branch_angle

Bindings for protocols::branch_angle namespace

class pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer

Bases: pybind11_builtins.pybind11_object

bond_angle_residue_type_param_set(*args, **kwargs)

Overloaded function.

  1. bond_angle_residue_type_param_set(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> pyrosetta.rosetta.core.scoring.mm.MMBondAngleResidueTypeParamSet

C++: protocols::branch_angle::BranchAngleOptimizer::bond_angle_residue_type_param_set() –> class std::shared_ptr<class core::scoring::mm::MMBondAngleResidueTypeParamSet>

  1. bond_angle_residue_type_param_set(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, param_set: pyrosetta.rosetta.core.scoring.mm.MMBondAngleResidueTypeParamSet) -> None

set input MMBondAngleResidueTypeParamSet, sharing with the input

C++: protocols::branch_angle::BranchAngleOptimizer::bond_angle_residue_type_param_set(class std::shared_ptr<class core::scoring::mm::MMBondAngleResidueTypeParamSet>) –> void

  1. bond_angle_residue_type_param_set(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, param_set: pyrosetta.rosetta.core.scoring.mm.MMBondAngleResidueTypeParamSet) -> None

set input MMBondAngleResidueTypeParamSet, making a copy

C++: protocols::branch_angle::BranchAngleOptimizer::bond_angle_residue_type_param_set(class std::shared_ptr<const class core::scoring::mm::MMBondAngleResidueTypeParamSet>) –> void

initialized(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) bool

C++: protocols::branch_angle::BranchAngleOptimizer::initialized() const –> bool

num_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) int

get number of single branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::num_coef1() const –> unsigned long

num_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) int

get number of double branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::num_coef2() const –> unsigned long

num_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) int

get number of undefined single branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::num_undefined_coef1() const –> unsigned long

num_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) int

get number of undefined double branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::num_undefined_coef2() const –> unsigned long

optimize_angles(*args, **kwargs)

Overloaded function.

  1. optimize_angles(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID) -> int

  2. optimize_angles(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, optimize_for_minimum: bool) -> int

optimize angles branching off the defined mainchain

C++: protocols::branch_angle::BranchAngleOptimizer::optimize_angles(class core::pose::Pose &, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID, bool) –> unsigned long

overall_params(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, Ktheta: float, theta0: float, energy0: float) int

get overall bond angle parameters for the defined mainchian

C++: protocols::branch_angle::BranchAngleOptimizer::overall_params(const class core::pose::Pose &, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID, double &, double &, double &) –> unsigned long

param1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, branch_atomid1: pyrosetta.rosetta.core.id.AtomID) protocols::branch_angle::BranchParam1

get single branching atom bond angle parameters

C++: protocols::branch_angle::BranchAngleOptimizer::param1(const class core::pose::Pose &, const class core::id::AtomID &, const class core::id::AtomID &, const class core::id::AtomID &, const class core::id::AtomID &) const –> class protocols::branch_angle::BranchParam1

param2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, branch_atomid1: pyrosetta.rosetta.core.id.AtomID, branch_atomid2: pyrosetta.rosetta.core.id.AtomID) protocols::branch_angle::BranchParam2

get double branching atom bond angle parameters

C++: protocols::branch_angle::BranchAngleOptimizer::param2(const class core::pose::Pose &, const class core::id::AtomID &, const class core::id::AtomID &, const class core::id::AtomID &, const class core::id::AtomID &, const class core::id::AtomID &) const –> class protocols::branch_angle::BranchParam2

read_coef1(*args, **kwargs)

Overloaded function.

  1. read_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, in: pyrosetta.rosetta.std.istream) -> None

read single branching atom coefficients from an input stream

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef1(std::istream &) –> void

  1. read_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

read single branching atom coefficients from a file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef1(const std::string &) –> bool

read_coef1_default(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) None

read single branching atom coefficients from default database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef1_default() –> void

read_coef1_user(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) bool

read single branching atom coefficients from user database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef1_user() –> bool

read_coef2(*args, **kwargs)

Overloaded function.

  1. read_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, in: pyrosetta.rosetta.std.istream) -> None

read single branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef2(std::istream &) –> void

  1. read_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

read double branching atom coefficients from a file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef2(const std::string &) –> bool

read_coef2_default(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) None

read double branching atom coefficients from default database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef2_default() –> void

read_coef2_user(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) bool

read double branching atom coefficients from user database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_coef2_user() –> bool

read_database(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) None

read known parameters from the database

C++: protocols::branch_angle::BranchAngleOptimizer::read_database() –> void

read_undefined_coef1(*args, **kwargs)

Overloaded function.

