator=(const class core::pack::task::operation::AppendRotamerSet &) –> class core::pack::task::operation::AppendRotamerSet &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendRotamerSet::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::AppendRotamerSet::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendRotamerSet::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_rotamer_set_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSet, rotamer_operation: pyrosetta.rosetta.core.pack.rotamer_set.RotamerSetOperation) None ¶
C++: core::pack::task::operation::AppendRotamerSet::set_rotamer_set_operation(class std::shared_ptr<class core::pack::rotamer_set::RotamerSetOperation>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator, : pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator) pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator ¶
C++: core::pack::task::operation::AppendRotamerSetCreator::operator=(const class core::pack::task::operation::AppendRotamerSetCreator &) –> class core::pack::task::operation::AppendRotamerSetCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::AppendRotamerSetCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator) str ¶
C++: core::pack::task::operation::AppendRotamerSetCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.AppendRotamerSetCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::AppendRotamerSetCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ChainIs¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ChainIs, : pyrosetta.rosetta.core.pack.task.operation.ChainIs) pyrosetta.rosetta.core.pack.task.operation.ChainIs ¶
C++: core::pack::task::operation::ChainIs::operator=(const class core::pack::task::operation::ChainIs &) –> class core::pack::task::operation::ChainIs &
- chain(self: pyrosetta.rosetta.core.pack.task.operation.ChainIs) str ¶
C++: core::pack::task::operation::ChainIs::chain() const –> const char &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ChainIs) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ChainIs::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes(xsd: utility::tag::XMLSchemaDefinition) pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ChainIs::get_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ChainIs::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator, : pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator) pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator ¶
C++: core::pack::task::operation::ChainIsCreator::operator=(const class core::pack::task::operation::ChainIsCreator &) –> class core::pack::task::operation::ChainIsCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ChainIsCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsCreator) str ¶
C++: core::pack::task::operation::ChainIsCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ChainIsnt¶
Bases:
ChainIs
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsnt, : pyrosetta.rosetta.core.pack.task.operation.ChainIsnt) pyrosetta.rosetta.core.pack.task.operation.ChainIsnt ¶
C++: core::pack::task::operation::ChainIsnt::operator=(const class core::pack::task::operation::ChainIsnt &) –> class core::pack::task::operation::ChainIsnt &
- chain(self: pyrosetta.rosetta.core.pack.task.operation.ChainIs) str ¶
C++: core::pack::task::operation::ChainIs::chain() const –> const char &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsnt) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ChainIsnt::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes(xsd: utility::tag::XMLSchemaDefinition) pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ChainIs::get_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ChainIsnt::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator, : pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator ¶
C++: core::pack::task::operation::ChainIsntCreator::operator=(const class core::pack::task::operation::ChainIsntCreator &) –> class core::pack::task::operation::ChainIsntCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ChainIsntCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ChainIsntCreator) str ¶
C++: core::pack::task::operation::ChainIsntCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell¶
Bases:
TaskOperation
Create a shell of residues that can repack around a smaller group of residues being repacked or designed.
More specifically, this task operation disables repacking for (i.e. freezes) any position that isn’t part of the aforementioned group or its shell. The most common use-case is to define a set of positions that you’re interested in designing (i.e. with a resfile), and limit the rest of the protein to repacking (e.g. NATAA). Then you can apply the ClashBasedRepackShell to limit the repacking to only the positions that really interact with the design positions. This keeps the simulations efficient and prevents the final scores from being affected by random changes in packing far away from the region being designed.
This task operation is a very thin wrapper around ClashBasedShellSelector. You can access and configure the selector in question via the selector() method.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
apply operations to PackerTask
C++: core::pack::task::operation::ClashBasedRepackShell::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell, : pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell) pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell ¶
C++: core::pack::task::operation::ClashBasedRepackShell::operator=(const class core::pack::task::operation::ClashBasedRepackShell &) –> class core::pack::task::operation::ClashBasedRepackShell &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Return a shallow copy of this object.
C++: core::pack::task::operation::ClashBasedRepackShell::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return “ClashBasedRepackShell”.
C++: core::pack::task::operation::ClashBasedRepackShell::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Initialize from an XML tag.
C++: core::pack::task::operation::ClashBasedRepackShell::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
Define the expected XML options.
C++: core::pack::task::operation::ClashBasedRepackShell::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(*args, **kwargs)¶
Overloaded function.
selector(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell) -> core::pack::task::residue_selector::ClashBasedShellSelector
Get the ResidueSelector used to define the repack shell.
C++: core::pack::task::operation::ClashBasedRepackShell::selector() const –> class std::shared_ptr<class core::pack::task::residue_selector::ClashBasedShellSelector>
selector(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShell, : core::pack::task::residue_selector::ClashBasedShellSelector) -> None
Set the ResidueSelector used to define the repack shell.
C++: core::pack::task::operation::ClashBasedRepackShell::selector(class std::shared_ptr<class core::pack::task::residue_selector::ClashBasedShellSelector>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator, : pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator) pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator ¶
C++: core::pack::task::operation::ClashBasedRepackShellCreator::operator=(const class core::pack::task::operation::ClashBasedRepackShellCreator &) –> class core::pack::task::operation::ClashBasedRepackShellCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ClashBasedRepackShellCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator) str ¶
C++: core::pack::task::operation::ClashBasedRepackShellCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ClashBasedRepackShellCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ClashBasedRepackShellCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions¶
Bases:
TaskOperation
Combine a set of ResidueSelectors and ResidueLevelTaskOperations concisely, using boolean logic to join selectors concisely
- Basically, we want to be able to encode layer design as follows:
<RESIDUE_SELECTORS>
<Layer name=”surface” select_core=”false” select_boundary=”false” select_surface=”true” use_sidechain_neighbors=”true”/> <Layer name=”boundary” select_core=”false” select_boundary=”true” select_surface=”false” use_sidechain_neighbors=”true”/> <Layer name=”core” select_core=”true” select_boundary=”false” select_surface=”false” use_sidechain_neighbors=”true”/> <SecondaryStructure name=”helix” overlap=”0” minH=”3” include_terminal_loops=”false” use_dssp=”true” ss=”H” /> <SecondaryStructure name=”sheet” overlap=”0” minE=”3” include_terminal_loops=”false” use_dssp=”true” ss=”E” /> <SecondaryStructure name=”loop” overlap=”0” minH=”3” minE=”3” include_terminal_loops=”true” use_dssp=”true” ss=”L” />
</RESIDUE_SELECTORS> <TASKOPERATIONS>
- <DesignRestrictions name=”layer_design”>
<Action selector_logic=”surface AND ( helix OR sheet) ” aas=”DEHKNQRST”/> <Action selector_logic=”surface AND loop” aas=”DEGHKNPQRST”/> <Action selector_logic=”boundary AND helix” aas=”ADEIKLMNQRSTVWY”/> <Action selector_logic=”boundary AND sheet” aas=”DEFIKLNQRSTVWY”/> <Action selector_logic=”boundary AND loop” aas=”ADEFGIKLMNPQRSTVWY”/> <Action selector_logic=”core AND helix” aas=”AFILMVWY”/> <Action selector_logic=”core AND sheet” aas=”FILVWY”/> <Action selector_logic=”core AND loop” aas=”AFILMPVWY”/>
</DesignRestrictions>
</TASKOPERATIONS>
So that it then becomes easy to adapt it to change the logic; e.g. if residues 19, 21, and 23 should keep their native amino acid, and still be allowed to pack, then it will look like this
- <RESIDUE_SELECTORS>
… the surface, boundary, core, helix, sheet and loop selectors listed above … <ResidueIndexSelector name=”special_res” resnums=”19,21,23”/>
- <RESIDUE_LEVEL_TASK_OPERATIONS>
<RestrictToRepackingRLT name=”rtr”/>
<RESIDUE_LEVEL_TASK_OPERATIONS> <TASKOPERATIONS>
- <DesignRestrictions name=”custom_layer_design”>
<Action residue_selector=”special_res” residue_level_operations=”rtr”/> <Action selector_logic=”!special_res AND surface AND ( helix OR sheet) ” aas=”DEHKNQRST”/> <Action selector_logic=”!special_res AND surface AND loop” aas=”DEGHKNPQRST”/> <Action selector_logic=”!special_res AND boundary AND helix” aas=”ADEIKLMNQRSTVWY”/> <Action selector_logic=”!special_res AND boundary AND sheet” aas=”DEFIKLNQRSTVWY”/> <Action selector_logic=”!special_res AND boundary AND loop” aas=”ADEFGIKLMNPQRSTVWY”/> <Action selector_logic=”!special_res AND core AND helix” aas=”AFILMVWY”/> <Action selector_logic=”!special_res AND core AND sheet” aas=”FILVWY”/> <Action selector_logic=”!special_res AND core AND loop” aas=”AFILMPVWY”/>
</DesignRestrictions>
</TASKOPERATIONS>
Where the second “Action” above is saying “apply this to residues besides the special residues that are on surface loops”
- add_selector_rlto_pair(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, rlto: core::pack::task::operation::ResLvlTaskOperation) None ¶
C++: core::pack::task::operation::DesignRestrictions::add_selector_rlto_pair(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>, class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation>) –> void
- apply(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::DesignRestrictions::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions, : pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions) pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions ¶
C++: core::pack::task::operation::DesignRestrictions::operator=(const class core::pack::task::operation::DesignRestrictions &) –> class core::pack::task::operation::DesignRestrictions &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::DesignRestrictions::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file
C++: core::pack::task::operation::DesignRestrictions::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictions, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::DesignRestrictions::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator, : pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator) pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator ¶
C++: core::pack::task::operation::DesignRestrictionsCreator::operator=(const class core::pack::task::operation::DesignRestrictionsCreator &) –> class core::pack::task::operation::DesignRestrictionsCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::DesignRestrictionsCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator) str ¶
C++: core::pack::task::operation::DesignRestrictionsCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.DesignRestrictionsCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::DesignRestrictionsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative¶
Bases:
TaskOperation
DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below
- apply(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::DisallowIfNonnative::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative ¶
C++: core::pack::task::operation::DisallowIfNonnative::operator=(const class core::pack::task::operation::DisallowIfNonnative &) –> class core::pack::task::operation::DisallowIfNonnative &
- clear(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) None ¶
C++: core::pack::task::operation::DisallowIfNonnative::clear() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::DisallowIfNonnative::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- disallow_aas(*args, **kwargs)¶
Overloaded function.
disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, canonical_disallowed: pyrosetta.rosetta.utility.vector1_bool) -> None
C++: core::pack::task::operation::DisallowIfNonnative::disallow_aas(const class utility::vector1<bool, class std::allocator<bool> > &) –> void
disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, aa_string: str) -> None
C++: core::pack::task::operation::DisallowIfNonnative::disallow_aas(const std::string &) –> void
- static keyname() str ¶
C++: core::pack::task::operation::DisallowIfNonnative::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::DisallowIfNonnative::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::DisallowIfNonnative::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- restrict_to_residue(*args, **kwargs)¶
Overloaded function.
restrict_to_residue(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, resid: int) -> None
C++: core::pack::task::operation::DisallowIfNonnative::restrict_to_residue(const unsigned long &) –> void
restrict_to_residue(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnative, residues: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None
C++: core::pack::task::operation::DisallowIfNonnative::restrict_to_residue(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void
- class pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator, : pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator) pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator ¶
C++: core::pack::task::operation::DisallowIfNonnativeCreator::operator=(const class core::pack::task::operation::DisallowIfNonnativeCreator &) –> class core::pack::task::operation::DisallowIfNonnativeCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::DisallowIfNonnativeCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator) str ¶
C++: core::pack::task::operation::DisallowIfNonnativeCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::DisallowIfNonnativeCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT, rlt: pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT, : pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT) pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::operator=(const class core::pack::task::operation::DisallowIfNonnativeRLT &) –> class core::pack::task::operation::DisallowIfNonnativeRLT &
- clear(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT) None ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::clear() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- disallow_aas(*args, **kwargs)¶
Overloaded function.
disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT, canonical_disallowed: pyrosetta.rosetta.utility.vector1_bool) -> None
C++: core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas(const class utility::vector1<bool, class std::allocator<bool> > &) –> void
disallow_aas(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT, aa_string: str) -> None
C++: core::pack::task::operation::DisallowIfNonnativeRLT::disallow_aas(const std::string &) –> void
- static keyname() str ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator) pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLTCreator::operator=(const class core::pack::task::operation::DisallowIfNonnativeRLTCreator &) –> class core::pack::task::operation::DisallowIfNonnativeRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator) str ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.DisallowIfNonnativeRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::DisallowIfNonnativeRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer¶
Bases:
TaskOperation
Task Operation for turning on the multi-cool annealer
- apply(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, : pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealer::operator=(const class core::pack::task::operation::EnableMultiCoolAnnealer &) –> class core::pack::task::operation::EnableMultiCoolAnnealer &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file
C++: core::pack::task::operation::EnableMultiCoolAnnealer::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealer, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::EnableMultiCoolAnnealer::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator, : pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealerCreator::operator=(const class core::pack::task::operation::EnableMultiCoolAnnealerCreator &) –> class core::pack::task::operation::EnableMultiCoolAnnealerCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealerCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator) str ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealerCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.EnableMultiCoolAnnealerCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::EnableMultiCoolAnnealerCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer¶
Bases:
TaskOperation
Task Operation for turning on the multi-cool annealer
- apply(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::EnableSmartAnnealer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, : pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer ¶
C++: core::pack::task::operation::EnableSmartAnnealer::operator=(const class core::pack::task::operation::EnableSmartAnnealer &) –> class core::pack::task::operation::EnableSmartAnnealer &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::EnableSmartAnnealer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file
C++: core::pack::task::operation::EnableSmartAnnealer::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::EnableSmartAnnealer::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
Describe the format of XML file used to initialize this TaskOperation
C++: core::pack::task::operation::EnableSmartAnnealer::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_smart_annealer_cutoff(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, smart_annealer_cutoff: float) None ¶
C++: core::pack::task::operation::EnableSmartAnnealer::set_smart_annealer_cutoff(const double) –> void
- set_smart_annealer_disable_during_quench(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, smart_annealer_disable_during_quench: bool) None ¶
C++: core::pack::task::operation::EnableSmartAnnealer::set_smart_annealer_disable_during_quench(const bool) –> void
- set_smart_annealer_model(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, smart_annealer_model: str) None ¶
C++: core::pack::task::operation::EnableSmartAnnealer::set_smart_annealer_model(const std::string &) –> void
- set_smart_annealer_pick_again(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer, smart_annealer_pick_again: bool) None ¶
C++: core::pack::task::operation::EnableSmartAnnealer::set_smart_annealer_pick_again(const bool) –> void
- smart_annealer_cutoff(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) float ¶
C++: core::pack::task::operation::EnableSmartAnnealer::smart_annealer_cutoff() const –> double
- smart_annealer_disable_during_quench(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) bool ¶
C++: core::pack::task::operation::EnableSmartAnnealer::smart_annealer_disable_during_quench() const –> bool
- smart_annealer_model(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) str ¶
C++: core::pack::task::operation::EnableSmartAnnealer::smart_annealer_model() const –> const std::string &
- smart_annealer_pick_again(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealer) bool ¶
C++: core::pack::task::operation::EnableSmartAnnealer::smart_annealer_pick_again() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator, : pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator ¶
C++: core::pack::task::operation::EnableSmartAnnealerCreator::operator=(const class core::pack::task::operation::EnableSmartAnnealerCreator &) –> class core::pack::task::operation::EnableSmartAnnealerCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::EnableSmartAnnealerCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator) str ¶
C++: core::pack::task::operation::EnableSmartAnnealerCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.EnableSmartAnnealerCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::EnableSmartAnnealerCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff(correponding to flag "-extrachi_cutoff <float>")¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ExtraChiCutoff::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff) pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff ¶
C++: core::pack::task::operation::ExtraChiCutoff::operator=(const class core::pack::task::operation::ExtraChiCutoff &) –> class core::pack::task::operation::ExtraChiCutoff &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraChiCutoff::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::ExtraChiCutoff::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoff, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ExtraChiCutoff::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator, : pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator) pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator ¶
C++: core::pack::task::operation::ExtraChiCutoffCreator::operator=(const class core::pack::task::operation::ExtraChiCutoffCreator &) –> class core::pack::task::operation::ExtraChiCutoffCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraChiCutoffCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator) str ¶
C++: core::pack::task::operation::ExtraChiCutoffCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraChiCutoffCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::ExtraChiCutoffRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT, : pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT) pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT ¶
C++: core::pack::task::operation::ExtraChiCutoffRLT::operator=(const class core::pack::task::operation::ExtraChiCutoffRLT &) –> class core::pack::task::operation::ExtraChiCutoffRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::ExtraChiCutoffRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::ExtraChiCutoffRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ExtraChiCutoffRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator ¶
C++: core::pack::task::operation::ExtraChiCutoffRLTCreator::operator=(const class core::pack::task::operation::ExtraChiCutoffRLTCreator &) –> class core::pack::task::operation::ExtraChiCutoffRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::ExtraChiCutoffRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator) str ¶
C++: core::pack::task::operation::ExtraChiCutoffRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ExtraChiCutoffRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraChiCutoffRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData ¶
C++: core::pack::task::operation::ExtraRotamerSamplingData::operator=(const struct core::pack::task::operation::ExtraRotamerSamplingData &) –> struct core::pack::task::operation::ExtraRotamerSamplingData &
- property ex1_¶
- property ex1_sample_level_¶
- property ex1aro_¶
- property ex1aro_exposed_¶
- property ex1aro_exposed_sample_level_¶
- property ex1aro_sample_level_¶
- property ex2_¶
- property ex2_sample_level_¶
- property ex2aro_¶
- property ex2aro_exposed_¶
- property ex2aro_exposed_sample_level_¶
- property ex2aro_sample_level_¶
- property ex3_¶
- property ex3_sample_level_¶
- property ex4_¶
- property ex4_sample_level_¶
- property exdna_sample_level_¶
- property extrachi_cutoff_¶
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers¶
Bases:
TaskOperation
ExtraRotamer for a residue. You know, -ex1, -ex2, all that.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ExtraRotamers::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers ¶
C++: core::pack::task::operation::ExtraRotamers::operator=(const class core::pack::task::operation::ExtraRotamers &) –> class core::pack::task::operation::ExtraRotamers &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraRotamers::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::ExtraRotamers::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamers, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ExtraRotamers::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator ¶
C++: core::pack::task::operation::ExtraRotamersCreator::operator=(const class core::pack::task::operation::ExtraRotamersCreator &) –> class core::pack::task::operation::ExtraRotamersCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraRotamersCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator) str ¶
C++: core::pack::task::operation::ExtraRotamersCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraRotamersCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric¶
Bases:
TaskOperation
control the extra chi rotamers for all residues
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::operator=(const class core::pack::task::operation::ExtraRotamersGeneric &) –> class core::pack::task::operation::ExtraRotamersGeneric &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- ex1(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1(bool) –> void
- ex1_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex1aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro(bool) –> void
- ex1aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed(bool) –> void
- ex1aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex1aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex1aro_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2(bool) –> void
- ex2_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro(bool) –> void
- ex2aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed(bool) –> void
- ex2aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex2aro_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex3(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex3(bool) –> void
- ex3_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex3_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex4(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex4(bool) –> void
- ex4_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::ex4_sample_level(enum core::pack::task::ExtraRotSample) –> void
- exdna_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::exdna_sample_level(enum core::pack::task::ExtraRotSample) –> void
- extrachi_cutoff(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, value: int) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::extrachi_cutoff(unsigned long) –> void
- static keyname() str ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- sampling_data(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGeneric) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData ¶
C++: core::pack::task::operation::ExtraRotamersGeneric::sampling_data() const –> const struct core::pack::task::operation::ExtraRotamerSamplingData &
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator ¶
C++: core::pack::task::operation::ExtraRotamersGenericCreator::operator=(const class core::pack::task::operation::ExtraRotamersGenericCreator &) –> class core::pack::task::operation::ExtraRotamersGenericCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ExtraRotamersGenericCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator) str ¶
C++: core::pack::task::operation::ExtraRotamersGenericCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::operator=(const class core::pack::task::operation::ExtraRotamersGenericRLT &) –> class core::pack::task::operation::ExtraRotamersGenericRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- ex1(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1(bool) –> void
- ex1_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex1aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1aro(bool) –> void
- ex1aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1aro_exposed(bool) –> void
- ex1aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex1aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex1aro_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2(bool) –> void
- ex2_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2aro(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2aro(bool) –> void
- ex2aro_exposed(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2aro_exposed(bool) –> void
- ex2aro_exposed_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2aro_exposed_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex2aro_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex2aro_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex3(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex3(bool) –> void
- ex3_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex3_sample_level(enum core::pack::task::ExtraRotSample) –> void
- ex4(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: bool) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex4(bool) –> void
- ex4_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::ex4_sample_level(enum core::pack::task::ExtraRotSample) –> void
- exdna_sample_level(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::exdna_sample_level(enum core::pack::task::ExtraRotSample) –> void
- extrachi_cutoff(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, value: int) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::extrachi_cutoff(unsigned long) –> void
- static keyname() str ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- sampling_data(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLT) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLT::sampling_data() const –> const struct core::pack::task::operation::ExtraRotamerSamplingData &
- class pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLTCreator::operator=(const class core::pack::task::operation::ExtraRotamersGenericRLTCreator &) –> class core::pack::task::operation::ExtraRotamersGenericRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator) str ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamersGenericRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ExtraRotamersGenericRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation¶
Bases:
TaskOperation
fills the AUTO behavior for all residues in Task. Useful if a protocol expects AUTO-style resfile, but no resfile present.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::FillAUTOTaskOperation::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, : pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation ¶
C++: core::pack::task::operation::FillAUTOTaskOperation::operator=(const class core::pack::task::operation::FillAUTOTaskOperation &) –> class core::pack::task::operation::FillAUTOTaskOperation &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::FillAUTOTaskOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file
C++: core::pack::task::operation::FillAUTOTaskOperation::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperation, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::FillAUTOTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator ¶
C++: core::pack::task::operation::FillAUTOTaskOperationCreator::operator=(const class core::pack::task::operation::FillAUTOTaskOperationCreator &) –> class core::pack::task::operation::FillAUTOTaskOperationCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::FillAUTOTaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator) str ¶
C++: core::pack::task::operation::FillAUTOTaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.FillAUTOTaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::FillAUTOTaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::IncludeCurrent::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent, : pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent) pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent ¶
C++: core::pack::task::operation::IncludeCurrent::operator=(const class core::pack::task::operation::IncludeCurrent &) –> class core::pack::task::operation::IncludeCurrent &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrent) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::IncludeCurrent::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::IncludeCurrent::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator, : pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator) pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator ¶
C++: core::pack::task::operation::IncludeCurrentCreator::operator=(const class core::pack::task::operation::IncludeCurrentCreator &) –> class core::pack::task::operation::IncludeCurrentCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::IncludeCurrentCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator) str ¶
C++: core::pack::task::operation::IncludeCurrentCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::IncludeCurrentCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::IncludeCurrentRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT, : pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT) pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT ¶
C++: core::pack::task::operation::IncludeCurrentRLT::operator=(const class core::pack::task::operation::IncludeCurrentRLT &) –> class core::pack::task::operation::IncludeCurrentRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::IncludeCurrentRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::IncludeCurrentRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.utility.tag.Tag) None ¶
parser xml-like tags to set class data/parameters
C++: core::pack::task::operation::ResLvlTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator) pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator ¶
C++: core::pack::task::operation::IncludeCurrentRLTCreator::operator=(const class core::pack::task::operation::IncludeCurrentRLTCreator &) –> class core::pack::task::operation::IncludeCurrentRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::IncludeCurrentRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator) str ¶
C++: core::pack::task::operation::IncludeCurrentRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.IncludeCurrentRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::IncludeCurrentRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandline::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline, : pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline) pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandline::operator=(const class core::pack::task::operation::InitializeExtraRotsFromCommandline &) –> class core::pack::task::operation::InitializeExtraRotsFromCommandline &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandline) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandline::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandline::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator, : pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator) pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator::operator=(const class core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator &) –> class core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator) str ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.InitializeExtraRotsFromCommandlineCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::InitializeExtraRotsFromCommandlineCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::InitializeFromCommandline::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline, : pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline) pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline ¶
C++: core::pack::task::operation::InitializeFromCommandline::operator=(const class core::pack::task::operation::InitializeFromCommandline &) –> class core::pack::task::operation::InitializeFromCommandline &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeFromCommandline::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::InitializeFromCommandline::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandline, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::InitializeFromCommandline::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator, : pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator) pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator ¶
C++: core::pack::task::operation::InitializeFromCommandlineCreator::operator=(const class core::pack::task::operation::InitializeFromCommandlineCreator &) –> class core::pack::task::operation::InitializeFromCommandlineCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeFromCommandlineCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator) str ¶
C++: core::pack::task::operation::InitializeFromCommandlineCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromCommandlineCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::InitializeFromCommandlineCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection¶
Bases:
TaskOperation
retrieves an OptionCollection from the DataMap.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::operator=(const class core::pack::task::operation::InitializeFromOptionCollection &) –> class core::pack::task::operation::InitializeFromOptionCollection &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::keyname() –> std::string
- options(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, options: pyrosetta.rosetta.utility.options.OptionCollection) None ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::options(class std::shared_ptr<const class utility::options::OptionCollection>) –> void
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollection, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::InitializeFromOptionCollection::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator, : pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator) pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator ¶
C++: core::pack::task::operation::InitializeFromOptionCollectionCreator::operator=(const class core::pack::task::operation::InitializeFromOptionCollectionCreator &) –> class core::pack::task::operation::InitializeFromOptionCollectionCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::InitializeFromOptionCollectionCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator) str ¶
C++: core::pack::task::operation::InitializeFromOptionCollectionCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.InitializeFromOptionCollectionCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::InitializeFromOptionCollectionCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry¶
Bases:
TaskOperation
Task Operation for turning on the multi-cool annealer
- apply(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry, : pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry) pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::operator=(const class core::pack::task::operation::KeepSequenceSymmetry &) –> class core::pack::task::operation::KeepSequenceSymmetry &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file
C++: core::pack::task::operation::KeepSequenceSymmetry::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::KeepSequenceSymmetry::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- prefix_name(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry) str ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::prefix_name() const –> std::string
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
Describe the format of XML file used to initialize this TaskOperation
C++: core::pack::task::operation::KeepSequenceSymmetry::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_prefix_name(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry, setting: str) None ¶
Sets the name used for determining sequence symmetric selectors.
