vip

Bindings for protocols::vip namespace

class pyrosetta.rosetta.protocols.vip.VIP_Mover

Bases: pybind11_builtins.pybind11_object

apply(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::apply() –> void

apply_holes(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::apply_holes() –> void

assign(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.protocols.vip.VIP_Mover

C++: protocols::vip::VIP_Mover::operator=(const class protocols::vip::VIP_Mover &) –> class protocols::vip::VIP_Mover &

compute_number_cavities(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::compute_number_cavities() –> void

cranny_packer(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::cranny_packer() –> void

cull_mutatable_residues(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::cull_mutatable_residues() –> void

dump_pdb_to_file(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.core.pose.Pose, : str) None

C++: protocols::vip::VIP_Mover::dump_pdb_to_file(class core::pose::Pose &, std::string) –> void

get_cav_approx(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : int) float

C++: protocols::vip::VIP_Mover::get_cav_approx(unsigned long) –> double

get_cavity_positions(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::get_cavity_positions() –> void

get_final_energy(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) float

C++: protocols::vip::VIP_Mover::get_final_energy() –> double

get_final_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::vip::VIP_Mover::get_final_pose() –> class core::pose::Pose

get_neighbors(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::get_neighbors() –> void

get_unrelaxed_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::vip::VIP_Mover::get_unrelaxed_pose() –> class core::pose::Pose &

iteration(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) int

C++: protocols::vip::VIP_Mover::iteration() –> unsigned long

minimize_conformation(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::minimize_conformation() –> void

nook_finder(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::nook_finder() –> void

print_pack_report(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::print_pack_report() –> void

print_relax_report(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::print_relax_report() –> void

relax_favorable_poses(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::relax_favorable_poses() –> void

set_energy_to_beat(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, in_value: float) None

C++: protocols::vip::VIP_Mover::set_energy_to_beat(double) –> void

set_excluded_positions(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::set_excluded_positions() –> void

set_initial_pose(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, : pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::vip::VIP_Mover::set_initial_pose(class core::pose::Pose) –> void

set_iteration(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, it: int) None

C++: protocols::vip::VIP_Mover::set_iteration(unsigned long) –> void

set_use_stored_energy(self: pyrosetta.rosetta.protocols.vip.VIP_Mover, in_value: bool) None

C++: protocols::vip::VIP_Mover::set_use_stored_energy(bool) –> void

skip_relax(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::skip_relax() –> void

sort_fill_energies(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::sort_fill_energies() –> void

sort_relaxed_poses(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::sort_relaxed_poses() –> void

try_point_mutants(self: pyrosetta.rosetta.protocols.vip.VIP_Mover) None

C++: protocols::vip::VIP_Mover::try_point_mutants() –> void

class pyrosetta.rosetta.protocols.vip.VIP_Report

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.vip.VIP_Report, : pyrosetta.rosetta.protocols.vip.VIP_Report) pyrosetta.rosetta.protocols.vip.VIP_Report

C++: protocols::vip::VIP_Report::operator=(const class protocols::vip::VIP_Report &) –> class protocols::vip::VIP_Report &

get_GOE_packstat_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_relax: pyrosetta.rosetta.utility.vector1_core_pose_Pose) None

C++: protocols::vip::VIP_Report::get_GOE_packstat_report(class core::pose::Pose &, class utility::vector1<class core::pose::Pose, class std::allocator<class core::pose::Pose> > &) –> void

get_GOE_relaxed_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_repack_e: pyrosetta.rosetta.utility.vector1_double, goe_repack_res: pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t, goe_repack_pos: pyrosetta.rosetta.utility.vector1_unsigned_long, it: int, use_stored: bool, stored_e: float) None

C++: protocols::vip::VIP_Report::get_GOE_relaxed_report(class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<class std::shared_ptr<class core::conformation::Residue>, class std::allocator<class std::shared_ptr<class core::conformation::Residue> > > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, bool, double) –> void

get_GOE_repack_report(self: pyrosetta.rosetta.protocols.vip.VIP_Report, goe_native: pyrosetta.rosetta.core.pose.Pose, goe_repack_e: pyrosetta.rosetta.utility.vector1_double, goe_repack_res: pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_conformation_Residue_t, goe_repack_pos: pyrosetta.rosetta.utility.vector1_unsigned_long, it: int, use_stored: bool, stored_e: float) None

C++: protocols::vip::VIP_Report::get_GOE_repack_report(class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<class std::shared_ptr<class core::conformation::Residue>, class std::allocator<class std::shared_ptr<class core::conformation::Residue> > > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, bool, double) –> void

pyrosetta.rosetta.protocols.vip.are_seqs_different(p1: pyrosetta.rosetta.core.pose.Pose, p2: pyrosetta.rosetta.core.pose.Pose) bool

C++: protocols::vip::are_seqs_different(class core::pose::Pose &, class core::pose::Pose &) –> bool

pyrosetta.rosetta.protocols.vip.base_name(str: str) str

C++: protocols::vip::base_name(const std::string &) –> std::string

pyrosetta.rosetta.protocols.vip.get_out_tag(fname: str) str

C++: protocols::vip::get_out_tag(const std::string &) –> std::string

pyrosetta.rosetta.protocols.vip.output_packstat(: pyrosetta.rosetta.core.pose.Pose) float

C++: protocols::vip::output_packstat(class core::pose::Pose &) –> double

pyrosetta.rosetta.protocols.vip.set_local_movemap(pose: pyrosetta.rosetta.core.pose.Pose, position: int, mmap: pyrosetta.rosetta.core.kinematics.MoveMap) None

C++: protocols::vip::set_local_movemap(class core::pose::Pose &, unsigned long, class std::shared_ptr<class core::kinematics::MoveMap>) –> void