fold_from_loops

Bindings for protocols::fold_from_loops namespace

class pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

angle_weight(*args, **kwargs)

Overloaded function.

  1. angle_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None

weight for angle constraints, to provide to the ab initio process

C++: protocols::fold_from_loops::NubInitioMover::angle_weight(double) –> void

  1. angle_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float

C++: protocols::fold_from_loops::NubInitioMover::angle_weight() const –> double

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pose: pyrosetta.rosetta.core.pose.Pose) None

Main application of the NubInitioMover

C++: protocols::fold_from_loops::NubInitioMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, : pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover

C++: protocols::fold_from_loops::NubInitioMover::operator=(const class protocols::fold_from_loops::NubInitioMover &) –> class protocols::fold_from_loops::NubInitioMover &

bb_movable_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects the residues that are TEMPLATE or FLEXIBLE from the DESIGN CHAIN.

C++: protocols::fold_from_loops::NubInitioMover::bb_movable_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

binder_weight(*args, **kwargs)

Overloaded function.

  1. binder_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None

weight for binder related score terms, to provide to the ab initio process

C++: protocols::fold_from_loops::NubInitioMover::binder_weight(double) –> void

  1. binder_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float

C++: protocols::fold_from_loops::NubInitioMover::binder_weight() const –> double

chi_movable_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects the residues that are TEMPLATE or COLDSPOT from the DESIGN CHAIN.

C++: protocols::fold_from_loops::NubInitioMover::chi_movable_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_motif_cst(*args, **kwargs)

Overloaded function.

  1. clear_motif_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when true, remove constraints transfered from the template into the inserted motif

C++: protocols::fold_from_loops::NubInitioMover::clear_motif_cst() const –> bool

  1. clear_motif_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::clear_motif_cst(bool) –> void

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::NubInitioMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

context_chain_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects ALL the chains NOT considered as DESIGN by the NubInitioMover instance.

C++: protocols::fold_from_loops::NubInitioMover::context_chain_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

correction_weights(*args, **kwargs)

Overloaded function.

  1. correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None

value automatically applied to weight to improve alpha/beta fold

C++: protocols::fold_from_loops::NubInitioMover::correction_weights(double) –> void

  1. correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float

C++: protocols::fold_from_loops::NubInitioMover::correction_weights() const –> double

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

cys_design_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects residues that are DISULFIDIZE from the DESIGN CHAIN.

C++: protocols::fold_from_loops::NubInitioMover::cys_design_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

if true, design the designable residues (TEMPLATE & COLDSPOT labels)

C++: protocols::fold_from_loops::NubInitioMover::design() const –> bool

  1. design(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::design(bool) –> void

design_chain_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects the chain considered as DESIGN by the NubInitioMover instance.

C++: protocols::fold_from_loops::NubInitioMover::design_chain_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

dihedral_weight(*args, **kwargs)

Overloaded function.

  1. dihedral_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None

weight for dihedral constraints, to provide to the ab initio process

C++: protocols::fold_from_loops::NubInitioMover::dihedral_weight(double) –> void

  1. dihedral_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float

C++: protocols::fold_from_loops::NubInitioMover::dihedral_weight() const –> double

disulfides_bb(*args, **kwargs)

Overloaded function.

  1. disulfides_bb(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when true, allow bb movements to try to repack the disulfides

C++: protocols::fold_from_loops::NubInitioMover::disulfides_bb() const –> bool

  1. disulfides_bb(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::disulfides_bb(bool) –> void

disulfides_side(*args, **kwargs)

Overloaded function.

  1. disulfides_side(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> int

if disulfides_bb is true, how many residues around CYS are allowed to move?

C++: protocols::fold_from_loops::NubInitioMover::disulfides_side() const –> unsigned long

  1. disulfides_side(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None

C++: protocols::fold_from_loops::NubInitioMover::disulfides_side(double) –> void

drop_unfolded_pose(*args, **kwargs)

Overloaded function.