C++: core::pack::task::operation::KeepSequenceSymmetry::set_prefix_name(const std::string &) –> void
- set_setting(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry, setting: bool) None ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::set_setting(const bool) –> void
- setting(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetry) bool ¶
C++: core::pack::task::operation::KeepSequenceSymmetry::setting() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator, : pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator) pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator ¶
C++: core::pack::task::operation::KeepSequenceSymmetryCreator::operator=(const class core::pack::task::operation::KeepSequenceSymmetryCreator &) –> class core::pack::task::operation::KeepSequenceSymmetryCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::KeepSequenceSymmetryCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator) str ¶
C++: core::pack::task::operation::KeepSequenceSymmetryCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.KeepSequenceSymmetryCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::KeepSequenceSymmetryCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides¶
Bases:
TaskOperation
prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date
- apply(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
apply operations to PackerTask
C++: core::pack::task::operation::NoRepackDisulfides::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides, : pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides ¶
C++: core::pack::task::operation::NoRepackDisulfides::operator=(const class core::pack::task::operation::NoRepackDisulfides &) –> class core::pack::task::operation::NoRepackDisulfides &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfides) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
clone this object
C++: core::pack::task::operation::NoRepackDisulfides::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::NoRepackDisulfides::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator, : pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator) pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator ¶
C++: core::pack::task::operation::NoRepackDisulfidesCreator::operator=(const class core::pack::task::operation::NoRepackDisulfidesCreator &) –> class core::pack::task::operation::NoRepackDisulfidesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::NoRepackDisulfidesCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator) str ¶
C++: core::pack::task::operation::NoRepackDisulfidesCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.NoRepackDisulfidesCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::NoRepackDisulfidesCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.NoResFilter¶
Bases:
ResFilterComposition
- assign(self: pyrosetta.rosetta.core.pack.task.operation.NoResFilter, : pyrosetta.rosetta.core.pack.task.operation.NoResFilter) pyrosetta.rosetta.core.pack.task.operation.NoResFilter ¶
C++: core::pack::task::operation::NoResFilter::operator=(const class core::pack::task::operation::NoResFilter &) –> class core::pack::task::operation::NoResFilter &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.NoResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::NoResFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static define_composition_schema(xsd: utility::tag::XMLSchemaDefinition) utility::tag::XMLSchemaComplexTypeGenerator ¶
C++: core::pack::task::operation::ResFilterComposition::define_composition_schema(class utility::tag::XMLSchemaDefinition &) –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>
- static keyname() str ¶
C++: core::pack::task::operation::NoResFilter::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator ¶
C++: core::pack::task::operation::NoResFilterCreator::operator=(const class core::pack::task::operation::NoResFilterCreator &) –> class core::pack::task::operation::NoResFilterCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::NoResFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.NoResFilterCreator) str ¶
C++: core::pack::task::operation::NoResFilterCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::OperateOnCertainResidues::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues) pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues ¶
C++: core::pack::task::operation::OperateOnCertainResidues::operator=(const class core::pack::task::operation::OperateOnCertainResidues &) –> class core::pack::task::operation::OperateOnCertainResidues &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OperateOnCertainResidues::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- filter(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : core::pack::task::operation::ResFilter) None ¶
sets an optional filter that is applied to each individual residue
C++: core::pack::task::operation::OperateOnCertainResidues::filter(class std::shared_ptr<class core::pack::task::operation::ResFilter>) –> void
- static keyname() str ¶
C++: core::pack::task::operation::OperateOnCertainResidues::keyname() –> std::string
- op(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : core::pack::task::operation::ResLvlTaskOperation) None ¶
sets the ResLvlTaskOperation that will be applied to residues
C++: core::pack::task::operation::OperateOnCertainResidues::op(class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation>) –> void
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter
C++: core::pack::task::operation::OperateOnCertainResidues::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OperateOnCertainResidues::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- residue_indices(*args, **kwargs)¶
Overloaded function.
residue_indices(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues, : pyrosetta.rosetta.utility.vector1_unsigned_long) -> None
supports direct limitation of residues to be affected, without the need for a filter
C++: core::pack::task::operation::OperateOnCertainResidues::residue_indices(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void
residue_indices(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResidues) -> pyrosetta.rosetta.utility.vector1_unsigned_long
C++: core::pack::task::operation::OperateOnCertainResidues::residue_indices() –> class utility::vector1<unsigned long, class std::allocator<unsigned long> > &
- class pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator, : pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator) pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator ¶
C++: core::pack::task::operation::OperateOnCertainResiduesCreator::operator=(const class core::pack::task::operation::OperateOnCertainResiduesCreator &) –> class core::pack::task::operation::OperateOnCertainResiduesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OperateOnCertainResiduesCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator) str ¶
C++: core::pack::task::operation::OperateOnCertainResiduesCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnCertainResiduesCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OperateOnCertainResiduesCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset¶
Bases:
TaskOperation
Class, much like the OperateOnCertainResidues task operation, to apply a particular residue-level task operation on the residues identified by a ResidueSelector (Or a pre-selected subset).
- append_op(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::pack::task::operation::ResLvlTaskOperation) None ¶
- Add a ResLvlTaskOperation to the list of those that will be applied to the selected
residues
C++: core::pack::task::operation::OperateOnResidueSubset::append_op(class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation>) –> void
- apply(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::OperateOnResidueSubset::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset ¶
C++: core::pack::task::operation::OperateOnResidueSubset::operator=(const class core::pack::task::operation::OperateOnResidueSubset &) –> class core::pack::task::operation::OperateOnResidueSubset &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OperateOnResidueSubset::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- flip_subset(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, flip: bool) None ¶
Flip the subset on apply. False becomes True, True becomes False. Easier to interact with certain RLTOP.
C++: core::pack::task::operation::OperateOnResidueSubset::flip_subset(bool) –> void
- static keyname() str ¶
C++: core::pack::task::operation::OperateOnResidueSubset::keyname() –> std::string
- op(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : core::pack::task::operation::ResLvlTaskOperation) None ¶
sets the ResLvlTaskOperation that will be applied to residues
C++: core::pack::task::operation::OperateOnResidueSubset::op(class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation>) –> void
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to construct the ResLvlTaskOperation and the ResFilter
C++: core::pack::task::operation::OperateOnResidueSubset::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OperateOnResidueSubset::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, : pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
sets the ResidueSelector that will be used to determine which residues to apply the RLTOP to
C++: core::pack::task::operation::OperateOnResidueSubset::selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- subset(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubset, subset_residues: pyrosetta.rosetta.utility.vector1_bool) None ¶
sets a specific subset that will be operated on instead of a selector itself.
