claims¶

Bindings for protocols::environment::claims namespace

class pyrosetta.rosetta.protocols.environment.claims.ClaimStrength¶

Bases: pybind11_object

CAN_CONTROL = <PrioSubtype.CAN_CONTROL: 1>¶

DOES_NOT_CONTROL = <PrioSubtype.DOES_NOT_CONTROL: 0>¶

EXCLUSIVE = <PrioSubtype.EXCLUSIVE: 3>¶

MUST_CONTROL = <PrioSubtype.MUST_CONTROL: 2>¶

class PrioSubtype¶

Bases: pybind11_object

Members:

CAN_CONTROL = <PrioSubtype.CAN_CONTROL: 1>¶

DOES_NOT_CONTROL = <PrioSubtype.DOES_NOT_CONTROL: 0>¶

EXCLUSIVE = <PrioSubtype.EXCLUSIVE: 3>¶

MUST_CONTROL = <PrioSubtype.MUST_CONTROL: 2>¶

property name¶

property value¶

assign(self: pyrosetta.rosetta.protocols.environment.claims.ClaimStrength, : pyrosetta.rosetta.protocols.environment.claims.ClaimStrength) → pyrosetta.rosetta.protocols.environment.claims.ClaimStrength¶: C++: protocols::environment::claims::ClaimStrength::operator=(const class protocols::environment::claims::ClaimStrength &) –> class protocols::environment::claims::ClaimStrength &

subprio(self: pyrosetta.rosetta.protocols.environment.claims.ClaimStrength) → int¶: C++: protocols::environment::claims::ClaimStrength::subprio() const –> unsigned long

subtype(self: pyrosetta.rosetta.protocols.environment.claims.ClaimStrength) → pyrosetta.rosetta.protocols.environment.claims.ClaimStrength.PrioSubtype¶: C++: protocols::environment::claims::ClaimStrength::subtype() const –> enum protocols::environment::claims::ClaimStrength::PrioSubtype

class pyrosetta.rosetta.protocols.environment.claims.ControlStrength¶

Bases: pybind11_object

Members:

CAN_CONTROL = <ControlStrength.CAN_CONTROL: 1>¶

DOES_NOT_CONTROL = <ControlStrength.DOES_NOT_CONTROL: 0>¶

EXCLUSIVE = <ControlStrength.EXCLUSIVE: 3>¶

MUST_CONTROL = <ControlStrength.MUST_CONTROL: 2>¶

property name¶

property value¶

class pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim¶

Bases: EnvClaim

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim, : pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim) → pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim¶: C++: protocols::environment::claims::CutBiasClaim::operator=(const class protocols::environment::claims::CutBiasClaim &) –> class protocols::environment::claims::CutBiasClaim &

static class_name() → str¶: C++: protocols::environment::claims::CutBiasClaim::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::CutBiasClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::CutBiasClaim::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::CutBiasClaim::show(std::ostream &) const –> void

type(self: pyrosetta.rosetta.protocols.environment.claims.CutBiasClaim) → str¶: C++: protocols::environment::claims::CutBiasClaim::type() const –> std::string

class pyrosetta.rosetta.protocols.environment.claims.CutBiasElement¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.environment.claims.CutBiasElement, : pyrosetta.rosetta.protocols.environment.claims.CutBiasElement) → pyrosetta.rosetta.protocols.environment.claims.CutBiasElement¶: C++: protocols::environment::claims::CutBiasElement::operator=(const struct protocols::environment::claims::CutBiasElement &) –> struct protocols::environment::claims::CutBiasElement &

property bias¶

property p¶

class pyrosetta.rosetta.protocols.environment.claims.CutElement¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.environment.claims.CutElement, : pyrosetta.rosetta.protocols.environment.claims.CutElement) → pyrosetta.rosetta.protocols.environment.claims.CutElement¶: C++: protocols::environment::claims::CutElement::operator=(const struct protocols::environment::claims::CutElement &) –> struct protocols::environment::claims::CutElement &

property p¶

class pyrosetta.rosetta.protocols.environment.claims.DOFElement¶

Bases: pybind11_object

property c_str¶

property i_str¶

property id¶

class pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

Bases: pybind11_object

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::EnvClaim::operator=(const class protocols::environment::claims::EnvClaim &) –> class protocols::environment::claims::EnvClaim &

clone(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::EnvClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::EnvClaim::show(std::ostream &) const –> void

type(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → str¶: C++: protocols::environment::claims::EnvClaim::type() const –> std::string

class pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector¶

Bases: ResidueSelector

add_position(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector, p: pyrosetta.rosetta.core.environment.LocalPosition) → None¶: C++: protocols::environment::claims::EnvLabelSelector::add_position(const class core::environment::LocalPosition &) –> void

apply(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶: C++: protocols::environment::claims::EnvLabelSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector, : pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector) → pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector¶: C++: protocols::environment::claims::EnvLabelSelector::operator=(const class protocols::environment::claims::EnvLabelSelector &) –> class protocols::environment::claims::EnvLabelSelector &

static class_name() → str¶: C++: protocols::environment::claims::EnvLabelSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