  1. drop_unfolded_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

if true, stop after generating the unfolded pose (for show and debug)

C++: protocols::fold_from_loops::NubInitioMover::drop_unfolded_pose() const –> bool

  1. drop_unfolded_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::drop_unfolded_pose(bool) –> void

dump_centroid(*args, **kwargs)

Overloaded function.

  1. dump_centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

if true, generate silentfile with the centroid-level protein

C++: protocols::fold_from_loops::NubInitioMover::dump_centroid() const –> bool

  1. dump_centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::dump_centroid(bool) –> void

filter(*args, **kwargs)

Overloaded function.

  1. filter(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.protocols.filters.Filter

if given, define an alternative filter to RMSD

C++: protocols::fold_from_loops::NubInitioMover::filter() const –> class std::shared_ptr<class protocols::filters::Filter>

  1. filter(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: pyrosetta.rosetta.protocols.filters.Filter) -> None

C++: protocols::fold_from_loops::NubInitioMover::filter(class std::shared_ptr<class protocols::filters::Filter>) –> void

filter_scorefxn(*args, **kwargs)

Overloaded function.

  1. filter_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

score function to use on provided filter

C++: protocols::fold_from_loops::NubInitioMover::filter_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

  1. filter_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::fold_from_loops::NubInitioMover::filter_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

fragments_id(*args, **kwargs)

Overloaded function.

  1. fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str

for rosettascripts, id of the fragmentsets in the datamap

C++: protocols::fold_from_loops::NubInitioMover::fragments_id() const –> std::string

  1. fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, name: str) -> None

C++: protocols::fold_from_loops::NubInitioMover::fragments_id(const std::string &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::fold_from_loops::NubInitioMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

fullatom_scorefxn(*args, **kwargs)

Overloaded function.

  1. fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

score function to use on repacking after going back to full atom

C++: protocols::fold_from_loops::NubInitioMover::fullatom_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

  1. fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::fold_from_loops::NubInitioMover::fullatom_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) str

C++: protocols::fold_from_loops::NubInitioMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

max_trials(*args, **kwargs)

Overloaded function.

  1. max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, choice: int) -> None

how many times do we try to fold?

C++: protocols::fold_from_loops::NubInitioMover::max_trials(unsigned long) –> void

  1. max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> int

C++: protocols::fold_from_loops::NubInitioMover::max_trials() const –> unsigned long

static mover_name() str

C++: protocols::fold_from_loops::NubInitioMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

nub(*args, **kwargs)

Overloaded function.

  1. nub(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> protocols::fold_from_loops::utils::Nub

object that contains and processes the unfolded pose info

C++: protocols::fold_from_loops::NubInitioMover::nub() const –> class std::shared_ptr<class protocols::fold_from_loops::utils::Nub>

  1. nub(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, nub: protocols::fold_from_loops::utils::Nub) -> None

C++: protocols::fold_from_loops::NubInitioMover::nub(class std::shared_ptr<class protocols::fold_from_loops::utils::Nub>) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::fold_from_loops::NubInitioMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prefix(*args, **kwargs)

Overloaded function.

  1. prefix(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str

In rosettascripts, saves the user provided name.

C++: protocols::fold_from_loops::NubInitioMover::prefix() const –> std::string

  1. prefix(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, prefix: str) -> None

C++: protocols::fold_from_loops::NubInitioMover::prefix(const std::string &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::NubInitioMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

repack_disulfides(*args, **kwargs)

Overloaded function.

  1. repack_disulfides(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when true, try to repack disulfides

C++: protocols::fold_from_loops::NubInitioMover::repack_disulfides() const –> bool

  1. repack_disulfides(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::repack_disulfides(bool) –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

residue_type(*args, **kwargs)

Overloaded function.

  1. residue_type(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str

if given, design all designable residues to the provided one (TEMPLATE & COLDSPOT labels)

C++: protocols::fold_from_loops::NubInitioMover::residue_type() const –> std::string

  1. residue_type(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: str) -> None

C++: protocols::fold_from_loops::NubInitioMover::residue_type(std::string) –> void

rmsd_include_motif(*args, **kwargs)

Overloaded function.

