fold_from_loops¶
Bindings for protocols::fold_from_loops namespace
- class pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover¶
Bases:
Mover
- angle_weight(*args, **kwargs)¶
Overloaded function.
angle_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None
weight for angle constraints, to provide to the ab initio process
C++: protocols::fold_from_loops::NubInitioMover::angle_weight(double) –> void
angle_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float
C++: protocols::fold_from_loops::NubInitioMover::angle_weight() const –> double
- apply(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pose: pyrosetta.rosetta.core.pose.Pose) None ¶
Main application of the NubInitioMover
C++: protocols::fold_from_loops::NubInitioMover::apply(class core::pose::Pose &) –> void
- assign(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, : pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover ¶
C++: protocols::fold_from_loops::NubInitioMover::operator=(const class protocols::fold_from_loops::NubInitioMover &) –> class protocols::fold_from_loops::NubInitioMover &
- bb_movable_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects the residues that are TEMPLATE or FLEXIBLE from the DESIGN CHAIN.
C++: protocols::fold_from_loops::NubInitioMover::bb_movable_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- binder_weight(*args, **kwargs)¶
Overloaded function.
binder_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None
weight for binder related score terms, to provide to the ab initio process
C++: protocols::fold_from_loops::NubInitioMover::binder_weight(double) –> void
binder_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float
C++: protocols::fold_from_loops::NubInitioMover::binder_weight() const –> double
- chi_movable_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects the residues that are TEMPLATE or COLDSPOT from the DESIGN CHAIN.
C++: protocols::fold_from_loops::NubInitioMover::chi_movable_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None ¶
Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.
clear_info is called by jd2 before calling apply
C++: protocols::moves::Mover::clear_info() –> void
- clear_motif_cst(*args, **kwargs)¶
Overloaded function.
clear_motif_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
when true, remove constraints transfered from the template into the inserted motif
C++: protocols::fold_from_loops::NubInitioMover::clear_motif_cst() const –> bool
clear_motif_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::clear_motif_cst(bool) –> void
- clone(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.moves.Mover ¶
required in the context of the parser/scripting scheme
C++: protocols::fold_from_loops::NubInitioMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>
- context_chain_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects ALL the chains NOT considered as DESIGN by the NubInitioMover instance.
C++: protocols::fold_from_loops::NubInitioMover::context_chain_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- correction_weights(*args, **kwargs)¶
Overloaded function.
correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None
value automatically applied to weight to improve alpha/beta fold
C++: protocols::fold_from_loops::NubInitioMover::correction_weights(double) –> void
correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float
C++: protocols::fold_from_loops::NubInitioMover::correction_weights() const –> double
- create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover ¶
C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>
- cys_design_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects residues that are DISULFIDIZE from the DESIGN CHAIN.
C++: protocols::fold_from_loops::NubInitioMover::cys_design_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- design(*args, **kwargs)¶
Overloaded function.
design(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
if true, design the designable residues (TEMPLATE & COLDSPOT labels)
C++: protocols::fold_from_loops::NubInitioMover::design() const –> bool
design(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::design(bool) –> void
- design_chain_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects the chain considered as DESIGN by the NubInitioMover instance.
C++: protocols::fold_from_loops::NubInitioMover::design_chain_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- dihedral_weight(*args, **kwargs)¶
Overloaded function.
dihedral_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None
weight for dihedral constraints, to provide to the ab initio process
C++: protocols::fold_from_loops::NubInitioMover::dihedral_weight(double) –> void
dihedral_weight(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float
C++: protocols::fold_from_loops::NubInitioMover::dihedral_weight() const –> double
- disulfides_bb(*args, **kwargs)¶
Overloaded function.
disulfides_bb(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
when true, allow bb movements to try to repack the disulfides
C++: protocols::fold_from_loops::NubInitioMover::disulfides_bb() const –> bool
disulfides_bb(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::disulfides_bb(bool) –> void
- disulfides_side(*args, **kwargs)¶
Overloaded function.
disulfides_side(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> int
if disulfides_bb is true, how many residues around CYS are allowed to move?
C++: protocols::fold_from_loops::NubInitioMover::disulfides_side() const –> unsigned long
disulfides_side(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, value: float) -> None
C++: protocols::fold_from_loops::NubInitioMover::disulfides_side(double) –> void
- drop_unfolded_pose(*args, **kwargs)¶
Overloaded function.
drop_unfolded_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
if true, stop after generating the unfolded pose (for show and debug)
C++: protocols::fold_from_loops::NubInitioMover::drop_unfolded_pose() const –> bool
drop_unfolded_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::drop_unfolded_pose(bool) –> void
- dump_centroid(*args, **kwargs)¶
Overloaded function.
dump_centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
if true, generate silentfile with the centroid-level protein
C++: protocols::fold_from_loops::NubInitioMover::dump_centroid() const –> bool
dump_centroid(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::dump_centroid(bool) –> void
- filter(*args, **kwargs)¶
Overloaded function.