C++: protocols::environment::claims::EnvLabelSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector) → str¶: C++: protocols::environment::claims::EnvLabelSelector::get_name() const –> std::string

local_positions(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_environment_LocalPosition_t¶: C++: protocols::environment::claims::EnvLabelSelector::local_positions() const –> const class utility::vector1<class std::shared_ptr<class core::environment::LocalPosition>, class std::allocator<class std::shared_ptr<class core::environment::LocalPosition> > > &

parse_my_tag(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::environment::claims::EnvLabelSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by residue selectors wishing to provide citation information.

C++: core::select::residue_selector::ResidueSelector::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

selection_positions(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long¶

Calls apply and returns the Rosetta numbering corresponding to the selected residues

C++: core::select::residue_selector::ResidueSelector::selection_positions(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

set_local_positions(self: pyrosetta.rosetta.protocols.environment.claims.EnvLabelSelector, : pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_environment_LocalPosition_t) → None¶: C++: protocols::environment::claims::EnvLabelSelector::set_local_positions(const class utility::vector1<class std::shared_ptr<class core::environment::LocalPosition>, class std::allocator<class std::shared_ptr<class core::environment::LocalPosition> > > &) –> void

class pyrosetta.rosetta.protocols.environment.claims.JumpClaim¶

Bases: EnvClaim

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, : pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → pyrosetta.rosetta.protocols.environment.claims.JumpClaim¶: C++: protocols::environment::claims::JumpClaim::operator=(const class protocols::environment::claims::JumpClaim &) –> class protocols::environment::claims::JumpClaim &

atoms(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → Tuple[str, str]¶: C++: protocols::environment::claims::JumpClaim::atoms() const –> const struct std::pair<std::string, std::string > &

static class_name() → str¶: C++: protocols::environment::claims::JumpClaim::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::JumpClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

create_vrt_if_necessary(*args, **kwargs)¶

Overloaded function.

create_vrt_if_necessary(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, setting: bool) -> None

C++: protocols::environment::claims::JumpClaim::create_vrt_if_necessary(bool) –> void

create_vrt_if_necessary(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, setting_p1: bool, setting_p2: bool) -> None

configure this JumpClaim to create a virtual residue to be the jump point if label of the

this behavior for pos1()

this behavior for pos2()

C++: protocols::environment::claims::JumpClaim::create_vrt_if_necessary(bool, bool) –> void

cut(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, : pyrosetta.rosetta.core.environment.LocalPosition) → None¶: C++: protocols::environment::claims::JumpClaim::cut(const class core::environment::LocalPosition &) –> void

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

label(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → str¶: C++: protocols::environment::claims::JumpClaim::label() const –> const std::string &

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

physical(*args, **kwargs)¶

Overloaded function.

physical(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) -> bool

C++: protocols::environment::claims::JumpClaim::physical() const –> bool

physical(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, setting: bool) -> None

C++: protocols::environment::claims::JumpClaim::physical(bool) –> void

pos1(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → pyrosetta.rosetta.core.environment.LocalPosition¶: C++: protocols::environment::claims::JumpClaim::pos1() const –> const class core::environment::LocalPosition &

pos2(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → pyrosetta.rosetta.core.environment.LocalPosition¶: C++: protocols::environment::claims::JumpClaim::pos2() const –> const class core::environment::LocalPosition &

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::JumpClaim::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_atoms(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, a1: str, a2: str) → None¶

set the two atom names to use as the start and beginning of the jump. Both must be set simultaneously: because the FoldTree requires this.

