movers

Bindings for protocols::fold_from_loops::movers namespace

class pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::operator=(const class protocols::fold_from_loops::movers::AlignByResidueSelectorMover &) –> class protocols::fold_from_loops::movers::AlignByResidueSelectorMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover) str

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

query_selector(*args, **kwargs)

Overloaded function.

  1. query_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, select: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::query_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

  1. query_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, select: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::query_selector(const class core::select::residue_selector::ResidueSelector &) –> void

reference_pose(*args, **kwargs)

Overloaded function.

  1. reference_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, ref: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::reference_pose(const class std::shared_ptr<class core::pose::Pose> &) –> void

  1. reference_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, ref: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::reference_pose(const class core::pose::Pose &) –> void

reference_selector(*args, **kwargs)

Overloaded function.

  1. reference_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, select: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::reference_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

  1. reference_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMover, select: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMover::reference_selector(const class core::select::residue_selector::ResidueSelector &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator::operator=(const class protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator &) –> class protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator) str

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.AlignByResidueSelectorMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::AlignByResidueSelectorMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

add_labels_as_remark(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::add_labels_as_remark(class core::pose::Pose &) const –> void

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::operator=(const class protocols::fold_from_loops::movers::DisplayPoseLabelsMover &) –> class protocols::fold_from_loops::movers::DisplayPoseLabelsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) str

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

movemap_factory(*args, **kwargs)

Overloaded function.

  1. movemap_factory(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) -> pyrosetta.rosetta.core.select.movemap.MoveMapFactory

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_factory() const –> class std::shared_ptr<class core::select::movemap::MoveMapFactory>

  1. movemap_factory(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pick: pyrosetta.rosetta.core.select.movemap.MoveMapFactory) -> None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_factory(class std::shared_ptr<class core::select::movemap::MoveMapFactory>) –> void

movemap_from_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pose: pyrosetta.rosetta.core.pose.Pose) pyrosetta.rosetta.core.kinematics.MoveMap

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_from_pose(const class core::pose::Pose &) const –> class std::shared_ptr<class core::kinematics::MoveMap>

static mover_name() str

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

tasks(*args, **kwargs)

Overloaded function.

  1. tasks(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) -> pyrosetta.rosetta.core.pack.task.TaskFactory

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::tasks() const –> class std::shared_ptr<class core::pack::task::TaskFactory>

  1. tasks(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pick: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::tasks(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

title_width(*args, **kwargs)

Overloaded function.

  1. title_width(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) -> int

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::title_width() const –> unsigned long

  1. title_width(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pick: int) -> None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::title_width(unsigned long) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_dssp(*args, **kwargs)

Overloaded function.

  1. use_dssp(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) -> bool

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::use_dssp() const –> bool

  1. use_dssp(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::use_dssp(bool) –> void

write(*args, **kwargs)

Overloaded function.

  1. write(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover) -> bool

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write() const –> bool

  1. write(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write(bool) –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator::operator=(const class protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator &) –> class protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator) str

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.DisplayPoseLabelsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::operator=(const class protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover &) –> class protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

from_remark(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, pick: bool) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::from_remark(const bool &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover) str

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

label(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, label: str) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::label(const std::string &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

residue_selector(*args, **kwargs)

Overloaded function.

  1. residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::residue_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

  1. residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::residue_selector(const class core::select::residue_selector::ResidueSelector &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

unlabel(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMover, label: str) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMover::unlabel(const std::string &) –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator::operator=(const class protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator &) –> class protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator) str

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.LabelPoseFromResidueSelectorMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::LabelPoseFromResidueSelectorMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::operator=(const class protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover &) –> class protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover) str

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator::operator=(const class protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator &) –> class protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator) str

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.MoveMapFactoryToNamedMoveMapMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::MoveMapFactoryToNamedMoveMapMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::operator=(const class protocols::fold_from_loops::movers::NubInitioLoopClosureMover &) –> class protocols::fold_from_loops::movers::NubInitioLoopClosureMover &

break_side(*args, **kwargs)

Overloaded function.