filter(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.protocols.filters.Filter
if given, define an alternative filter to RMSD
C++: protocols::fold_from_loops::NubInitioMover::filter() const –> class std::shared_ptr<class protocols::filters::Filter>
filter(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: pyrosetta.rosetta.protocols.filters.Filter) -> None
C++: protocols::fold_from_loops::NubInitioMover::filter(class std::shared_ptr<class protocols::filters::Filter>) –> void
- filter_scorefxn(*args, **kwargs)¶
Overloaded function.
filter_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction
score function to use on provided filter
C++: protocols::fold_from_loops::NubInitioMover::filter_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>
filter_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None
C++: protocols::fold_from_loops::NubInitioMover::filter_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void
- fragments_id(*args, **kwargs)¶
Overloaded function.
fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str
for rosettascripts, id of the fragmentsets in the datamap
C++: protocols::fold_from_loops::NubInitioMover::fragments_id() const –> std::string
fragments_id(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, name: str) -> None
C++: protocols::fold_from_loops::NubInitioMover::fragments_id(const std::string &) –> void
- fresh_instance(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.protocols.moves.Mover ¶
required in the context of the parser/scripting scheme
C++: protocols::fold_from_loops::NubInitioMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>
- fullatom_scorefxn(*args, **kwargs)¶
Overloaded function.
fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction
score function to use on repacking after going back to full atom
C++: protocols::fold_from_loops::NubInitioMover::fullatom_scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>
fullatom_scorefxn(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None
C++: protocols::fold_from_loops::NubInitioMover::fullatom_scorefxn(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void
- get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose ¶
fpd
Mechanism by which a mover may return multiple output poses from a single input pose.
Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.
C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>
- get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob ¶
C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>
- get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str ¶
- A tag is a unique identifier used to identify structures produced
by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.
C++: protocols::moves::Mover::get_current_tag() const –> std::string
- get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>
- get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus ¶
returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.
C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus
- get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) str ¶
C++: protocols::fold_from_loops::NubInitioMover::get_name() const –> std::string
- get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>
- get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover ¶
C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>
- get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t ¶
C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>
- get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str ¶
C++: protocols::moves::Mover::get_type() const –> std::string
- info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t ¶
non-const accessor
C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &
- last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float ¶
C++: protocols::moves::Mover::last_proposal_density_ratio() –> double
- max_trials(*args, **kwargs)¶
Overloaded function.
max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, choice: int) -> None
how many times do we try to fold?
C++: protocols::fold_from_loops::NubInitioMover::max_trials(unsigned long) –> void
max_trials(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> int
C++: protocols::fold_from_loops::NubInitioMover::max_trials() const –> unsigned long
- static mover_name() str ¶
C++: protocols::fold_from_loops::NubInitioMover::mover_name() –> std::string
- static name() str ¶
C++: protocols::moves::Mover::name() –> std::string
- nub(*args, **kwargs)¶
Overloaded function.
nub(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> protocols::fold_from_loops::utils::Nub
object that contains and processes the unfolded pose info
C++: protocols::fold_from_loops::NubInitioMover::nub() const –> class std::shared_ptr<class protocols::fold_from_loops::utils::Nub>
nub(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, nub: protocols::fold_from_loops::utils::Nub) -> None
C++: protocols::fold_from_loops::NubInitioMover::nub(class std::shared_ptr<class protocols::fold_from_loops::utils::Nub>) –> void
- parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None ¶
parse XML tag (to use this Mover in Rosetta Scripts)
C++: protocols::fold_from_loops::NubInitioMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- prefix(*args, **kwargs)¶
Overloaded function.
prefix(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str
In rosettascripts, saves the user provided name.
C++: protocols::fold_from_loops::NubInitioMover::prefix() const –> std::string
prefix(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, prefix: str) -> None
C++: protocols::fold_from_loops::NubInitioMover::prefix(const std::string &) –> void
- provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.
C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: protocols::fold_from_loops::NubInitioMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- static register_options() None ¶
Overload this static method if you access options within the mover.
These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.
C++: protocols::moves::Mover::register_options() –> void
- reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool ¶
- Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on
each use.
C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool
- reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool ¶
- Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input
pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).
C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool
- repack_disulfides(*args, **kwargs)¶
Overloaded function.
repack_disulfides(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
when true, try to repack disulfides
C++: protocols::fold_from_loops::NubInitioMover::repack_disulfides() const –> bool
repack_disulfides(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::repack_disulfides(bool) –> void
- reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None ¶
resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.