C++: protocols::environment::claims::JumpClaim::set_atoms(const std::string &, const std::string &) –> void

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::JumpClaim::show(std::ostream &) const –> void

strength(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, cstr: pyrosetta.rosetta.protocols.environment.claims.ControlStrength, istr: pyrosetta.rosetta.protocols.environment.claims.ControlStrength) → None¶: C++: protocols::environment::claims::JumpClaim::strength(const enum protocols::environment::claims::ControlStrength &, const enum protocols::environment::claims::ControlStrength &) –> void

stubs_intra_residue(*args, **kwargs)¶

Overloaded function.

stubs_intra_residue(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim, setting: bool) -> None

C++: protocols::environment::claims::JumpClaim::stubs_intra_residue(bool) –> void

stubs_intra_residue(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) -> bool

C++: protocols::environment::claims::JumpClaim::stubs_intra_residue() const –> bool

type(self: pyrosetta.rosetta.protocols.environment.claims.JumpClaim) → str¶: C++: protocols::environment::claims::JumpClaim::type() const –> std::string

class pyrosetta.rosetta.protocols.environment.claims.JumpElement¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.environment.claims.JumpElement, : pyrosetta.rosetta.protocols.environment.claims.JumpElement) → pyrosetta.rosetta.protocols.environment.claims.JumpElement¶: C++: protocols::environment::claims::JumpElement::operator=(const struct protocols::environment::claims::JumpElement &) –> struct protocols::environment::claims::JumpElement &

property atom1¶

property atom2¶

property force_stub_intra_residue¶

property has_physical_cut¶

property label¶

property p1¶

property p2¶

class pyrosetta.rosetta.protocols.environment.claims.ResidueElement¶

Bases: pybind11_object

at the moment, this only makes virtual residues, but could be modified to hold on to the name of the residue that should be created so that you could (for example) add a carbohydrate or ligand with this system.

property allow_duplicates¶

assign(self: pyrosetta.rosetta.protocols.environment.claims.ResidueElement, : pyrosetta.rosetta.protocols.environment.claims.ResidueElement) → pyrosetta.rosetta.protocols.environment.claims.ResidueElement¶: C++: protocols::environment::claims::ResidueElement::operator=(const struct protocols::environment::claims::ResidueElement &) –> struct protocols::environment::claims::ResidueElement &

property label¶

class pyrosetta.rosetta.protocols.environment.claims.TorsionClaim¶

Bases: EnvClaim

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim, : pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → pyrosetta.rosetta.protocols.environment.claims.TorsionClaim¶: C++: protocols::environment::claims::TorsionClaim::operator=(const class protocols::environment::claims::TorsionClaim &) –> class protocols::environment::claims::TorsionClaim &

claim_backbone(*args, **kwargs)¶

Overloaded function.

claim_backbone(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim, in: bool) -> None

C++: protocols::environment::claims::TorsionClaim::claim_backbone(bool) –> void

claim_backbone(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) -> bool

C++: protocols::environment::claims::TorsionClaim::claim_backbone() const –> bool

claim_sidechain(*args, **kwargs)¶

Overloaded function.

claim_sidechain(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim, in: bool) -> None

C++: protocols::environment::claims::TorsionClaim::claim_sidechain(bool) –> void

claim_sidechain(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) -> bool

C++: protocols::environment::claims::TorsionClaim::claim_sidechain() const –> bool

static class_name() → str¶: C++: protocols::environment::claims::TorsionClaim::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::TorsionClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

ctrl_strength(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → pyrosetta.rosetta.protocols.environment.claims.ControlStrength¶: C++: protocols::environment::claims::TorsionClaim::ctrl_strength() const –> const enum protocols::environment::claims::ControlStrength &

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

init_strength(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → pyrosetta.rosetta.protocols.environment.claims.ControlStrength¶: C++: protocols::environment::claims::TorsionClaim::init_strength() const –> const enum protocols::environment::claims::ControlStrength &

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::TorsionClaim::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

selector(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::environment::claims::TorsionClaim::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::TorsionClaim::show(std::ostream &) const –> void

strength(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim, control_strength: pyrosetta.rosetta.protocols.environment.claims.ControlStrength, initialization_strength: pyrosetta.rosetta.protocols.environment.claims.ControlStrength) → None¶

set the initialization and control strength of the TorsionClaim.

C++: protocols::environment::claims::TorsionClaim::strength(const enum protocols::environment::claims::ControlStrength &, const enum protocols::environment::claims::ControlStrength &) –> void

type(self: pyrosetta.rosetta.protocols.environment.claims.TorsionClaim) → str¶: C++: protocols::environment::claims::TorsionClaim::type() const –> std::string

class pyrosetta.rosetta.protocols.environment.claims.VirtResClaim¶

Bases: EnvClaim

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim, : pyrosetta.rosetta.protocols.environment.claims.VirtResClaim) → pyrosetta.rosetta.protocols.environment.claims.VirtResClaim¶: C++: protocols::environment::claims::VirtResClaim::operator=(const class protocols::environment::claims::VirtResClaim &) –> class protocols::environment::claims::VirtResClaim &

static class_name() → str¶: C++: protocols::environment::claims::VirtResClaim::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::VirtResClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

jump(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim) → pyrosetta.rosetta.protocols.environment.claims.JumpClaim¶: C++: protocols::environment::claims::VirtResClaim::jump() –> class protocols::environment::claims::JumpClaim &