  1. rmsd_include_motif(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when true, include the residues of the insertion in the RMSD evaluation (do only when

insertion sizes are the same)

C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_motif() const –> bool

  1. rmsd_include_motif(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_motif(bool) –> void

rmsd_include_unconstrained(*args, **kwargs)

Overloaded function.

  1. rmsd_include_unconstrained(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when false, do not use residues without constraints in the RMSD evaluation

C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_unconstrained() const –> bool

  1. rmsd_include_unconstrained(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_unconstrained(bool) –> void

rmsd_threshold(*args, **kwargs)

Overloaded function.

  1. rmsd_threshold(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float

limit of divergence allowed between the template structure and the ab initio output

C++: protocols::fold_from_loops::NubInitioMover::rmsd_threshold() const –> double

  1. rmsd_threshold(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, threshold: float) -> None

C++: protocols::fold_from_loops::NubInitioMover::rmsd_threshold(double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

sse(*args, **kwargs)

Overloaded function.

  1. sse(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str

if given, allows to define the secondary structure of the template (in case it comes for PeptideStubMover)

C++: protocols::fold_from_loops::NubInitioMover::sse() const –> std::string

  1. sse(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: str) -> None

C++: protocols::fold_from_loops::NubInitioMover::sse(std::string) –> void

template_insertion_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueRanges

Range of residues representing the INSERTION regions (checks that there is one)

C++: protocols::fold_from_loops::NubInitioMover::template_insertion_ranges() const –> class core::select::residue_selector::ResidueRanges

template_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.pose.Pose

Store the unmodified pose as provided by apply.

C++: protocols::fold_from_loops::NubInitioMover::template_pose() const –> class core::pose::Pose

template_selector(*args, **kwargs)

Overloaded function.

  1. template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::fold_from_loops::NubInitioMover::template_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

  1. template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::fold_from_loops::NubInitioMover::template_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_correction_weights(*args, **kwargs)

Overloaded function.

  1. use_correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

if true, apply the correction weights

C++: protocols::fold_from_loops::NubInitioMover::use_correction_weights() const –> bool

  1. use_correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::use_correction_weights(bool) –> void

use_cst(*args, **kwargs)

Overloaded function.

  1. use_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool

when true, use constraint guided ab initio

C++: protocols::fold_from_loops::NubInitioMover::use_cst() const –> bool

  1. use_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None

C++: protocols::fold_from_loops::NubInitioMover::use_cst(bool) –> void

used_template_ranges(*args, **kwargs)

Overloaded function.

  1. used_template_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueRanges

  2. used_template_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, terminals: bool) -> pyrosetta.rosetta.core.select.residue_selector.ResidueRanges

Range of residues kept from the TEMPLATE (checks that there is one)

If terminals, adds N and C-terminal empty ranges (0, 0) if there is a N or C-terminal insertion

C++: protocols::fold_from_loops::NubInitioMover::used_template_ranges(bool) const –> class core::select::residue_selector::ResidueRanges

used_template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

INVERTS the INSERTION selector in the REFERENCE TEMPLATE POSE.

C++: protocols::fold_from_loops::NubInitioMover::used_template_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

work_motif_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects the residues that are MOTIF from the DESIGN CHAIN.

C++: protocols::fold_from_loops::NubInitioMover::work_motif_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

work_template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

Selects the residues that are TEMPLATE from the DESIGN CHAIN.

C++: protocols::fold_from_loops::NubInitioMover::work_template_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

class pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

RosettaScripts factory for NubInitio.

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator

C++: protocols::fold_from_loops::NubInitioMoverCreator::operator=(const class protocols::fold_from_loops::NubInitioMoverCreator &) –> class protocols::fold_from_loops::NubInitioMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::fold_from_loops::NubInitioMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) str

C++: protocols::fold_from_loops::NubInitioMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::fold_from_loops::NubInitioMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void