scoring

Bindings for protocols::legacy_sewing::scoring namespace

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction

Bases: pybind11_object

add_scorer(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction, score_name: str, weight: float, scorer: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → None

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction::add_scorer(std::string, double, class std::shared_ptr<class protocols::legacy_sewing::scoring::LegacyAssemblyScorer>) –> void

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction &

get_all_scores(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → pyrosetta.rosetta.utility.vector1_std_pair_std_string_double_t

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction::get_all_scores(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> class utility::vector1<struct std::pair<std::string, double>, class std::allocator<struct std::pair<std::string, double> > >

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScoreFunction, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

return the weighted sum of all scorer scores

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScoreFunction::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyBlosumScorer

Bases: LegacyAssemblyScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyBlosumScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyBlosumScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyBlosumScorer

C++: protocols::legacy_sewing::scoring::LegacyBlosumScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyBlosumScorer &) –> class protocols::legacy_sewing::scoring::LegacyBlosumScorer &

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyBlosumScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyBlosumScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyCalciumMotifScorer

Bases: LegacyMotifScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &

dump_motif(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → None

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> void

full_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyCalciumMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::full_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

get_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, stub1: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss1: str, aa1: str, stub2: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss2: str, aa2: str) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(class numeric::xyzTransform<double>, char, char, class numeric::xyzTransform<double>, char, char) const –> double

get_stub(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, segments: pyrosetta.rosetta.utility.vector1_protocols_legacy_sewing_SewSegment, segment_num: int, resnum: int) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(const class utility::vector1<struct protocols::legacy_sewing::SewSegment, class std::allocator<struct protocols::legacy_sewing::SewSegment> > &, unsigned long, unsigned long) const –> class numeric::xyzTransform<double>

norm_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::norm_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyCalciumMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyClashScorer

Bases: LegacyAssemblyScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyClashScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyClashScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyClashScorer

C++: protocols::legacy_sewing::scoring::LegacyClashScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyClashScorer &) –> class protocols::legacy_sewing::scoring::LegacyClashScorer &

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyClashScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyClashScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyInterModelMotifScorer

Bases: LegacyMotifScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &

dump_motif(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → None

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> void

full_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyInterModelMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyInterModelMotifScorer::full_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

get_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, stub1: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss1: str, aa1: str, stub2: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss2: str, aa2: str) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(class numeric::xyzTransform<double>, char, char, class numeric::xyzTransform<double>, char, char) const –> double

get_stub(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, segments: pyrosetta.rosetta.utility.vector1_protocols_legacy_sewing_SewSegment, segment_num: int, resnum: int) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(const class utility::vector1<struct protocols::legacy_sewing::SewSegment, class std::allocator<struct protocols::legacy_sewing::SewSegment> > &, unsigned long, unsigned long) const –> class numeric::xyzTransform<double>

norm_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::norm_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyInterModelMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyInterModelMotifScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer

Bases: LegacyAssemblyScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &

dump_motif(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → None

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> void

full_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::full_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

get_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, stub1: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss1: str, aa1: str, stub2: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss2: str, aa2: str) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(class numeric::xyzTransform<double>, char, char, class numeric::xyzTransform<double>, char, char) const –> double

get_stub(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, segments: pyrosetta.rosetta.utility.vector1_protocols_legacy_sewing_SewSegment, segment_num: int, resnum: int) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(const class utility::vector1<struct protocols::legacy_sewing::SewSegment, class std::allocator<struct protocols::legacy_sewing::SewSegment> > &, unsigned long, unsigned long) const –> class numeric::xyzTransform<double>

norm_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::norm_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

class pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyPartnerMotifScorer

Bases: LegacyMotifScorer

assign(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer, : pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer) → pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyAssemblyScorer

C++: protocols::legacy_sewing::scoring::LegacyAssemblyScorer::operator=(const class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &) –> class protocols::legacy_sewing::scoring::LegacyAssemblyScorer &

dump_motif(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → None

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::dump_motif(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) const –> void

full_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::full_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

get_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, stub1: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss1: str, aa1: str, stub2: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss2: str, aa2: str) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(class numeric::xyzTransform<double>, char, char, class numeric::xyzTransform<double>, char, char) const –> double

get_stub(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, segments: pyrosetta.rosetta.utility.vector1_protocols_legacy_sewing_SewSegment, segment_num: int, resnum: int) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(const class utility::vector1<struct protocols::legacy_sewing::SewSegment, class std::allocator<struct protocols::legacy_sewing::SewSegment> > &, unsigned long, unsigned long) const –> class numeric::xyzTransform<double>

interface_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyPartnerMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyPartnerMotifScorer::interface_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

norm_motif_score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyMotifScorer::norm_motif_score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double

score(self: pyrosetta.rosetta.protocols.legacy_sewing.scoring.LegacyPartnerMotifScorer, assembly: pyrosetta.rosetta.protocols.legacy_sewing.Assembly) → float

C++: protocols::legacy_sewing::scoring::LegacyPartnerMotifScorer::score(class std::shared_ptr<const class protocols::legacy_sewing::Assembly>) –> double