movers

Bindings for protocols::sewing::movers namespace

class pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover

Bases: AssemblyMover

an AssemblyMover for adding to existing poses

add_motif_scorers_to_score_file(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::AssemblyMover::add_motif_scorers_to_score_file(class core::pose::Pose &, class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly> &) –> void

add_requirement(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirement: protocols::sewing::requirements::AssemblyRequirement) → None

C++: protocols::sewing::movers::AssemblyMover::add_requirement(class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>) –> void

add_scorer(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, scorer: protocols::sewing::scoring::AssemblyScorer) → int

add an AssemblyScorer and its weight to the ScorerMap

C++: protocols::sewing::movers::AssemblyMover::add_scorer(class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>) –> unsigned long

apply(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose) → None

Apply the mover

C++: protocols::sewing::movers::AppendAssemblyMover::apply(class core::pose::Pose &) –> void

assembly_meets_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → bool

C++: protocols::sewing::movers::AssemblyMover::assembly_meets_requirements(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> bool

static assembly_mover_subtag_ct_namer(: str) → str

C++: protocols::sewing::movers::AssemblyMover::assembly_mover_subtag_ct_namer(std::string) –> std::string

assign(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover

C++: protocols::sewing::movers::AppendAssemblyMover::operator=(const class protocols::sewing::movers::AppendAssemblyMover &) –> class protocols::sewing::movers::AppendAssemblyMover &

static attributes_for_append_assembly_mover(attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::sewing::movers::AppendAssemblyMover::attributes_for_append_assembly_mover(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static class_name() → str

Show the contents of the Mover

C++: protocols::sewing::movers::AppendAssemblyMover::class_name() –> std::string

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::AppendAssemblyMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

static define_generic_assembly_mover_attributes(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::sewing::movers::AssemblyMover::define_generic_assembly_mover_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

find_starting_segment(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → pyrosetta.rosetta.protocols.sewing.data_storage.SmartSegment

C++: protocols::sewing::movers::AppendAssemblyMover::find_starting_segment(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> class std::shared_ptr<class protocols::sewing::data_storage::SmartSegment>

fresh_instance(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::AppendAssemblyMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AssemblyMover::generate_assembly(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

get_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_add_probability() const –> double

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t

C++: protocols::sewing::movers::AssemblyMover::get_assembly_scorers() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >

get_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_basis_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>

get_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_conformer_switch_probability() const –> double

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_delete_probability() const –> double

get_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_edge_file_name() const –> std::string

get_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_edge_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>

get_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_end_temperature() const –> double

get_extend_mode(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_extend_mode() const –> bool

get_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_hashed() const –> bool

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription

C++: protocols::sewing::movers::AppendAssemblyMover::get_ligands() const –> class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> >

get_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_lowest_score() const –> double

get_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_cycles() const –> unsigned long

get_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_num_segments() const –> unsigned long

get_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_segment_length() const –> unsigned long

get_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_min_cycles() const –> unsigned long

get_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_model_file_name() const –> std::string

get_modifiable_terminus(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_modifiable_terminus() const –> char

get_name(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

Get the name of the Mover

C++: protocols::sewing::movers::AppendAssemblyMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_nonconst_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription

C++: protocols::sewing::movers::AppendAssemblyMover::get_nonconst_ligands() –> class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> > &

get_output_partner(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_output_partner() const –> bool

get_output_pose_count(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_count() const –> unsigned long

get_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_per_move() const –> bool

get_partner_pdb(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::sewing::movers::AppendAssemblyMover::get_partner_pdb() const –> class std::shared_ptr<class core::pose::Pose>

get_pose_segment_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_dssp() const –> std::string

get_pose_segment_ends_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_ends_string() const –> std::string

get_pose_segment_starts_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_starts_string() const –> std::string

get_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_recover_lowest_assembly() const –> bool

get_required_resnums(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_required_resnums() const –> std::string

get_required_selector(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::sewing::movers::AppendAssemblyMover::get_required_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

get_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t

C++: protocols::sewing::movers::AssemblyMover::get_requirements() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >

get_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector

C++: protocols::sewing::movers::AssemblyMover::get_segment_vector() const –> class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>

get_segments_from_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_segments_from_dssp() const –> bool

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_start_node_vital_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_start_node_vital_segments() const –> std::string

get_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_start_temperature() const –> double

get_strict_dssp_changes(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_strict_dssp_changes() const –> bool