C++: core::pack::task::operation::OperateOnResidueSubset::subset(const class utility::vector1<bool, class std::allocator<bool> > &) –> void
- class pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator, : pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator) pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator ¶
C++: core::pack::task::operation::OperateOnResidueSubsetCreator::operator=(const class core::pack::task::operation::OperateOnResidueSubsetCreator &) –> class core::pack::task::operation::OperateOnResidueSubsetCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OperateOnResidueSubsetCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator) str ¶
C++: core::pack::task::operation::OperateOnResidueSubsetCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.OperateOnResidueSubsetCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OperateOnResidueSubsetCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.OptCysHG¶
Bases:
TaskOperation
run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides()
- apply(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
apply operations to PackerTask
C++: core::pack::task::operation::OptCysHG::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG, : pyrosetta.rosetta.core.pack.task.operation.OptCysHG) pyrosetta.rosetta.core.pack.task.operation.OptCysHG ¶
C++: core::pack::task::operation::OptCysHG::operator=(const class core::pack::task::operation::OptCysHG &) –> class core::pack::task::operation::OptCysHG &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHG) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
clone this object
C++: core::pack::task::operation::OptCysHG::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::OptCysHG::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator, : pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator) pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator ¶
C++: core::pack::task::operation::OptCysHGCreator::operator=(const class core::pack::task::operation::OptCysHGCreator &) –> class core::pack::task::operation::OptCysHGCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OptCysHGCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator) str ¶
C++: core::pack::task::operation::OptCysHGCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.OptCysHGCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OptCysHGCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.OptH¶
Bases:
TaskOperation
run optH; disallowed positions may be set to prevent optimization for those residues
- apply(self: pyrosetta.rosetta.core.pack.task.operation.OptH, : pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
apply operations to PackerTask
C++: core::pack::task::operation::OptH::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OptH, : pyrosetta.rosetta.core.pack.task.operation.OptH) pyrosetta.rosetta.core.pack.task.operation.OptH ¶
C++: core::pack::task::operation::OptH::operator=(const class core::pack::task::operation::OptH &) –> class core::pack::task::operation::OptH &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.OptH) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
clone this object
C++: core::pack::task::operation::OptH::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- disallow_resid(self: pyrosetta.rosetta.core.pack.task.operation.OptH, resid: int) None ¶
prevent a position from being optimized
C++: core::pack::task::operation::OptH::disallow_resid(const unsigned long) –> void
- flip_HNQ(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) None ¶
allow sidechain flips of HNQ? (default false)
C++: core::pack::task::operation::OptH::flip_HNQ(const bool) –> void
- include_current(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) None ¶
include current sidechain rotamers? (default true)
C++: core::pack::task::operation::OptH::include_current(const bool) –> void
- init_from_comand_line(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) None ¶
init flags from command line? (default true)
C++: core::pack::task::operation::OptH::init_from_comand_line(const bool) –> void
- static keyname() str ¶
C++: core::pack::task::operation::OptH::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OptH::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- use_multicool_annealer(self: pyrosetta.rosetta.core.pack.task.operation.OptH, flag: bool) None ¶
use multicool annealer? (default false)
C++: core::pack::task::operation::OptH::use_multicool_annealer(const bool) –> void
- class pyrosetta.rosetta.core.pack.task.operation.OptHCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.OptHCreator, : pyrosetta.rosetta.core.pack.task.operation.OptHCreator) pyrosetta.rosetta.core.pack.task.operation.OptHCreator ¶
C++: core::pack::task::operation::OptHCreator::operator=(const class core::pack::task::operation::OptHCreator &) –> class core::pack::task::operation::OptHCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.OptHCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::OptHCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.OptHCreator) str ¶
C++: core::pack::task::operation::OptHCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.OptHCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::OptHCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::PreserveCBeta::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta, : pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta) pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta ¶
C++: core::pack::task::operation::PreserveCBeta::operator=(const class core::pack::task::operation::PreserveCBeta &) –> class core::pack::task::operation::PreserveCBeta &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBeta) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::PreserveCBeta::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::PreserveCBeta::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator, : pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator) pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator ¶
C++: core::pack::task::operation::PreserveCBetaCreator::operator=(const class core::pack::task::operation::PreserveCBetaCreator &) –> class core::pack::task::operation::PreserveCBetaCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::PreserveCBetaCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator) str ¶
C++: core::pack::task::operation::PreserveCBetaCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::PreserveCBetaCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::PreserveCBetaRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT, : pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT) pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT ¶
C++: core::pack::task::operation::PreserveCBetaRLT::operator=(const class core::pack::task::operation::PreserveCBetaRLT &) –> class core::pack::task::operation::PreserveCBetaRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::PreserveCBetaRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::PreserveCBetaRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.utility.tag.Tag) None ¶
parser xml-like tags to set class data/parameters
C++: core::pack::task::operation::ResLvlTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator) pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator ¶
C++: core::pack::task::operation::PreserveCBetaRLTCreator::operator=(const class core::pack::task::operation::PreserveCBetaRLTCreator &) –> class core::pack::task::operation::PreserveCBetaRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::PreserveCBetaRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator) str ¶
C++: core::pack::task::operation::PreserveCBetaRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.PreserveCBetaRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::PreserveCBetaRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.PreventRepacking¶
Bases:
TaskOperation
PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you’d have a do-nothing task.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::PreventRepacking::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) pyrosetta.rosetta.core.pack.task.operation.PreventRepacking ¶
C++: core::pack::task::operation::PreventRepacking::operator=(const class core::pack::task::operation::PreventRepacking &) –> class core::pack::task::operation::PreventRepacking &
- clear(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) None ¶
C++: core::pack::task::operation::PreventRepacking::clear() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::PreventRepacking::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- include_residue(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, resid: int) None ¶
C++: core::pack::task::operation::PreventRepacking::include_residue(unsigned long) –> void
- static keyname() str ¶
C++: core::pack::task::operation::PreventRepacking::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepacking, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::PreventRepacking::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator, : pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator ¶
C++: core::pack::task::operation::PreventRepackingCreator::operator=(const class core::pack::task::operation::PreventRepackingCreator &) –> class core::pack::task::operation::PreventRepackingCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::PreventRepackingCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator) str ¶
C++: core::pack::task::operation::PreventRepackingCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::PreventRepackingCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::PreventRepackingRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT, : pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT) pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT ¶
C++: core::pack::task::operation::PreventRepackingRLT::operator=(const class core::pack::task::operation::PreventRepackingRLT &) –> class core::pack::task::operation::PreventRepackingRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::PreventRepackingRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::PreventRepackingRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.utility.tag.Tag) None ¶
parser xml-like tags to set class data/parameters
C++: core::pack::task::operation::ResLvlTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator) pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator ¶
C++: core::pack::task::operation::PreventRepackingRLTCreator::operator=(const class core::pack::task::operation::PreventRepackingRLTCreator &) –> class core::pack::task::operation::PreventRepackingRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::PreventRepackingRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator) str ¶
C++: core::pack::task::operation::PreventRepackingRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.PreventRepackingRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::PreventRepackingRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties¶
Bases:
TaskOperation
Restrict the palette of ResidueTypes to those with the given properties.
Labonte <JWLabonte.edu>
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ProhibitResidueProperties::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties, : pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties) pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties ¶
C++: core::pack::task::operation::ProhibitResidueProperties::operator=(const class core::pack::task::operation::ProhibitResidueProperties &) –> class core::pack::task::operation::ProhibitResidueProperties &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ProhibitResidueProperties::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::ProhibitResidueProperties::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties, tag: pyrosetta.rosetta.utility.tag.Tag, map: pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ProhibitResidueProperties::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- properties(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties) pyrosetta.rosetta.utility.vector1_core_chemical_ResidueProperty ¶
C++: core::pack::task::operation::ProhibitResidueProperties::properties() const –> const class utility::vector1<enum core::chemical::ResidueProperty, class std::allocator<enum core::chemical::ResidueProperty> > &
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ProhibitResidueProperties::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
C++: core::pack::task::operation::ProhibitResidueProperties::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_properties(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties, properties: pyrosetta.rosetta.utility.vector1_core_chemical_ResidueProperty) None ¶
C++: core::pack::task::operation::ProhibitResidueProperties::set_properties(const class utility::vector1<enum core::chemical::ResidueProperty, class std::allocator<enum core::chemical::ResidueProperty> > &) –> void
- set_selector(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResidueProperties, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
C++: core::pack::task::operation::ProhibitResidueProperties::set_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ProhibitResidueProperties::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.ProhibitResiduePropertiesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitResiduePropertiesCreator, : pyrosetta.rosetta.core.pack.task.operation.ProhibitResiduePropertiesCreator) pyrosetta.rosetta.core.pack.task.operation.ProhibitResiduePropertiesCreator ¶
C++: core::pack::task::operation::ProhibitResiduePropertiesCreator::operator=(const class core::pack::task::operation::ProhibitResiduePropertiesCreator &) –> class core::pack::task::operation::ProhibitResiduePropertiesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Instantiate a new TaskOperation
C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) str ¶
C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes¶
Bases:
TaskOperation
Prohibit the base ResidueTypes provided by name from the palette of ResidueTypes.
Labonte <JWLabonte.edu>
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes, : pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::operator=(const class core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes &) –> class core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes &
- base_types(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes) pyrosetta.rosetta.utility.vector1_std_string ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::base_types() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes, tag: pyrosetta.rosetta.utility.tag.Tag, map: pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_base_types(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes, base_types: pyrosetta.rosetta.utility.vector1_std_string) None ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::set_base_types(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void
- set_selector(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypes, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::set_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypesCreator, : pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypesCreator) pyrosetta.rosetta.core.pack.task.operation.ProhibitSpecifiedBaseResidueTypesCreator ¶
C++: core::pack::task::operation::ProhibitSpecifiedBaseResidueTypesCreator::operator=(const class core::pack::task::operation::ProhibitSpecifiedBaseResidueTypesCreator &) –> class core::pack::task::operation::ProhibitSpecifiedBaseResidueTypesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Instantiate a new TaskOperation
C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) str ¶
C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ReadResfile¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ReadResfile::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, : pyrosetta.rosetta.core.pack.task.operation.ReadResfile) pyrosetta.rosetta.core.pack.task.operation.ReadResfile ¶
C++: core::pack::task::operation::ReadResfile::operator=(const class core::pack::task::operation::ReadResfile &) –> class core::pack::task::operation::ReadResfile &
- cache_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) None ¶
- Read in the resfile and store it, so that it
doesn’t have to be read over and over again at apply time.
C++: core::pack::task::operation::ReadResfile::cache_resfile() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ReadResfile::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- default_filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) None ¶
queries options system for resfile name
C++: core::pack::task::operation::ReadResfile::default_filename() –> void
- filename(*args, **kwargs)¶
Overloaded function.
filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, filename: str) -> None
C++: core::pack::task::operation::ReadResfile::filename(const std::string &) –> void
filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) -> str
C++: core::pack::task::operation::ReadResfile::filename() const –> const std::string &
- static keyname() str ¶
C++: core::pack::task::operation::ReadResfile::keyname() –> std::string
- static list_options_read(options: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) None ¶
C++: core::pack::task::operation::ReadResfile::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ReadResfile::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ReadResfile::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Get the residue selector, if one exists. (Const-access owning pointer).
Returns NULL pointer if one does not.
Vikram K. Mulligan (vmullig.edu).
C++: core::pack::task::operation::ReadResfile::residue_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_cached_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, file_contents: str) None ¶
- Allows code to provide resfile contents, so that this TaskOperation doesn’t directly have to
handle file i/o. Handly on large systems (e.g. Blue Gene), where one might only want the master process to read a file.
C++: core::pack::task::operation::ReadResfile::set_cached_resfile(const std::string &) –> void
- set_residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, selector_in: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
Set the residue selector.
The input selector is cloned and the clone is stored.
Vikram K. Mulligan (vmullig.edu).
C++: core::pack::task::operation::ReadResfile::set_residue_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ReadResfile::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents¶
Bases:
ReadResfile
written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose’s observer cache for this to work properly
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, pose: pyrosetta.rosetta.core.pose.Pose, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, : pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::operator=(const class core::pack::task::operation::ReadResfileAndObeyLengthEvents &) –> class core::pack::task::operation::ReadResfileAndObeyLengthEvents &
- cache_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) None ¶
- Read in the resfile and store it, so that it
doesn’t have to be read over and over again at apply time.
C++: core::pack::task::operation::ReadResfile::cache_resfile() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- default_filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) None ¶
queries options system for resfile name
C++: core::pack::task::operation::ReadResfile::default_filename() –> void
- filename(*args, **kwargs)¶
Overloaded function.
filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, filename: str) -> None
C++: core::pack::task::operation::ReadResfile::filename(const std::string &) –> void
filename(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) -> str
C++: core::pack::task::operation::ReadResfile::filename() const –> const std::string &
- static keyname() str ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::keyname() –> std::string
- static list_options_read(options: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) None ¶
C++: core::pack::task::operation::ReadResfile::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- resfile_commands(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEvents, resfile_seqpos: int, contents: pyrosetta.rosetta.core.pack.task.ResfileContents, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) pyrosetta.rosetta.std.list_std_shared_ptr_const_core_pack_task_ResfileCommand_t ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEvents::resfile_commands(const unsigned long, const class core::pack::task::ResfileContents &, const class core::pack::task::PackerTask &) const –> const class std::list<class std::shared_ptr<const class core::pack::task::ResfileCommand>, class std::allocator<class std::shared_ptr<const class core::pack::task::ResfileCommand> > > &
- residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Get the residue selector, if one exists. (Const-access owning pointer).
Returns NULL pointer if one does not.
