chemically_conjugated_docking¶

Bindings for protocols::chemically_conjugated_docking namespace

class pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover¶

Bases: Mover

A mover typically used for binding ubiquitin to a substrate protein.

analyze_and_filter(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

applies filters and stores torsion angles near LYX bond

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::analyze_and_filter(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

Apply the mover

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::operator=(const class protocols::moves::Mover &) –> class protocols::moves::Mover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.protocols.moves.Mover¶

required in the context of the parser/scripting scheme

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.protocols.moves.Mover¶

required in the context of the parser/scripting scheme

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_GTPase_lys(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → int¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_GTPase_lys() const –> unsigned long

get_IAM(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.protocols.analysis.InterfaceAnalyzerMover¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_IAM() const –> class std::shared_ptr<class protocols::analysis::InterfaceAnalyzerMover>

get_InterfaceSasaDefinition(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → str¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_InterfaceSasaDefinition() const –> const std::string &

get_SASAfilter(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → float¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_SASAfilter() const –> double

get_UBQpdb(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → str¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_UBQpdb() const –> const std::string &

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_amide_mm(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.core.kinematics.MoveMap¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_amide_mm() const –> class std::shared_ptr<class core::kinematics::MoveMap>

get_atom_IDs(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.utility.vector1_core_id_AtomID¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_atom_IDs() const –> const class utility::vector1<class core::id::AtomID, class std::allocator<class core::id::AtomID> > &

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_extra_bodies(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → bool¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_extra_bodies() const –> bool

get_extra_bodies_chains(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_extra_bodies_chains() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

get_fullatom_scorefunction(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.core.scoring.ScoreFunction¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_fullatom_scorefunction() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_loop(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.protocols.loops.Loop¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_loop() const –> const class protocols::loops::Loop &

get_n_tail_res(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → int¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_n_tail_res() const –> unsigned long

get_name(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → str¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_scorefilter(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → float¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_scorefilter() const –> double

get_selector(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_starting_pose(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_starting_pose() const –> const class core::pose::Pose &

get_task_factory(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) → pyrosetta.rosetta.core.pack.task.TaskFactory¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::get_task_factory() const –> class std::shared_ptr<class core::pack::task::TaskFactory>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

initialize(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, GTPase: pyrosetta.rosetta.core.pose.Pose) → None¶

sets up the pose with UBQ and GTPase

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::initialize(class core::pose::Pose &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

make_index_selector(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, index: int) → None¶

makes an internal ResidueIndexSelector given a residue index on the substrate.

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::make_index_selector(unsigned long) –> void

static mover_name() → str¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_GTPase_lys(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, lys: int) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_GTPase_lys(const unsigned long) –> void

set_IAM(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, iam: pyrosetta.rosetta.protocols.analysis.InterfaceAnalyzerMover) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_IAM(const class std::shared_ptr<class protocols::analysis::InterfaceAnalyzerMover> &) –> void

set_SASAfilter(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, minSASA: float) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_SASAfilter(const double) –> void

set_UBQpdb(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, ubqFile: str) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_UBQpdb(const std::string &) –> void

set_amide_mm(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, mm: pyrosetta.rosetta.core.kinematics.MoveMap) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_amide_mm(const class std::shared_ptr<class core::kinematics::MoveMap> &) –> void

set_atom_IDs(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, ids: pyrosetta.rosetta.utility.vector1_core_id_AtomID) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_atom_IDs(const class utility::vector1<class core::id::AtomID, class std::allocator<class core::id::AtomID> > &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_extra_bodies(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, hasExtra: bool) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_extra_bodies(const bool) –> void

set_extra_bodies_chains(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, chains: pyrosetta.rosetta.utility.vector1_unsigned_long) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_extra_bodies_chains(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_fullatom_scorefunction(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, sfxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_fullatom_scorefunction(const class std::shared_ptr<class core::scoring::ScoreFunction> &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_loop(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, loop: pyrosetta.rosetta.protocols.loops.Loop) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_loop(const class protocols::loops::Loop &) –> void

set_n_tail_res(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, numTails: int) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_n_tail_res(const unsigned long) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_scorefilter(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, maxScore: float) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_scorefilter(const double) –> void

set_selector(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, select: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_selector(const class std::shared_ptr<const class core::select::residue_selector::ResidueSelector> &) –> void

set_task_factory(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, tasks: pyrosetta.rosetta.core.pack.task.TaskFactory) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::set_task_factory(const class std::shared_ptr<class core::pack::task::TaskFactory> &) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover) -> None
show(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMover, output: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator, : pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator) → pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator::operator=(const class protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator &) –> class protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator) → str¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.chemically_conjugated_docking.UBQ_GTPaseMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::chemically_conjugated_docking::UBQ_GTPaseMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

pyrosetta.rosetta.protocols.chemically_conjugated_docking.add_extra_bodies(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long¶

/////////////////////////extra bodies/////////////////////////////////////////////////

The purpose of this code is to allow for static extra things

in the system; for its original incarnations, to allow for a RING domain to occlude its site on E2 and a GAP (+MG +GDP) to occlude ras

C++: protocols::chemically_conjugated_docking::add_extra_bodies(class core::pose::Pose &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.chemically_conjugated_docking.create_extra_output(pose: pyrosetta.rosetta.core.pose.Pose, ubiquitin: bool, GTPase_target: int) → None¶

This function is specific to the original system for which this code was written - if you are not trying to duplicate the initial results you should remove it!

C++: protocols::chemically_conjugated_docking::create_extra_output(class core::pose::Pose &, const bool, const unsigned long) –> void

pyrosetta.rosetta.protocols.chemically_conjugated_docking.pack_extra_bodies(extra_bodies_chains: pyrosetta.rosetta.utility.vector1_unsigned_long, pose: pyrosetta.rosetta.core.pose.Pose, region: pyrosetta.rosetta.std.set_unsigned_long_t) → None¶: C++: protocols::chemically_conjugated_docking::pack_extra_bodies(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class core::pose::Pose &, class std::set<unsigned long, struct std::less<unsigned long>, class std::allocator<unsigned long> > &) –> void

pyrosetta.rosetta.protocols.chemically_conjugated_docking.ubq_ras_distance(pose: pyrosetta.rosetta.core.pose.Pose) → None¶

do ubiquitin-ras pair distance measurement and reporting

C++: protocols::chemically_conjugated_docking::ubq_ras_distance(class core::pose::Pose &) –> void

pyrosetta.rosetta.protocols.chemically_conjugated_docking.ubq_ras_rotation_angle(pose: pyrosetta.rosetta.core.pose.Pose, job_me: protocols::jd2::Job, GTPase_target: int, ubiquitin: bool) → None¶: C++: protocols::chemically_conjugated_docking::ubq_ras_rotation_angle(const class core::pose::Pose &, class std::shared_ptr<class protocols::jd2::Job>, const unsigned long, const bool) –> void