  1. read_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, in: pyrosetta.rosetta.std.istream) -> None

read parameters for undefined single branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef1(std::istream &) –> void

  1. read_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

read parameters for undefined single branching atom coefficients from a file

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef1(const std::string &) –> bool

  1. read_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> bool

read single branching atom undefined coefficients from the database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef1() –> bool

read_undefined_coef2(*args, **kwargs)

Overloaded function.

  1. read_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, in: pyrosetta.rosetta.std.istream) -> None

read parameters for undefined double branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef2(std::istream &) –> void

  1. read_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

read parameters for undefined double branching atom coefficients from a file

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef2(const std::string &) –> bool

  1. read_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> bool

read double branching atom undefined coefficients from the database file

C++: protocols::branch_angle::BranchAngleOptimizer::read_undefined_coef2() –> bool

tolerance(*args, **kwargs)

Overloaded function.

  1. tolerance(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> float

C++: protocols::branch_angle::BranchAngleOptimizer::tolerance() const –> double

  1. tolerance(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, tolerance: float) -> None

C++: protocols::branch_angle::BranchAngleOptimizer::tolerance(double) –> void

write_database(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) None

write undefined parameters to the database

C++: protocols::branch_angle::BranchAngleOptimizer::write_database() const –> void

write_undefined_coef1(*args, **kwargs)

Overloaded function.

  1. write_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, out: pyrosetta.rosetta.std.ostream) -> None

write out parameters for undefined single branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef1(std::ostream &) const –> void

  1. write_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

write parameters for undefined single branching atom coefficients to a file

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef1(const std::string &) const –> bool

  1. write_undefined_coef1(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> bool

write single branching atom undefined coefficients to the database file

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef1() const –> bool

write_undefined_coef2(*args, **kwargs)

Overloaded function.

  1. write_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, out: pyrosetta.rosetta.std.ostream) -> None

write out parameters for undefined double branching atom coefficients

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef2(std::ostream &) const –> void

  1. write_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer, filename: str) -> bool

write parameters for undefined double branching atom coefficients to a file

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef2(const std::string &) const –> bool

  1. write_undefined_coef2(self: pyrosetta.rosetta.protocols.branch_angle.BranchAngleOptimizer) -> bool

write double branching atom undefined coefficients to the database file

C++: protocols::branch_angle::BranchAngleOptimizer::write_undefined_coef2() const –> bool

class pyrosetta.rosetta.protocols.branch_angle.BranchCoef1

Bases: pybind11_builtins.pybind11_object

a class to store coefficients for branching angle optimization around a single atom atom with three bonded neighbors

b1_bond_angle_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_A() const –> double

b1_bond_angle_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_B() const –> double

b1_bond_angle_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_C() const –> double

b1_torsion_offset_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_A() const –> double

b1_torsion_offset_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_B() const –> double

b1_torsion_offset_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_C() const –> double

evaluate(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1, m2_bond_angle: float, b1_torsion_offset: float, b1_bond_angle: float) None

calculate single branching angles for a main chain bond angle

C++: protocols::branch_angle::BranchCoef1::evaluate(const double, double &, double &) const –> void

overall_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall Ktheta parameter

C++: protocols::branch_angle::BranchCoef1::overall_Ktheta() const –> double

overall_energy0(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall energy0 parameter

C++: protocols::branch_angle::BranchCoef1::overall_energy0() const –> double

overall_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall theta0 parameter

C++: protocols::branch_angle::BranchCoef1::overall_theta0() const –> double

class pyrosetta.rosetta.protocols.branch_angle.BranchCoef2

Bases: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1

a class to store coefficients for branching angle optimization around a single atom atom with three bonded neighbors

b1_bond_angle_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_A() const –> double

b1_bond_angle_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_B() const –> double

b1_bond_angle_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 bond angle C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef1::b1_bond_angle_C() const –> double

b1_torsion_offset_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_A() const –> double

b1_torsion_offset_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_B() const –> double

b1_torsion_offset_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get branching atom 1 torsion offset C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef1::b1_torsion_offset_C() const –> double

b2_bond_angle_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 bond angle A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef2::b2_bond_angle_A() const –> double

b2_bond_angle_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 bond angle B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef2::b2_bond_angle_B() const –> double

b2_bond_angle_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 bond angle C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef2::b2_bond_angle_C() const –> double

b2_torsion_offset_A(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 torsion offset A coefficient (angle^0)

C++: protocols::branch_angle::BranchCoef2::b2_torsion_offset_A() const –> double

b2_torsion_offset_B(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 torsion offset B coefficient (angle^1)

C++: protocols::branch_angle::BranchCoef2::b2_torsion_offset_B() const –> double

b2_torsion_offset_C(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2) float

get branching atom 2 torsion offset C coefficient (angle^2)