C++: protocols::moves::Mover::reset_status() –> void
- residue_type(*args, **kwargs)¶
Overloaded function.
residue_type(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str
if given, design all designable residues to the provided one (TEMPLATE & COLDSPOT labels)
C++: protocols::fold_from_loops::NubInitioMover::residue_type() const –> std::string
residue_type(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: str) -> None
C++: protocols::fold_from_loops::NubInitioMover::residue_type(std::string) –> void
- rmsd_include_motif(*args, **kwargs)¶
Overloaded function.
rmsd_include_motif(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
- when true, include the residues of the insertion in the RMSD evaluation (do only when
insertion sizes are the same)
C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_motif() const –> bool
rmsd_include_motif(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_motif(bool) –> void
- rmsd_include_unconstrained(*args, **kwargs)¶
Overloaded function.
rmsd_include_unconstrained(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
when false, do not use residues without constraints in the RMSD evaluation
C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_unconstrained() const –> bool
rmsd_include_unconstrained(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::rmsd_include_unconstrained(bool) –> void
- rmsd_threshold(*args, **kwargs)¶
Overloaded function.
rmsd_threshold(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> float
limit of divergence allowed between the template structure and the ab initio output
C++: protocols::fold_from_loops::NubInitioMover::rmsd_threshold() const –> double
rmsd_threshold(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, threshold: float) -> None
C++: protocols::fold_from_loops::NubInitioMover::rmsd_threshold(double) –> void
- set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None ¶
C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void
- set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None ¶
C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void
- set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None ¶
setter for poses contained for rms
C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
- set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None ¶
setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe
C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void
- set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None ¶
Set the ‘type’ string
C++: protocols::moves::Mover::set_type(const std::string &) –> void
- show(*args, **kwargs)¶
Overloaded function.
show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None
Outputs details about the Mover, including current settings.
C++: protocols::moves::Mover::show(std::ostream &) const –> void
- sse(*args, **kwargs)¶
Overloaded function.
sse(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> str
if given, allows to define the secondary structure of the template (in case it comes for PeptideStubMover)
C++: protocols::fold_from_loops::NubInitioMover::sse() const –> std::string
sse(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: str) -> None
C++: protocols::fold_from_loops::NubInitioMover::sse(std::string) –> void
- template_insertion_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueRanges ¶
Range of residues representing the INSERTION regions (checks that there is one)
C++: protocols::fold_from_loops::NubInitioMover::template_insertion_ranges() const –> class core::select::residue_selector::ResidueRanges
- template_pose(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.pose.Pose ¶
Store the unmodified pose as provided by apply.
C++: protocols::fold_from_loops::NubInitioMover::template_pose() const –> class core::pose::Pose
- template_selector(*args, **kwargs)¶
Overloaded function.
template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector
C++: protocols::fold_from_loops::NubInitioMover::template_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>
template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None
C++: protocols::fold_from_loops::NubInitioMover::template_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void
- test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None ¶
- : Unit test support function. Apply one move to a given pose.
Allows extra test specific functions to be called before applying
C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void
- type(*args, **kwargs)¶
Overloaded function.
type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None
Set the ‘type’ string
C++: protocols::moves::Mover::type(const std::string &) –> void
type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str
Get the set ‘type’ string
C++: protocols::moves::Mover::type() const –> const std::string &
- use_correction_weights(*args, **kwargs)¶
Overloaded function.
use_correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
if true, apply the correction weights
C++: protocols::fold_from_loops::NubInitioMover::use_correction_weights() const –> bool
use_correction_weights(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::use_correction_weights(bool) –> void
- use_cst(*args, **kwargs)¶
Overloaded function.
use_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> bool
when true, use constraint guided ab initio
C++: protocols::fold_from_loops::NubInitioMover::use_cst() const –> bool
use_cst(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, pick: bool) -> None
C++: protocols::fold_from_loops::NubInitioMover::use_cst(bool) –> void
- used_template_ranges(*args, **kwargs)¶
Overloaded function.
used_template_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueRanges
used_template_ranges(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover, terminals: bool) -> pyrosetta.rosetta.core.select.residue_selector.ResidueRanges
- Range of residues kept from the TEMPLATE (checks that there is one)
If terminals, adds N and C-terminal empty ranges (0, 0) if there is a N or C-terminal insertion
C++: protocols::fold_from_loops::NubInitioMover::used_template_ranges(bool) const –> class core::select::residue_selector::ResidueRanges
- used_template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
INVERTS the INSERTION selector in the REFERENCE TEMPLATE POSE.
C++: protocols::fold_from_loops::NubInitioMover::used_template_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- work_motif_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects the residues that are MOTIF from the DESIGN CHAIN.
C++: protocols::fold_from_loops::NubInitioMover::work_motif_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- work_template_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMover) pyrosetta.rosetta.core.select.residue_selector.ResidueSelector ¶
Selects the residues that are TEMPLATE from the DESIGN CHAIN.
C++: protocols::fold_from_loops::NubInitioMover::work_template_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>
- class pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator¶
Bases:
MoverCreator
RosettaScripts factory for NubInitio.
- assign(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator, : pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator ¶
C++: protocols::fold_from_loops::NubInitioMoverCreator::operator=(const class protocols::fold_from_loops::NubInitioMoverCreator &) –> class protocols::fold_from_loops::NubInitioMoverCreator &
- create_mover(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) pyrosetta.rosetta.protocols.moves.Mover ¶
C++: protocols::fold_from_loops::NubInitioMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>
- keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.NubInitioMoverCreator) str ¶
C++: protocols::fold_from_loops::NubInitioMoverCreator::keyname() const –> std::string