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::VirtResClaim::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::VirtResClaim::show(std::ostream &) const –> void

strength(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim, cstr: pyrosetta.rosetta.protocols.environment.claims.ControlStrength, istr: pyrosetta.rosetta.protocols.environment.claims.ControlStrength) → None¶: C++: protocols::environment::claims::VirtResClaim::strength(const enum protocols::environment::claims::ControlStrength &, const enum protocols::environment::claims::ControlStrength &) –> void

type(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim) → str¶: C++: protocols::environment::claims::VirtResClaim::type() const –> std::string

vrt_label(self: pyrosetta.rosetta.protocols.environment.claims.VirtResClaim) → str¶: C++: protocols::environment::claims::VirtResClaim::vrt_label() const –> const std::string &

class pyrosetta.rosetta.protocols.environment.claims.XYZClaim¶

Bases: EnvClaim

annotate(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.environment.SequenceAnnotation) → None¶

allow the claim to use any internally queued ResidueSelectors to create sequence annotations.

C++: protocols::environment::claims::EnvClaim::annotate(const class core::pose::Pose &, class std::shared_ptr<class core::environment::SequenceAnnotation>) const –> void

assign(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim, : pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → pyrosetta.rosetta.protocols.environment.claims.XYZClaim¶: C++: protocols::environment::claims::XYZClaim::operator=(const class protocols::environment::claims::XYZClaim &) –> class protocols::environment::claims::XYZClaim &

static class_name() → str¶: C++: protocols::environment::claims::XYZClaim::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶: C++: protocols::environment::claims::XYZClaim::clone() const –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

ctrl_strength(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → pyrosetta.rosetta.protocols.environment.claims.ControlStrength¶: C++: protocols::environment::claims::XYZClaim::ctrl_strength() const –> const enum protocols::environment::claims::ControlStrength &

static define_envclaim_schema_group(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::EnvClaim::define_envclaim_schema_group(class utility::tag::XMLSchemaDefinition &) –> void

static envclaim_ct_namer(: str) → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_ct_namer(std::string) –> std::string

static envclaim_group_name() → str¶: C++: protocols::environment::claims::EnvClaim::envclaim_group_name() –> std::string

init_strength(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → pyrosetta.rosetta.protocols.environment.claims.ControlStrength¶: C++: protocols::environment::claims::XYZClaim::init_strength() const –> const enum protocols::environment::claims::ControlStrength &

static is_claim(name: str) → bool¶: C++: protocols::environment::claims::EnvClaim::is_claim(const std::string &) –> bool

static make_claim(name: str, owner: pyrosetta.rosetta.protocols.environment.ClientMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → pyrosetta.rosetta.protocols.environment.claims.EnvClaim¶

factory method for claims.

C++: protocols::environment::claims::EnvClaim::make_claim(const std::string &, class std::shared_ptr<class protocols::environment::ClientMover>, class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> class std::shared_ptr<class protocols::environment::claims::EnvClaim>

owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim) → pyrosetta.rosetta.protocols.environment.ClientMover¶

A clone used by the EnvClaimFactory to instantiate new EnvClaims using an XML tag.

C++: protocols::environment::claims::EnvClaim::owner() const –> class std::shared_ptr<class protocols::environment::ClientMover>

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::environment::claims::XYZClaim::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

relative(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → bool¶: C++: protocols::environment::claims::XYZClaim::relative() const –> bool

selector(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::environment::claims::XYZClaim::selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

set_owner(self: pyrosetta.rosetta.protocols.environment.claims.EnvClaim, owner: pyrosetta.rosetta.protocols.environment.ClientMover) → None¶: C++: protocols::environment::claims::EnvClaim::set_owner(class std::shared_ptr<class protocols::environment::ClientMover>) –> void

set_relative(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim, s: bool) → None¶: C++: protocols::environment::claims::XYZClaim::set_relative(bool) –> void

show(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim, os: pyrosetta.rosetta.std.ostream) → None¶: C++: protocols::environment::claims::XYZClaim::show(std::ostream &) const –> void

strength(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim, control: pyrosetta.rosetta.protocols.environment.claims.ControlStrength, initialization: pyrosetta.rosetta.protocols.environment.claims.ControlStrength) → None¶: C++: protocols::environment::claims::XYZClaim::strength(const enum protocols::environment::claims::ControlStrength &, const enum protocols::environment::claims::ControlStrength &) –> void

type(self: pyrosetta.rosetta.protocols.environment.claims.XYZClaim) → str¶: C++: protocols::environment::claims::XYZClaim::type() const –> std::string