Vikram K. Mulligan (vmullig.edu).
C++: core::pack::task::operation::ReadResfile::residue_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_cached_resfile(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, file_contents: str) None ¶
- Allows code to provide resfile contents, so that this TaskOperation doesn’t directly have to
handle file i/o. Handly on large systems (e.g. Blue Gene), where one might only want the master process to read a file.
C++: core::pack::task::operation::ReadResfile::set_cached_resfile(const std::string &) –> void
- set_residue_selector(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfile, selector_in: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
Set the residue selector.
The input selector is cloned and the clone is stored.
Vikram K. Mulligan (vmullig.edu).
C++: core::pack::task::operation::ReadResfile::set_residue_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ReadResfile::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator, : pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator) pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator::operator=(const class core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator &) –> class core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator) str ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileAndObeyLengthEventsCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ReadResfileAndObeyLengthEventsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator, : pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator) pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator ¶
C++: core::pack::task::operation::ReadResfileCreator::operator=(const class core::pack::task::operation::ReadResfileCreator &) –> class core::pack::task::operation::ReadResfileCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ReadResfileCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator) str ¶
C++: core::pack::task::operation::ReadResfileCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ReadResfileCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ReadResfileCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ReplicateTask¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ReplicateTask, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ReplicateTask::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ReplicateTask, : pyrosetta.rosetta.core.pack.task.operation.ReplicateTask) pyrosetta.rosetta.core.pack.task.operation.ReplicateTask ¶
C++: core::pack::task::operation::ReplicateTask::operator=(const class core::pack::task::operation::ReplicateTask &) –> class core::pack::task::operation::ReplicateTask &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ReplicateTask) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::ReplicateTask::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- set_native_task(self: pyrosetta.rosetta.core.pack.task.operation.ReplicateTask, native_task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::ReplicateTask::set_native_task(class std::shared_ptr<class core::pack::task::PackerTask>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.ResFilter¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResFilter, : pyrosetta.rosetta.core.pack.task.operation.ResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResFilter::operator=(const class core::pack::task::operation::ResFilter &) –> class core::pack::task::operation::ResFilter &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- class pyrosetta.rosetta.core.pack.task.operation.ResFilterComposition¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterComposition, : pyrosetta.rosetta.core.pack.task.operation.ResFilterComposition) pyrosetta.rosetta.core.pack.task.operation.ResFilterComposition ¶
C++: core::pack::task::operation::ResFilterComposition::operator=(const class core::pack::task::operation::ResFilterComposition &) –> class core::pack::task::operation::ResFilterComposition &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static define_composition_schema(xsd: utility::tag::XMLSchemaDefinition) utility::tag::XMLSchemaComplexTypeGenerator ¶
C++: core::pack::task::operation::ResFilterComposition::define_composition_schema(class utility::tag::XMLSchemaDefinition &) –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>
- class pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator¶
Bases:
pybind11_object
The ResFilterCreator class’s responsibilities are to create on demand a new ResFilter class. The ResFilterCreator must register itself with the ResFilterFactory at load time (before main() begins) so that the ResFilterFactory is ready to start creating ResFilters by the time any protocol requests one.
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator ¶
C++: core::pack::task::operation::ResFilterCreator::operator=(const class core::pack::task::operation::ResFilterCreator &) –> class core::pack::task::operation::ResFilterCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
Instantiate a new ResFilter
C++: core::pack::task::operation::ResFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) str ¶
C++: core::pack::task::operation::ResFilterCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory¶
Bases:
SingletonBase_core_pack_task_operation_ResFilterFactory_t
- add_creator(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, : pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) None ¶
add a prototype, using its default type name as the map key
C++: core::pack::task::operation::ResFilterFactory::add_creator(class std::shared_ptr<class core::pack::task::operation::ResFilterCreator>) –> void
- define_res_filter_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, xsd: utility::tag::XMLSchemaDefinition) None ¶
- The %ResFilterFactory is the point of entry for the definition of the XML Schemas
for every ResFilter that may be instantiated from a file. It is responsible for defining an xs:group named “res_filter” listing each of the residue-filter-complex types that may be initialized using the %ResFilterFactory and to iterate across each of the ResFilterCreator it contains asking them for the XML schema of the ResFilter they are responsible for creating.
C++: core::pack::task::operation::ResFilterFactory::define_res_filter_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- factory_register(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, : pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) None ¶
C++: core::pack::task::operation::ResFilterFactory::factory_register(class std::shared_ptr<class core::pack::task::operation::ResFilterCreator>) –> void
- static get_instance() core::pack::task::operation::ResFilterFactory ¶
C++: utility::SingletonBase<core::pack::task::operation::ResFilterFactory>::get_instance() –> class core::pack::task::operation::ResFilterFactory *
- has_type(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, : str) bool ¶
C++: core::pack::task::operation::ResFilterFactory::has_type(const std::string &) const –> bool
- newResFilter(*args, **kwargs)¶
Overloaded function.
newResFilter(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, : str) -> pyrosetta.rosetta.core.pack.task.operation.ResFilter
return new ResFilter by key lookup in filter_map_; new ResFilter does not parse an input Tag
C++: core::pack::task::operation::ResFilterFactory::newResFilter(const std::string &) const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
newResFilter(self: pyrosetta.rosetta.core.pack.task.operation.ResFilterFactory, : str, tag: pyrosetta.rosetta.utility.tag.Tag) -> pyrosetta.rosetta.core.pack.task.operation.ResFilter
return new ResFilter by key lookup in filter_map_ new ResFilter parses Tag if provided
C++: core::pack::task::operation::ResFilterFactory::newResFilter(const std::string &, class std::shared_ptr<const class utility::tag::Tag>) const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static res_filter_xml_schema_group_name() str ¶
The name given to the XML schema group of all ResFilter s.
C++: core::pack::task::operation::ResFilterFactory::res_filter_xml_schema_group_name() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation¶
Bases:
pybind11_object
- apply(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
- Change a ResidueLevelTask in some way. The input pose is the one to which the input
task will be later applied.
C++: core::pack::task::operation::ResLvlTaskOperation::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::ResLvlTaskOperation::operator=(const class core::pack::task::operation::ResLvlTaskOperation &) –> class core::pack::task::operation::ResLvlTaskOperation &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
- Create another task operation of the type matching the most-derived
version of the class.
C++: core::pack::task::operation::ResLvlTaskOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.utility.tag.Tag) None ¶
parser xml-like tags to set class data/parameters
C++: core::pack::task::operation::ResLvlTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator¶
Bases:
pybind11_object
The ResLvlTaskOperationCreator class’s responsibilities are to create on demand a new ResLvlTaskOperation class. The ResLvlTaskOperationCreator must register itself with the ResLvlTaskOperationFactory at load time (before main() begins) so that the ResLvlTaskOperationFactory is ready to start creating ResLvlTaskOperations by the time any protocol requests one.
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator ¶
C++: core::pack::task::operation::ResLvlTaskOperationCreator::operator=(const class core::pack::task::operation::ResLvlTaskOperationCreator &) –> class core::pack::task::operation::ResLvlTaskOperationCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
Instantiate a new ResLvlTaskOperation
C++: core::pack::task::operation::ResLvlTaskOperationCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) str ¶
C++: core::pack::task::operation::ResLvlTaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::ResLvlTaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory¶
Bases:
SingletonBase_core_pack_task_operation_ResLvlTaskOperationFactory_t
- add_creator(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) None ¶
add a prototype, using its default type name as the map key
C++: core::pack::task::operation::ResLvlTaskOperationFactory::add_creator(class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperationCreator>) –> void
- creator_map(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory) pyrosetta.rosetta.std.map_std_string_std_shared_ptr_core_pack_task_operation_ResLvlTaskOperationCreator_t_std_allocator_std_pair_const_std_string_std_shared_ptr_core_pack_task_operation_ResLvlTaskOperationCreator_t ¶
Access the creator map (for unit testing).
C++: core::pack::task::operation::ResLvlTaskOperationFactory::creator_map() const –> const class std::map<std::string, class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperationCreator>, struct std::less<std::string >, class std::allocator<struct std::pair<const std::string, class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperationCreator> > > > &
- define_res_lvl_task_op_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, xsd: utility::tag::XMLSchemaDefinition) None ¶
- The %ResLvlTaskOperationFactory is the point of entry for the definition of the XML Schemas
for every ResLvlTaskOperation that may be instantiated from a file. It is responsible for defining an xs:group named “res_lvl_task_op” listing each of the residue-level-task-operation-complex types that may be initialized using the %ResLvlTaskOperationFactory and to iterate across each of the ResLvlTaskOperationCreator it contains asking them for the XML schema of the ResLvlTaskOperation they are responsible for creating.
C++: core::pack::task::operation::ResLvlTaskOperationFactory::define_res_lvl_task_op_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- factory_register(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) None ¶
C++: core::pack::task::operation::ResLvlTaskOperationFactory::factory_register(class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperationCreator>) –> void
- get_citation_humanreadable(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, taskop_name: str) str ¶
Get a human-readable listing of the citations for a given residue level task operation, by taskop name.
Returns an empty string if there are no citations.
Vikram K. Mulligan (vmulligan.org).
C++: core::pack::task::operation::ResLvlTaskOperationFactory::get_citation_humanreadable(const std::string &) const –> std::string
- static get_instance() core::pack::task::operation::ResLvlTaskOperationFactory ¶
C++: utility::SingletonBase<core::pack::task::operation::ResLvlTaskOperationFactory>::get_instance() –> class core::pack::task::operation::ResLvlTaskOperationFactory *
- has_type(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, : str) bool ¶
C++: core::pack::task::operation::ResLvlTaskOperationFactory::has_type(const std::string &) const –> bool
- newRLTO(*args, **kwargs)¶
Overloaded function.
newRLTO(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, : str) -> pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation
return new ResLvlTaskOperation by key lookup in rlto_map_
C++: core::pack::task::operation::ResLvlTaskOperationFactory::newRLTO(const std::string &) const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
newRLTO(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, class_keyname: str, tag: pyrosetta.rosetta.utility.tag.Tag) -> pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation
- return new ResLvlTaskOperation by key lookup in rlto_map_ (with the
new ResLvlTaskOperation parsing the input Tag)
C++: core::pack::task::operation::ResLvlTaskOperationFactory::newRLTO(const std::string &, class std::shared_ptr<const class utility::tag::Tag>) const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationFactory, task_operation_name: str, xsd: utility::tag::XMLSchemaDefinition) None ¶
Get the XML schema for a given ResLvlTaskOperation.
Throws an error if the ResLvlTaskOperation is unknown to Rosetta.
Vikram K. Mulligan (vmullig.edu)
C++: core::pack::task::operation::ResLvlTaskOperationFactory::provide_xml_schema(const std::string &, class utility::tag::XMLSchemaDefinition &) const –> void
- static res_lvl_task_op_xml_schema_group_name() str ¶
The name given to the XML schema group of all ResLvlTaskOperation s.