C++: protocols::branch_angle::BranchCoef2::b2_torsion_offset_C() const –> double

evaluate(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef2, m2_bond_angle: float, b1_torsion_offset: float, b1_bond_angle: float, b2_torsion_offset: float, b2_bond_angle: float) None

calculate single branching angles for a main chain bond angle

C++: protocols::branch_angle::BranchCoef2::evaluate(const double, double &, double &, double &, double &) const –> void

overall_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall Ktheta parameter

C++: protocols::branch_angle::BranchCoef1::overall_Ktheta() const –> double

overall_energy0(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall energy0 parameter

C++: protocols::branch_angle::BranchCoef1::overall_energy0() const –> double

overall_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchCoef1) float

get overall theta0 parameter

C++: protocols::branch_angle::BranchCoef1::overall_theta0() const –> double

class pyrosetta.rosetta.protocols.branch_angle.BranchParam1

Bases: pybind11_builtins.pybind11_object

a class to store bond angle energy parameters around a single atom atom with three bonded neighbors

m1_b1_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 1 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_b1_Ktheta() const –> double

m1_b1_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 1 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_b1_theta0() const –> double

m1_m2_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 1 - mainchain atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_m2_Ktheta() const –> double

m1_m2_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 1 - mainchain atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_m2_theta0() const –> double

m2_b1_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 2 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m2_b1_Ktheta() const –> double

m2_b1_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 2 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m2_b1_theta0() const –> double

class pyrosetta.rosetta.protocols.branch_angle.BranchParam2

Bases: pyrosetta.rosetta.protocols.branch_angle.BranchParam1

a class to store bond angle energy parameters around a single atom atom with four bonded neighbors

b1_b2_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get Ktheta for branching atom 1 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::b1_b2_Ktheta() const –> double

b1_b2_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get theta0 for branching atom 1 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::b1_b2_theta0() const –> double

m1_b1_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 1 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_b1_Ktheta() const –> double

m1_b1_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 1 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_b1_theta0() const –> double

m1_b2_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get Ktheta for mainchain atom 1 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::m1_b2_Ktheta() const –> double

m1_b2_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get theta0 for mainchain atom 1 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::m1_b2_theta0() const –> double

m1_m2_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 1 - mainchain atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_m2_Ktheta() const –> double

m1_m2_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 1 - mainchain atom 1 angle

C++: protocols::branch_angle::BranchParam1::m1_m2_theta0() const –> double

m2_b1_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get Ktheta for mainchain atom 2 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m2_b1_Ktheta() const –> double

m2_b1_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam1) float

get theta0 for mainchain atom 2 - branching atom 1 angle

C++: protocols::branch_angle::BranchParam1::m2_b1_theta0() const –> double

m2_b2_Ktheta(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get Ktheta for mainchain atom 2 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::m2_b2_Ktheta() const –> double

m2_b2_theta0(self: pyrosetta.rosetta.protocols.branch_angle.BranchParam2) float

get theta0 for mainchain atom 2 - branching atom 2 angle

C++: protocols::branch_angle::BranchParam2::m2_b2_theta0() const –> double

pyrosetta.rosetta.protocols.branch_angle.branching_atomid1(pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, branch_atomid1: pyrosetta.rosetta.core.id.AtomID) None

get 1 branching atom

C++: protocols::branch_angle::branching_atomid1(const class core::pose::Pose &, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID &) –> void

pyrosetta.rosetta.protocols.branch_angle.branching_atomids2(pose: pyrosetta.rosetta.core.pose.Pose, main_atomid1: pyrosetta.rosetta.core.id.AtomID, center_atomid: pyrosetta.rosetta.core.id.AtomID, main_atomid2: pyrosetta.rosetta.core.id.AtomID, branch_atomid1: pyrosetta.rosetta.core.id.AtomID, branch_atomid2: pyrosetta.rosetta.core.id.AtomID) None

get 2 branching atoms ordered according their torsion offsets

C++: protocols::branch_angle::branching_atomids2(const class core::pose::Pose &, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID, class core::id::AtomID &, class core::id::AtomID &) –> void

pyrosetta.rosetta.protocols.branch_angle.get_branching_atoms2(main_atom2: pyrosetta.rosetta.core.kinematics.tree.Atom, branch_atom1: pyrosetta.rosetta.core.kinematics.tree.Atom, branch_atom2: pyrosetta.rosetta.core.kinematics.tree.Atom) None

get 2 siblings of an atom ordered according their torsion offsets

C++: protocols::branch_angle::get_branching_atoms2(const class std::shared_ptr<const class core::kinematics::tree::Atom>, class std::shared_ptr<const class core::kinematics::tree::Atom> &, class std::shared_ptr<const class core::kinematics::tree::Atom> &) –> void