  1. break_side(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> int

break_side defines how many residues in each side of the chainbreak

are allowed to move (as long as they are not !FLEXIBLE+MOTIF labeled residues)

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side() const –> unsigned long

  1. break_side(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, value: float) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side(double) –> void

break_side_ramp(*args, **kwargs)

Overloaded function.

  1. break_side_ramp(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> bool

when set to true, in each unsuccesfull closure try, it allows one more

residue to move

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp() const –> bool

  1. break_side_ramp(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::break_side_ramp(bool) –> void

centroid(*args, **kwargs)

Overloaded function.

  1. centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> bool

if true, assume input is centroid, and so should be the output.

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid() const –> bool

  1. centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid(bool) –> void

centroid_scorefxn(*args, **kwargs)

Overloaded function.

  1. centroid_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

centroid_score is provided to the CCDclosure to close the loop.

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

  1. centroid_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::centroid_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> bool

if true, a part from repacking, also redesign the residues of the loop and around

following FFL rules.

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::design() const –> bool

  1. design(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::design(bool) –> void

fragments(*args, **kwargs)

Overloaded function.

  1. fragments(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> pyrosetta.rosetta.core.fragment.FragSet

fragments

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments() const –> class std::shared_ptr<class core::fragment::FragSet>

  1. fragments(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, frags: pyrosetta.rosetta.core.fragment.FragSet) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments(class std::shared_ptr<class core::fragment::FragSet>) –> void

fragments_id(*args, **kwargs)

Overloaded function.

  1. fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> str

id of the fragments loaded into the DataMap

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id() const –> std::string

  1. fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, name: str) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fragments_id(const std::string &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

fullatom_scorefxn(*args, **kwargs)

Overloaded function.

  1. fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

fullatom_score is used to pack sidechains after the closure

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fullatom_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

  1. fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::fullatom_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) str

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

label(*args, **kwargs)

Overloaded function.

  1. label(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> bool

if true, label the resiudes that have moved or been repacked during the Mover.

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::label() const –> bool

  1. label(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::label(bool) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

max_trials(*args, **kwargs)

Overloaded function.

  1. max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, choice: int) -> None

set how many times we try to close the loops before accepting we cannot

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::max_trials(unsigned long) –> void

  1. max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> int

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::max_trials() const –> unsigned long

static mover_name() str

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

trust(*args, **kwargs)

Overloaded function.

  1. trust(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover) -> bool

if true, trust the residue variants to locate chain breaks; otherwise use the FoldTree

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::trust() const –> bool

  1. trust(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMover, pick: bool) -> None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMover::trust(bool) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator::operator=(const class protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator &) –> class protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator) str

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.NubInitioLoopClosureMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::NubInitioLoopClosureMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::operator=(const class protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover &) –> class protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover) str

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_residue_selector(*args, **kwargs)

Overloaded function.

  1. set_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::set_residue_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

  1. set_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMover::set_residue_selector(const class core::select::residue_selector::ResidueSelector &) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator::operator=(const class protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator &) –> class protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator) str

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ReleaseConstraintFromResidueMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::ReleaseConstraintFromResidueMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::operator=(const class protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover &) –> class protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover) str

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

pdb_count(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMover, action: bool) None

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::pdb_count(bool) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator::operator=(const class protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator &) –> class protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator) str

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.ResidueLabelsToPymolSelectionMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::ResidueLabelsToPymolSelectionMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

Adds constraints generated by ConstraintGenerators to a pose

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::operator=(const class protocols::fold_from_loops::movers::SavePDBInfoMover &) –> class protocols::fold_from_loops::movers::SavePDBInfoMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover) str

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::SavePDBInfoMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator

C++: protocols::fold_from_loops::movers::SavePDBInfoMoverCreator::operator=(const class protocols::fold_from_loops::movers::SavePDBInfoMoverCreator &) –> class protocols::fold_from_loops::movers::SavePDBInfoMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::SavePDBInfoMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator) str

C++: protocols::fold_from_loops::movers::SavePDBInfoMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SavePDBInfoMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::SavePDBInfoMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply Mover

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::apply(class core::pose::Pose &) –> void

apply_without_merge(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, pose: pyrosetta.rosetta.core.pose.Pose) pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::apply_without_merge(const class core::pose::Pose &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, : pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::operator=(const class protocols::fold_from_loops::movers::SplitAndMixPoseMover &) –> class protocols::fold_from_loops::movers::SplitAndMixPoseMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

count_segments(*args, **kwargs)

Overloaded function.

  1. count_segments(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) -> int

Get Number of Segments

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::count_segments() const –> unsigned long

  1. count_segments(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, pose: pyrosetta.rosetta.core.pose.Pose) -> int

Calculate Number of Segments

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::count_segments(const class core::pose::Pose &) –> unsigned long

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

static default_exclude_consecutive() bool

Exclude Consecutive Default

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::default_exclude_consecutive() –> bool

static default_max_distance() float

MaxDistance Default

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::default_max_distance() –> double

static default_merge_chains() bool

Merge Chains Default

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::default_merge_chains() –> bool

static default_try_all_pairs() bool

Try All Pairs Default

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::default_try_all_pairs() –> bool

exclude_consecutive(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) bool

Exclude Consecutive Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::exclude_consecutive() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_global_i(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) int

GlobalI Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::get_global_i() const –> unsigned long

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) str

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

max_distance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) float

MaxDistance Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::max_distance() const –> double

merge_chains(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) bool

Merge Chains Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::merge_chains() const –> bool

static mover_name() str

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

order(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.utility.vector1_unsigned_long

Re-merge order Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::order() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.core.select.residue_selector.ResidueRanges

ResidueRanges Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::ranges() const –> class std::shared_ptr<class core::select::residue_selector::ResidueRanges>

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_order(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) None

Re-merge order reSet to empty

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::reset_order() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

ResidueSelector Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::residue_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_exclude_consecutive(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, exclude_consecutive: bool) None

If True, and try_all_pairs_ True, consecutive pairs are excluded from the list

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_exclude_consecutive(bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_max_distance(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, max_distance: float) None

If Set to a positive value, that is the max distance between SubPose1-Cterm and SubPose2-Nterm allowed to concatenate them

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_max_distance(double) –> void

set_merge_chains(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, merge: bool) None
Merge Chains Setter

If True, this will only work as long as the segments of the same chain are ordered together.

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_merge_chains(bool) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_order(*args, **kwargs)

Overloaded function.

  1. set_order(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, order: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

Re-merge order Setter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_order(class utility::vector1<unsigned long, class std::allocator<unsigned long> >) –> void

  1. set_order(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, order: str) -> None

Re-merge order Setter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_order(std::string) –> void

  1. set_order(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, max: int) -> None

Re-merge order Setter from 1 to max

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_order(unsigned long) –> void

set_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, ranges: pyrosetta.rosetta.core.select.residue_selector.ResidueRanges) None

ResidueRanges Setter (by doing this, it avoids applying the ResidueSelector)

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_ranges(const class std::shared_ptr<class core::select::residue_selector::ResidueRanges> &) –> void

set_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None

ResidueSelector Setter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_residue_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

set_try_all_pairs(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover, try_all_pairs: bool) None

If True, at each loop of -nstruct it will generate a new pose combining two different subposes.

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::set_try_all_pairs(bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

try_all_pairs(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMover) bool

Try All Pairs Getter

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMover::try_all_pairs() const –> bool

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

RosettaScripts factory for NubInitio.

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator::operator=(const class protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator &) –> class protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator) str

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.movers.SplitAndMixPoseMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::movers::SplitAndMixPoseMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void