C++: core::pack::task::operation::ResLvlTaskOperationFactory::res_lvl_task_op_xml_schema_group_name() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty ¶
C++: core::pack::task::operation::ResidueHasProperty::operator=(const class core::pack::task::operation::ResidueHasProperty &) –> class core::pack::task::operation::ResidueHasProperty &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueHasProperty::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueHasProperty::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResidueHasProperty::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ResidueHasProperty::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- property(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) str ¶
C++: core::pack::task::operation::ResidueHasProperty::property() const –> const std::string &
- class pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator ¶
C++: core::pack::task::operation::ResidueHasPropertyCreator::operator=(const class core::pack::task::operation::ResidueHasPropertyCreator &) –> class core::pack::task::operation::ResidueHasPropertyCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueHasPropertyCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasPropertyCreator) str ¶
C++: core::pack::task::operation::ResidueHasPropertyCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs, : pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs) pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs ¶
C++: core::pack::task::operation::ResidueIndexIs::operator=(const class core::pack::task::operation::ResidueIndexIs &) –> class core::pack::task::operation::ResidueIndexIs &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueIndexIs::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueIndexIs::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- indices(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs) pyrosetta.rosetta.utility.vector1_unsigned_long ¶
C++: core::pack::task::operation::ResidueIndexIs::indices() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &
- static keyname() str ¶
C++: core::pack::task::operation::ResidueIndexIs::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator ¶
C++: core::pack::task::operation::ResidueIndexIsCreator::operator=(const class core::pack::task::operation::ResidueIndexIsCreator &) –> class core::pack::task::operation::ResidueIndexIsCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueIndexIsCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsCreator) str ¶
C++: core::pack::task::operation::ResidueIndexIsCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsnt¶
Bases:
ResidueIndexIs
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsnt, : pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsnt) pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsnt ¶
C++: core::pack::task::operation::ResidueIndexIsnt::operator=(const class core::pack::task::operation::ResidueIndexIsnt &) –> class core::pack::task::operation::ResidueIndexIsnt &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsnt) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueIndexIsnt::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueIndexIs::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- indices(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIs) pyrosetta.rosetta.utility.vector1_unsigned_long ¶
C++: core::pack::task::operation::ResidueIndexIs::indices() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &
- static keyname() str ¶
C++: core::pack::task::operation::ResidueIndexIsnt::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator ¶
C++: core::pack::task::operation::ResidueIndexIsntCreator::operator=(const class core::pack::task::operation::ResidueIndexIsntCreator &) –> class core::pack::task::operation::ResidueIndexIsntCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueIndexIsntCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueIndexIsntCreator) str ¶
C++: core::pack::task::operation::ResidueIndexIsntCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueLacksProperty¶
Bases:
ResidueHasProperty
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueLacksProperty, : pyrosetta.rosetta.core.pack.task.operation.ResidueLacksProperty) pyrosetta.rosetta.core.pack.task.operation.ResidueLacksProperty ¶
C++: core::pack::task::operation::ResidueLacksProperty::operator=(const class core::pack::task::operation::ResidueLacksProperty &) –> class core::pack::task::operation::ResidueLacksProperty &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueLacksProperty) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueLacksProperty::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueHasProperty::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResidueLacksProperty::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ResidueHasProperty::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- property(self: pyrosetta.rosetta.core.pack.task.operation.ResidueHasProperty) str ¶
C++: core::pack::task::operation::ResidueHasProperty::property() const –> const std::string &
- class pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator ¶
C++: core::pack::task::operation::ResidueLacksPropertyCreator::operator=(const class core::pack::task::operation::ResidueLacksPropertyCreator &) –> class core::pack::task::operation::ResidueLacksPropertyCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueLacksPropertyCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueLacksPropertyCreator) str ¶
C++: core::pack::task::operation::ResidueLacksPropertyCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueName3Is¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3Is, : pyrosetta.rosetta.core.pack.task.operation.ResidueName3Is) pyrosetta.rosetta.core.pack.task.operation.ResidueName3Is ¶
C++: core::pack::task::operation::ResidueName3Is::operator=(const class core::pack::task::operation::ResidueName3Is &) –> class core::pack::task::operation::ResidueName3Is &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3Is) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueName3Is::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueName3Is::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResidueName3Is::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator ¶
C++: core::pack::task::operation::ResidueName3IsCreator::operator=(const class core::pack::task::operation::ResidueName3IsCreator &) –> class core::pack::task::operation::ResidueName3IsCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueName3IsCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsCreator) str ¶
C++: core::pack::task::operation::ResidueName3IsCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueName3Isnt¶
Bases:
ResidueName3Is
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3Isnt, : pyrosetta.rosetta.core.pack.task.operation.ResidueName3Isnt) pyrosetta.rosetta.core.pack.task.operation.ResidueName3Isnt ¶
C++: core::pack::task::operation::ResidueName3Isnt::operator=(const class core::pack::task::operation::ResidueName3Isnt &) –> class core::pack::task::operation::ResidueName3Isnt &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3Isnt) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueName3Isnt::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResidueName3Is::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResidueName3Isnt::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator ¶
C++: core::pack::task::operation::ResidueName3IsntCreator::operator=(const class core::pack::task::operation::ResidueName3IsntCreator &) –> class core::pack::task::operation::ResidueName3IsntCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueName3IsntCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueName3IsntCreator) str ¶
C++: core::pack::task::operation::ResidueName3IsntCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::operator=(const class core::pack::task::operation::ResiduePDBIndexIs &) –> class core::pack::task::operation::ResiduePDBIndexIs &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes(xsd: utility::tag::XMLSchemaDefinition) pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::get_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- indices(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs) pyrosetta.rosetta.utility.vector1_core_pack_task_operation_ResiduePDBIndexIs_ChainPos ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::indices() const –> const class utility::vector1<struct core::pack::task::operation::ResiduePDBIndexIs::ChainPos, class std::allocator<struct core::pack::task::operation::ResiduePDBIndexIs::ChainPos> > &
- static keyname() str ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator ¶
C++: core::pack::task::operation::ResiduePDBIndexIsCreator::operator=(const class core::pack::task::operation::ResiduePDBIndexIsCreator &) –> class core::pack::task::operation::ResiduePDBIndexIsCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBIndexIsCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsCreator) str ¶
C++: core::pack::task::operation::ResiduePDBIndexIsCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsnt¶
Bases:
ResiduePDBIndexIs
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsnt, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsnt) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsnt ¶
C++: core::pack::task::operation::ResiduePDBIndexIsnt::operator=(const class core::pack::task::operation::ResiduePDBIndexIsnt &) –> class core::pack::task::operation::ResiduePDBIndexIsnt &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsnt) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBIndexIsnt::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes(xsd: utility::tag::XMLSchemaDefinition) pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::get_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- indices(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIs) pyrosetta.rosetta.utility.vector1_core_pack_task_operation_ResiduePDBIndexIs_ChainPos ¶
C++: core::pack::task::operation::ResiduePDBIndexIs::indices() const –> const class utility::vector1<struct core::pack::task::operation::ResiduePDBIndexIs::ChainPos, class std::allocator<struct core::pack::task::operation::ResiduePDBIndexIs::ChainPos> > &
- static keyname() str ¶
C++: core::pack::task::operation::ResiduePDBIndexIsnt::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator ¶
C++: core::pack::task::operation::ResiduePDBIndexIsntCreator::operator=(const class core::pack::task::operation::ResiduePDBIndexIsntCreator &) –> class core::pack::task::operation::ResiduePDBIndexIsntCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBIndexIsntCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBIndexIsntCreator) str ¶
C++: core::pack::task::operation::ResiduePDBIndexIsntCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::operator=(const class core::pack::task::operation::ResiduePDBInfoHasLabel &) –> class core::pack::task::operation::ResiduePDBInfoHasLabel &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- property(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel) str ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::property() const –> const std::string &
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabelCreator::operator=(const class core::pack::task::operation::ResiduePDBInfoHasLabelCreator &) –> class core::pack::task::operation::ResiduePDBInfoHasLabelCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabelCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabelCreator) str ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabelCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabel¶
Bases:
ResiduePDBInfoHasLabel
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabel, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabel) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabel ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabel::operator=(const class core::pack::task::operation::ResiduePDBInfoLacksLabel &) –> class core::pack::task::operation::ResiduePDBInfoLacksLabel &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabel) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabel::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static get_xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::get_xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- static keyname() str ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabel::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- property(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoHasLabel) str ¶
C++: core::pack::task::operation::ResiduePDBInfoHasLabel::property() const –> const std::string &
- class pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator, : pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator) pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabelCreator::operator=(const class core::pack::task::operation::ResiduePDBInfoLacksLabelCreator &) –> class core::pack::task::operation::ResiduePDBInfoLacksLabelCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabelCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResiduePDBInfoLacksLabelCreator) str ¶
C++: core::pack::task::operation::ResiduePDBInfoLacksLabelCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilter¶
Bases:
ResFilter
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilter, : pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilter) pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilter ¶
C++: core::pack::task::operation::ResidueTypeFilter::operator=(const class core::pack::task::operation::ResidueTypeFilter &) –> class core::pack::task::operation::ResidueTypeFilter &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilter) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueTypeFilter::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- static keyname() str ¶
C++: core::pack::task::operation::ResidueTypeFilter::keyname() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator¶
Bases:
ResFilterCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator, : pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator ¶
C++: core::pack::task::operation::ResidueTypeFilterCreator::operator=(const class core::pack::task::operation::ResidueTypeFilterCreator &) –> class core::pack::task::operation::ResidueTypeFilterCreator &
- create_res_filter(self: pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator) pyrosetta.rosetta.core.pack.task.operation.ResFilter ¶
C++: core::pack::task::operation::ResidueTypeFilterCreator::create_res_filter() const –> class std::shared_ptr<class core::pack::task::operation::ResFilter>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.ResidueTypeFilterCreator) str ¶
C++: core::pack::task::operation::ResidueTypeFilterCreator::keyname() const –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
- if resid_ is zero, will apply RestrictAbsentCanonicalAAs to all residues
in the pose. O/w only to resid_
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAAS &) –> class core::pack::task::operation::RestrictAbsentCanonicalAAS &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- include_residue(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, resid: int) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::include_residue(const unsigned long) –> void
- keep_aas(*args, **kwargs)¶
Overloaded function.
keep_aas(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, keep_aas: str) -> None
a human-readible string-based mutator
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::keep_aas(const std::string &) –> void
keep_aas(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, keep_aas: pyrosetta.rosetta.utility.vector1_bool) -> None
- direct vector1-basd mutator. If an amino acid is not present (false) in the boolean vector,
then do not allow it at this position. The boolean vector is a 20-length vector in alphabetical order by one-letter code.
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::keep_aas(class utility::vector1<bool, class std::allocator<bool> >) –> void
- static keyname() str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAAS, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAAS::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASCreator::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAASCreator &) –> class core::pack::task::operation::RestrictAbsentCanonicalAASCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator) str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT¶
Bases:
ResLvlTaskOperation
- aas_to_keep(*args, **kwargs)¶
Overloaded function.
aas_to_keep(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT, : pyrosetta.rosetta.utility.vector1_bool) -> None
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::aas_to_keep(const class utility::vector1<bool, class std::allocator<bool> > &) –> void
aas_to_keep(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT, : str) -> None
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::aas_to_keep(const std::string &) –> void
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT &) –> class core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator &) –> class core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator) str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASExceptNativeRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASExceptNativeRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT¶
Bases:
ResLvlTaskOperation
- aas_to_keep(*args, **kwargs)¶
Overloaded function.
aas_to_keep(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT, : pyrosetta.rosetta.utility.vector1_bool) -> None
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::aas_to_keep(const class utility::vector1<bool, class std::allocator<bool> > &) –> void
aas_to_keep(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT, : str) -> None
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::aas_to_keep(const std::string &) –> void
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAASRLT &) –> class core::pack::task::operation::RestrictAbsentCanonicalAASRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLT, : pyrosetta.rosetta.utility.tag.Tag) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLT::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator::operator=(const class core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator &) –> class core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator) str ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictAbsentCanonicalAASRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictAbsentCanonicalAASRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation¶
Bases:
TaskOperation
A task operation that restricts the number of threads allowed for interaction graph computation.
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
- Alter a PackerTask by reducing the number of allowed threads for packer setup to the number
specified by this TaskOperation.
