vip¶
Bindings for protocols::vip namespace
- class pyrosetta.rosetta.protocols.vip.VIP_Mover¶
Bases:
pybind11_object
- apply(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::apply() –> void
- apply_holes(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::apply_holes() –> void
- assign(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.protocols.vip.VIP_Mover ¶
C++: protocols::vip::VIP_Mover::operator=(const class protocols::vip::VIP_Mover &) –> class protocols::vip::VIP_Mover &
- compute_number_cavities(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::compute_number_cavities() –> void
- cranny_packer(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::cranny_packer() –> void
- cull_mutatable_residues(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::cull_mutatable_residues() –> void
- dump_pdb_to_file(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.core.pose.Pose, : str) None ¶
C++: protocols::vip::VIP_Mover::dump_pdb_to_file(class core::pose::Pose &, std::string) –> void
- get_cav_approx(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : int) float ¶
C++: protocols::vip::VIP_Mover::get_cav_approx(unsigned long) –> double
- get_cavity_positions(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::get_cavity_positions() –> void
- get_final_energy(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) float ¶
C++: protocols::vip::VIP_Mover::get_final_energy() –> double
- get_final_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::vip::VIP_Mover::get_final_pose() –> class core::pose::Pose
- get_neighbors(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::get_neighbors() –> void
- get_unrelaxed_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::vip::VIP_Mover::get_unrelaxed_pose() –> class core::pose::Pose &
- iteration(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) int ¶
C++: protocols::vip::VIP_Mover::iteration() –> unsigned long
- minimize_conformation(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::minimize_conformation() –> void
- nook_finder(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::nook_finder() –> void
- print_pack_report(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::print_pack_report() –> void
- print_relax_report(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::print_relax_report() –> void
- relax_favorable_poses(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::relax_favorable_poses() –> void
- set_energy_to_beat(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, in_value: float) None ¶
C++: protocols::vip::VIP_Mover::set_energy_to_beat(double) –> void
- set_excluded_positions(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::set_excluded_positions() –> void
- set_initial_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.core.pose.Pose) None ¶
C++: protocols::vip::VIP_Mover::set_initial_pose(class core::pose::Pose) –> void
- set_iteration(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, it: int) None ¶
C++: protocols::vip::VIP_Mover::set_iteration(unsigned long) –> void
- set_use_stored_energy(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, in_value: bool) None ¶
C++: protocols::vip::VIP_Mover::set_use_stored_energy(bool) –> void
- skip_relax(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::skip_relax() –> void
- sort_fill_energies(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::sort_fill_energies() –> void
- sort_relaxed_poses(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::sort_relaxed_poses() –> void
- try_point_mutants(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None ¶
C++: protocols::vip::VIP_Mover::try_point_mutants() –> void
- class pyrosetta.rosetta.protocols.vip.VIP_Report¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.protocols.vip.VIP_Report, : pyrosetta.rosetta.protocols.vip.VIP_Report) pyrosetta.rosetta.protocols.vip.VIP_Report ¶
C++: protocols::vip::VIP_Report::operator=(const class protocols::vip::VIP_Report &) –> class protocols::vip::VIP_Report &
- get_GOE_packstat_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_relax: pyrosetta.rosetta.utility.vector1_core_pose_Pose) None ¶
C++: protocols::vip::VIP_Report::get_GOE_packstat_report(class core::pose::Pose &, class utility::vector1<class core::pose::Pose, class std::allocator<class core::pose::Pose> > &) –> void
- get_GOE_relaxed_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_repack_e: pyrosetta.rosetta.utility.vector1_double, goe_repack_res: pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t, goe_repack_pos: pyrosetta.rosetta.utility.vector1_unsigned_long, it: int, use_stored: bool, stored_e: float) None ¶
C++: protocols::vip::VIP_Report::get_GOE_relaxed_report(class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<class std::shared_ptr<class core::conformation::Residue>, class std::allocator<class std::shared_ptr<class core::conformation::Residue> > > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, bool, double) –> void
- get_GOE_repack_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_repack_e: pyrosetta.rosetta.utility.vector1_double, goe_repack_res: pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t, goe_repack_pos: pyrosetta.rosetta.utility.vector1_unsigned_long, it: int, use_stored: bool, stored_e: float) None ¶
C++: protocols::vip::VIP_Report::get_GOE_repack_report(class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<class std::shared_ptr<class core::conformation::Residue>, class std::allocator<class std::shared_ptr<class core::conformation::Residue> > > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, bool, double) –> void
- pyrosetta.rosetta.protocols.vip.are_seqs_different(p1: pyrosetta.rosetta.core.pose.Pose, p2: pyrosetta.rosetta.core.pose.Pose) bool ¶
C++: protocols::vip::are_seqs_different(class core::pose::Pose &, class core::pose::Pose &) –> bool
- pyrosetta.rosetta.protocols.vip.base_name(str: str) str ¶
C++: protocols::vip::base_name(const std::string &) –> std::string
- pyrosetta.rosetta.protocols.vip.get_out_tag(fname: str) str ¶
C++: protocols::vip::get_out_tag(const std::string &) –> std::string
- pyrosetta.rosetta.protocols.vip.output_packstat(: pyrosetta.rosetta.core.pose.Pose) float ¶
C++: protocols::vip::output_packstat(class core::pose::Pose &) –> double
- pyrosetta.rosetta.protocols.vip.set_local_movemap(pose: pyrosetta.rosetta.core.pose.Pose, position: int, mmap: pyrosetta.rosetta.core.kinematics.MoveMap) None ¶
C++: protocols::vip::set_local_movemap(class core::pose::Pose &, unsigned long, class std::shared_ptr<class core::kinematics::MoveMap>) –> void