Does nothing if this TaskOperation’s allowed threads are set to zero or if the number already allowed in the PackerTask is less than the number allowed by the TaskOperation.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation, : pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation) pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation ¶
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::operator=(const class core::pack::task::operation::RestrictInteractionGraphThreadsOperation &) –> class core::pack::task::operation::RestrictInteractionGraphThreadsOperation &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Clone operation: make a copy of this object, and return a smart pointer to the copy.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
Return the name used to construct this TaskOperation from an XML file.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Configure from a RosettaScripts XML tag.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
Describe the format of XML file used to initialize this TaskOperation.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_thread_limit(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation, setting: int) None ¶
Set the maximum number of threads that this TaskOperation will allow for packer setup.
Set this to zero to indicate no limit.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::set_thread_limit(const unsigned long) –> void
- thread_limit(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperation) int ¶
Get the maximum number of threads that this TaskOperation will allow for packer setup.
Zero indicates no limit.
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperation::thread_limit() const –> unsigned long
- class pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator ¶
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator::operator=(const class core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator &) –> class core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator) str ¶
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictInteractionGraphThreadsOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictInteractionGraphThreadsOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::operator=(const class core::pack::task::operation::RestrictResidueToRepacking &) –> class core::pack::task::operation::RestrictResidueToRepacking &
- clear(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) None ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::clear() –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- include_residue(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, resid: int) None ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::include_residue(unsigned long) –> void
- static keyname() str ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepacking, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RestrictResidueToRepacking::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator ¶
C++: core::pack::task::operation::RestrictResidueToRepackingCreator::operator=(const class core::pack::task::operation::RestrictResidueToRepackingCreator &) –> class core::pack::task::operation::RestrictResidueToRepackingCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictResidueToRepackingCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator) str ¶
C++: core::pack::task::operation::RestrictResidueToRepackingCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictResidueToRepackingCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictResidueToRepackingCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RestrictToRepacking::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking, : pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking) pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking ¶
C++: core::pack::task::operation::RestrictToRepacking::operator=(const class core::pack::task::operation::RestrictToRepacking &) –> class core::pack::task::operation::RestrictToRepacking &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictToRepacking::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictToRepacking::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepacking, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RestrictToRepacking::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator ¶
C++: core::pack::task::operation::RestrictToRepackingCreator::operator=(const class core::pack::task::operation::RestrictToRepackingCreator &) –> class core::pack::task::operation::RestrictToRepackingCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictToRepackingCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator) str ¶
C++: core::pack::task::operation::RestrictToRepackingCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictToRepackingCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT¶
Bases:
ResLvlTaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT, : pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::RestrictToRepackingRLT::apply(class core::pack::task::ResidueLevelTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT, : pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT) pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT ¶
C++: core::pack::task::operation::RestrictToRepackingRLT::operator=(const class core::pack::task::operation::RestrictToRepackingRLT &) –> class core::pack::task::operation::RestrictToRepackingRLT &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLT) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictToRepackingRLT::clone() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictToRepackingRLT::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.utility.tag.Tag) None ¶
parser xml-like tags to set class data/parameters
C++: core::pack::task::operation::ResLvlTaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::ResLvlTaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator¶
Bases:
ResLvlTaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator ¶
C++: core::pack::task::operation::RestrictToRepackingRLTCreator::operator=(const class core::pack::task::operation::RestrictToRepackingRLTCreator &) –> class core::pack::task::operation::RestrictToRepackingRLTCreator &
- create_res_level_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator) pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperation ¶
C++: core::pack::task::operation::RestrictToRepackingRLTCreator::create_res_level_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator) str ¶
C++: core::pack::task::operation::RestrictToRepackingRLTCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToRepackingRLTCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictToRepackingRLTCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real residue-level task operation. True only for dummy residue-level task operations created for unit tests.
C++: core::pack::task::operation::ResLvlTaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties¶
Bases:
TaskOperation
Restrict the palette of ResidueTypes to those with the given properties.
Labonte <JWLabonte.edu>
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RestrictToResidueProperties::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties, : pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties) pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties ¶
C++: core::pack::task::operation::RestrictToResidueProperties::operator=(const class core::pack::task::operation::RestrictToResidueProperties &) –> class core::pack::task::operation::RestrictToResidueProperties &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictToResidueProperties::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictToResidueProperties::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties, tag: pyrosetta.rosetta.utility.tag.Tag, map: pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RestrictToResidueProperties::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- properties(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties) pyrosetta.rosetta.utility.vector1_core_chemical_ResidueProperty ¶
C++: core::pack::task::operation::RestrictToResidueProperties::properties() const –> const class utility::vector1<enum core::chemical::ResidueProperty, class std::allocator<enum core::chemical::ResidueProperty> > &
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictToResidueProperties::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
C++: core::pack::task::operation::RestrictToResidueProperties::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_properties(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties, properties: pyrosetta.rosetta.utility.vector1_core_chemical_ResidueProperty) None ¶
C++: core::pack::task::operation::RestrictToResidueProperties::set_properties(const class utility::vector1<enum core::chemical::ResidueProperty, class std::allocator<enum core::chemical::ResidueProperty> > &) –> void
- set_selector(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResidueProperties, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
C++: core::pack::task::operation::RestrictToResidueProperties::set_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::RestrictToResidueProperties::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToResiduePropertiesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToResiduePropertiesCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictToResiduePropertiesCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictToResiduePropertiesCreator ¶
C++: core::pack::task::operation::RestrictToResiduePropertiesCreator::operator=(const class core::pack::task::operation::RestrictToResiduePropertiesCreator &) –> class core::pack::task::operation::RestrictToResiduePropertiesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Instantiate a new TaskOperation
C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) str ¶
C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes¶
Bases:
TaskOperation
Restrict the palette of ResidueTypes to the base ResidueTypes provided by name.
Labonte <JWLabonte.edu>
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes, : pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::operator=(const class core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes &) –> class core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes &
- base_types(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes) pyrosetta.rosetta.utility.vector1_std_string ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::base_types() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes, tag: pyrosetta.rosetta.utility.tag.Tag, map: pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- selector(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
- set_base_types(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes, base_types: pyrosetta.rosetta.utility.vector1_std_string) None ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::set_base_types(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void
- set_selector(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypes, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::set_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void
- static xml_schema_attributes() pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::xml_schema_attributes() –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- class pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypesCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypesCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypesCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictToSpecifiedBaseResidueTypesCreator ¶
C++: core::pack::task::operation::RestrictToSpecifiedBaseResidueTypesCreator::operator=(const class core::pack::task::operation::RestrictToSpecifiedBaseResidueTypesCreator &) –> class core::pack::task::operation::RestrictToSpecifiedBaseResidueTypesCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Instantiate a new TaskOperation
C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) str ¶
C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign¶
Bases:
TaskOperation
RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, : pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RestrictYSDesign::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, : pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign ¶
C++: core::pack::task::operation::RestrictYSDesign::operator=(const class core::pack::task::operation::RestrictYSDesign &) –> class core::pack::task::operation::RestrictYSDesign &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictYSDesign::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- include_gly(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, gly: bool) None ¶
C++: core::pack::task::operation::RestrictYSDesign::include_gly(const bool) –> void
- include_resid(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesign, resid: int) None ¶
C++: core::pack::task::operation::RestrictYSDesign::include_resid(const unsigned long) –> void
- static keyname() str ¶
C++: core::pack::task::operation::RestrictYSDesign::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator, : pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator) pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator ¶
C++: core::pack::task::operation::RestrictYSDesignCreator::operator=(const class core::pack::task::operation::RestrictYSDesignCreator &) –> class core::pack::task::operation::RestrictYSDesignCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RestrictYSDesignCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator) str ¶
C++: core::pack::task::operation::RestrictYSDesignCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RestrictYSDesignCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RestrictYSDesignCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion¶
Bases:
TaskOperation
rotamer explosion for a residue
- apply(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::RotamerExplosion::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion) pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion ¶
C++: core::pack::task::operation::RotamerExplosion::operator=(const class core::pack::task::operation::RotamerExplosion &) –> class core::pack::task::operation::RotamerExplosion &
- chi(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, c: int) None ¶
C++: core::pack::task::operation::RotamerExplosion::chi(const unsigned long) –> void
- clone(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RotamerExplosion::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::RotamerExplosion::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::RotamerExplosion::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RotamerExplosion::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- resid(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, r: int) None ¶
C++: core::pack::task::operation::RotamerExplosion::resid(const unsigned long) –> void
- sample_level(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosion, s: pyrosetta.rosetta.core.pack.task.ExtraRotSample) None ¶
C++: core::pack::task::operation::RotamerExplosion::sample_level(const enum core::pack::task::ExtraRotSample) –> void
- class pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator, : pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator) pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator ¶
C++: core::pack::task::operation::RotamerExplosionCreator::operator=(const class core::pack::task::operation::RotamerExplosionCreator &) –> class core::pack::task::operation::RotamerExplosionCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::RotamerExplosionCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator) str ¶
C++: core::pack::task::operation::RotamerExplosionCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.RotamerExplosionCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::RotamerExplosionCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::SetRotamerCouplings::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings, : pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings) pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings ¶
C++: core::pack::task::operation::SetRotamerCouplings::operator=(const class core::pack::task::operation::SetRotamerCouplings &) –> class core::pack::task::operation::SetRotamerCouplings &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::SetRotamerCouplings::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::SetRotamerCouplings::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::SetRotamerCouplings::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_couplings(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplings, couplings: pyrosetta.rosetta.core.pack.rotamer_set.RotamerCouplings) None ¶
C++: core::pack::task::operation::SetRotamerCouplings::set_couplings(class std::shared_ptr<class core::pack::rotamer_set::RotamerCouplings>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator, : pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator) pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator ¶
C++: core::pack::task::operation::SetRotamerCouplingsCreator::operator=(const class core::pack::task::operation::SetRotamerCouplingsCreator &) –> class core::pack::task::operation::SetRotamerCouplingsCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::SetRotamerCouplingsCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator) str ¶
C++: core::pack::task::operation::SetRotamerCouplingsCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerCouplingsCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::SetRotamerCouplingsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::SetRotamerLinks::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks, : pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks) pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks ¶
C++: core::pack::task::operation::SetRotamerLinks::operator=(const class core::pack::task::operation::SetRotamerLinks &) –> class core::pack::task::operation::SetRotamerLinks &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::SetRotamerLinks::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::SetRotamerLinks::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::SetRotamerLinks::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_links(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinks, links: pyrosetta.rosetta.core.pack.rotamer_set.RotamerLinks) None ¶
C++: core::pack::task::operation::SetRotamerLinks::set_links(class std::shared_ptr<class core::pack::rotamer_set::RotamerLinks>) –> void
- class pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator, : pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator) pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator ¶
C++: core::pack::task::operation::SetRotamerLinksCreator::operator=(const class core::pack::task::operation::SetRotamerLinksCreator &) –> class core::pack::task::operation::SetRotamerLinksCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::SetRotamerLinksCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator) str ¶
C++: core::pack::task::operation::SetRotamerLinksCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.SetRotamerLinksCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::SetRotamerLinksCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶
Bases:
pybind11_object
- apply(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
- Change a packer task in some way. The input pose is the one to which the input
task will be later applied.
C++: core::pack::task::operation::TaskOperation::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.core.pack.task.operation.TaskOperation) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::TaskOperation::operator=(const class core::pack::task::operation::TaskOperation &) –> class core::pack::task::operation::TaskOperation &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
- Create another task operation of the type matching the most-derived
version of the class.
C++: core::pack::task::operation::TaskOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
Used to parse an xml-like tag to load parameters and properties.
C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- class pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator¶
Bases:
pybind11_object
The TaskOperationCreator class’s responsibilities are to create on demand a new TaskOperation class. The TaskOperationCreator must register itself with the TaskOperationFactory at load time (before main() begins) so that the TaskOperationFactory is ready to start creating TaskOperations by the time any protocol requests one.
- assign(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, : pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator ¶
C++: core::pack::task::operation::TaskOperationCreator::operator=(const class core::pack::task::operation::TaskOperationCreator &) –> class core::pack::task::operation::TaskOperationCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
Instantiate a new TaskOperation
C++: core::pack::task::operation::TaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) str ¶
C++: core::pack::task::operation::TaskOperationCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::TaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- class pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory¶
Bases:
SingletonBase_core_pack_task_operation_TaskOperationFactory_t
- add_creator(*args, **kwargs)¶
Overloaded function.
add_creator(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) -> None
add a prototype, using its default type name as the map key
C++: core::pack::task::operation::TaskOperationFactory::add_creator(class std::shared_ptr<class core::pack::task::operation::TaskOperationCreator>) –> void
add_creator(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.ResLvlTaskOperationCreator) -> None
pass through to child factories
C++: core::pack::task::operation::TaskOperationFactory::add_creator(class std::shared_ptr<class core::pack::task::operation::ResLvlTaskOperationCreator>) –> void
add_creator(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.ResFilterCreator) -> None
C++: core::pack::task::operation::TaskOperationFactory::add_creator(class std::shared_ptr<class core::pack::task::operation::ResFilterCreator>) –> void
- creator_map(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory) pyrosetta.rosetta.std.map_std_string_std_shared_ptr_core_pack_task_operation_TaskOperationCreator_t_std_allocator_std_pair_const_std_string_std_shared_ptr_core_pack_task_operation_TaskOperationCreator_t ¶
Read access to the map of creator names to creators – for unit testing purposes only
C++: core::pack::task::operation::TaskOperationFactory::creator_map() const –> const class std::map<std::string, class std::shared_ptr<class core::pack::task::operation::TaskOperationCreator>, struct std::less<std::string >, class std::allocator<struct std::pair<const std::string, class std::shared_ptr<class core::pack::task::operation::TaskOperationCreator> > > > &
- define_task_op_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, xsd: utility::tag::XMLSchemaDefinition) None ¶
- The %TaskOperationFactory is the point of entry for the definition of the XML Schemas
for every TaskOperation that may be instantiated from a file. It is responsible for defining an xs:group named “task_operation” listing each of the task-operation-complex types that may be initialized using the %TaskOperationFactory and to iterate across each of the TaskOperationCreator s it contains asking them for the XML schema of the TaskOperation they are responsible for creating.
C++: core::pack::task::operation::TaskOperationFactory::define_task_op_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- factory_register(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) None ¶
C++: core::pack::task::operation::TaskOperationFactory::factory_register(class std::shared_ptr<class core::pack::task::operation::TaskOperationCreator>) –> void
- get_citation_humanreadable(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, taskop_name: str) str ¶
Get a human-readable listing of the citations for a given taskop, by taskop name.
Returns an empty string if there are no citations.
Vikram K. Mulligan (vmulligan.org).
C++: core::pack::task::operation::TaskOperationFactory::get_citation_humanreadable(const std::string &) const –> std::string
- static get_instance() core::pack::task::operation::TaskOperationFactory ¶
C++: utility::SingletonBase<core::pack::task::operation::TaskOperationFactory>::get_instance() –> class core::pack::task::operation::TaskOperationFactory *
- has_type(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : str) bool ¶
C++: core::pack::task::operation::TaskOperationFactory::has_type(const std::string &) const –> bool
- newTaskOperation(*args, **kwargs)¶
Overloaded function.
newTaskOperation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : str, datamap: pyrosetta.rosetta.basic.datacache.DataMap) -> pyrosetta.rosetta.core.pack.task.operation.TaskOperation
newTaskOperation(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : str, datamap: pyrosetta.rosetta.basic.datacache.DataMap, : pyrosetta.rosetta.utility.tag.Tag) -> pyrosetta.rosetta.core.pack.task.operation.TaskOperation
return new TaskOperation by key lookup in task_operation_creator_map_ (new TaskOperation parses Tag if provided)
C++: core::pack::task::operation::TaskOperationFactory::newTaskOperation(const std::string &, class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- newTaskOperations(*args, **kwargs)¶
Overloaded function.
newTaskOperations(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pack_task_operation_TaskOperation_t, datamap: pyrosetta.rosetta.basic.datacache.DataMap, : pyrosetta.rosetta.utility.tag.Tag) -> None
fills vector with new TaskOperations from nested “TASKOPERATIONS” TagCOP
C++: core::pack::task::operation::TaskOperationFactory::newTaskOperations(class utility::vector1<class std::shared_ptr<class core::pack::task::operation::TaskOperation>, class std::allocator<class std::shared_ptr<class core::pack::task::operation::TaskOperation> > > &, class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) const –> void
newTaskOperations(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, : pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pack_task_operation_TaskOperation_t, datamap: pyrosetta.rosetta.basic.datacache.DataMap, : str) -> None
fills vector with new TaskOperations from xml-like tag file
C++: core::pack::task::operation::TaskOperationFactory::newTaskOperations(class utility::vector1<class std::shared_ptr<class core::pack::task::operation::TaskOperation>, class std::allocator<class std::shared_ptr<class core::pack::task::operation::TaskOperation> > > &, class basic::datacache::DataMap &, const std::string &) const –> void
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationFactory, task_operation_name: str, xsd: utility::tag::XMLSchemaDefinition) None ¶
Get the XML schema for a given TaskOperation.
Throws an error if the TaskOperation is unknown to Rosetta.
Vikram K. Mulligan (vmullig.edu)
C++: core::pack::task::operation::TaskOperationFactory::provide_xml_schema(const std::string &, class utility::tag::XMLSchemaDefinition &) const –> void
- static task_operation_xml_schema_group_name() str ¶
C++: core::pack::task::operation::TaskOperationFactory::task_operation_xml_schema_group_name() –> std::string
- class pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer¶
Bases:
TaskOperation
- apply(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void
- assign(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer, : pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer) pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::operator=(const class core::pack::task::operation::UseMultiCoolAnnealer &) –> class core::pack::task::operation::UseMultiCoolAnnealer &
- clone(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- static keyname() str ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::keyname() –> std::string
- parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer, Tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.
C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- set_states(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealer, states: int) None ¶
C++: core::pack::task::operation::UseMultiCoolAnnealer::set_states(unsigned long) –> void
- class pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator¶
Bases:
TaskOperationCreator
- assign(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator, : pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator ¶
C++: core::pack::task::operation::UseMultiCoolAnnealerCreator::operator=(const class core::pack::task::operation::UseMultiCoolAnnealerCreator &) –> class core::pack::task::operation::UseMultiCoolAnnealerCreator &
- create_task_operation(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator) pyrosetta.rosetta.core.pack.task.operation.TaskOperation ¶
C++: core::pack::task::operation::UseMultiCoolAnnealerCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>
- keyname(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator) str ¶
C++: core::pack::task::operation::UseMultiCoolAnnealerCreator::keyname() const –> std::string
- provide_xml_schema(self: pyrosetta.rosetta.core.pack.task.operation.UseMultiCoolAnnealerCreator, xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: core::pack::task::operation::UseMultiCoolAnnealerCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void
- skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) bool ¶
Indicate whether we skip adding citation information to the XML schema.
False for any real task operation. True only for dummy task operations created for unit tests.
C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool
- pyrosetta.rosetta.core.pack.task.operation.attributes_for_parse_residue_level_operations(attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) None ¶
////////////////// Attributes /////////////////////////
C++: core::pack::task::operation::attributes_for_parse_residue_level_operations(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void
- pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_res_filter(res_filter_name: str) str ¶
C++: core::pack::task::operation::complex_type_name_for_res_filter(const std::string &) –> std::string
- pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_res_lvl_task_op(res_lvl_task_op_name: str) str ¶
C++: core::pack::task::operation::complex_type_name_for_res_lvl_task_op(const std::string &) –> std::string
- pyrosetta.rosetta.core.pack.task.operation.complex_type_name_for_task_op(task_op_name: str) str ¶
C++: core::pack::task::operation::complex_type_name_for_task_op(const std::string &) –> std::string
- pyrosetta.rosetta.core.pack.task.operation.parse_residue_level_task_operations(: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap, : pyrosetta.rosetta.std.list_std_shared_ptr_const_core_pack_task_operation_ResLvlTaskOperation_t) None ¶
C++: core::pack::task::operation::parse_residue_level_task_operations(const class std::shared_ptr<const class utility::tag::Tag> &, class basic::datacache::DataMap &, class std::list<class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation>, class std::allocator<class std::shared_ptr<const class core::pack::task::operation::ResLvlTaskOperation> > > &) –> void
- pyrosetta.rosetta.core.pack.task.operation.parse_rotamer_sampling_data(tag: pyrosetta.rosetta.utility.tag.Tag, sampling_data: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData) None ¶
Initialize rotamer sampling data based on the options (attributes) in an input Tag.
C++: core::pack::task::operation::parse_rotamer_sampling_data(class std::shared_ptr<const class utility::tag::Tag>, struct core::pack::task::operation::ExtraRotamerSamplingData &) –> void
- pyrosetta.rosetta.core.pack.task.operation.res_filter_schema_w_attributes(*args, **kwargs)¶
Overloaded function.
res_filter_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, res_filter_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
res_filter_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, res_filter_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None
C++: core::pack::task::operation::res_filter_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const std::string &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const std::string &) –> void
- pyrosetta.rosetta.core.pack.task.operation.res_lvl_task_op_schema_empty(*args, **kwargs)¶
Overloaded function.
res_lvl_task_op_schema_empty(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str) -> None
res_lvl_task_op_schema_empty(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, description: str) -> None
C++: core::pack::task::operation::res_lvl_task_op_schema_empty(class utility::tag::XMLSchemaDefinition &, const std::string &, const std::string &) –> void
- pyrosetta.rosetta.core.pack.task.operation.res_lvl_task_op_schema_w_attributes(*args, **kwargs)¶
Overloaded function.
res_lvl_task_op_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
res_lvl_task_op_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None
C++: core::pack::task::operation::res_lvl_task_op_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const std::string &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const std::string &) –> void
- pyrosetta.rosetta.core.pack.task.operation.rlto_datamap_category() str ¶
/////Residue Level Task Operations /////////////////////
C++: core::pack::task::operation::rlto_datamap_category() –> const std::string &
- pyrosetta.rosetta.core.pack.task.operation.rotamer_sampling_data_xml_schema_attributes(xsd: utility::tag::XMLSchemaDefinition) pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t ¶
- Return the list of XML schema attributes that are read by the parse_rotamer_sampling_data
function.
C++: core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes(class utility::tag::XMLSchemaDefinition &) –> class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> >
- pyrosetta.rosetta.core.pack.task.operation.set_rotamer_sampling_data_for_RLT(sampling_data: pyrosetta.rosetta.core.pack.task.operation.ExtraRotamerSamplingData, res_task: pyrosetta.rosetta.core.pack.task.ResidueLevelTask) None ¶
C++: core::pack::task::operation::set_rotamer_sampling_data_for_RLT(const struct core::pack::task::operation::ExtraRotamerSamplingData &, class core::pack::task::ResidueLevelTask &) –> void
- pyrosetta.rosetta.core.pack.task.operation.task_op_schema_empty(*args, **kwargs)¶
Overloaded function.
task_op_schema_empty(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str) -> None
task_op_schema_empty(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, description: str) -> None
C++: core::pack::task::operation::task_op_schema_empty(class utility::tag::XMLSchemaDefinition &, const std::string &, const std::string &) –> void
- pyrosetta.rosetta.core.pack.task.operation.task_op_schema_w_attributes(*args, **kwargs)¶
Overloaded function.
task_op_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) -> None
task_op_schema_w_attributes(xsd: utility::tag::XMLSchemaDefinition, task_op_name: str, attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, description: str) -> None
C++: core::pack::task::operation::task_op_schema_w_attributes(class utility::tag::XMLSchemaDefinition &, const std::string &, const class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, const std::string &) –> void