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

get_unweighted_score_term(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, scorer_index: int) → float

get the unweighted value for a particular score term

C++: protocols::sewing::movers::AssemblyMover::get_unweighted_score_term(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, unsigned long) –> double

get_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_window_width() const –> unsigned long

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::sewing::movers::AssemblyMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

output_pose(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AssemblyMover::output_pose(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

parse_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the AssemblyScorers subtag of AssemblyMover

C++: protocols::sewing::movers::AssemblyMover::parse_assembly_scorers(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::sewing::movers::AppendAssemblyMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the Requirements subtag of AssemblyMover.

C++: protocols::sewing::movers::AssemblyMover::parse_requirements(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

print_statistics(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::AssemblyMover::print_statistics(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) const –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::AppendAssemblyMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

revert_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

resets scorers to their score before the move that is now being reverted

C++: protocols::sewing::movers::AssemblyMover::revert_score() –> void

score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → float

return the weighted sum of all score terms for the assembly.

C++: protocols::sewing::movers::AssemblyMover::score(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> double

set_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, add_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_add_probability(double) –> void

set_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly_scorers: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_assembly_scorers(class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >) –> void

set_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, bmg: pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_basis_map_generator(class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>) –> void

set_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, prob: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_conformer_switch_probability(double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_default_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default score function for this AssemblyMover. Called if no AssemblyScorers are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_assembly_scorers() –> void

set_default_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default requirements for this AssemblyMover. Called if no requirements are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_requirements() –> void

set_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, delete_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_delete_probability(double) –> void

set_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, edges: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_file_name(std::string) –> void

set_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, emg: pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_map_generator(class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>) –> void

set_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_end_temperature(double) –> void

set_extend_mode(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_extend_mode(bool) –> void

set_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, hashed: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_hashed(bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_ligands(class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> >) –> void

set_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, lowest_score: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_lowest_score(double) –> void

set_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_cycles(unsigned long) –> void

set_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_segs: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_num_segments(unsigned long) –> void

set_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_seg_length: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_segment_length(unsigned long) –> void

set_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, min_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_min_cycles(unsigned long) –> void

set_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, models: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_model_file_name(std::string) –> void

set_modifiable_terminus(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_modifiable_terminus(char) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_output_partner(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_output_partner(bool) –> void

set_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, output_pose_per_move: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_output_pose_per_move(bool) –> void

set_partner_pdb(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_partner_pdb(class std::shared_ptr<class core::pose::Pose>) –> void

set_pose_segment_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_dssp(const std::string &) –> void

set_pose_segment_ends_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_ends_string(const std::string &) –> void

set_pose_segment_starts_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_starts_string(const std::string &) –> void

set_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_recover_lowest_assembly(bool) –> void

set_required_resnums(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_required_resnums(std::string) –> void

set_required_selector(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_required_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

set_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirements: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_requirements(class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >) –> void

set_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, segvec: pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector) → None

C++: protocols::sewing::movers::AssemblyMover::set_segment_vector(class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>) –> void

set_segments_from_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_segments_from_dssp(bool) –> void

set_start_node_vital_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_start_node_vital_segments(std::string) –> void

set_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_start_temperature(double) –> void

set_strict_dssp_changes(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_strict_dssp_changes(bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_up_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly

C++: protocols::sewing::movers::AppendAssemblyMover::set_up_assembly(class core::pose::Pose &) –> class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>

set_up_hashing(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

C++: protocols::sewing::movers::AssemblyMover::set_up_hashing() –> void

set_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, width: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_window_width(unsigned long) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) -> None

2. show(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, output: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::sewing::movers::AppendAssemblyMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator, : pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator) → pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::operator=(const class protocols::sewing::movers::AppendAssemblyMoverCreator &) –> class protocols::sewing::movers::AppendAssemblyMoverCreator &

static class_name() → str

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::class_name() –> std::string

create_mover(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator) → str

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::keyname() const –> std::string

static mover_name() → str

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::mover_name() –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMoverCreator, : pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::AppendAssemblyMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover

Bases: Mover

add_motif_scorers_to_score_file(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::AssemblyMover::add_motif_scorers_to_score_file(class core::pose::Pose &, class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly> &) –> void

add_requirement(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirement: protocols::sewing::requirements::AssemblyRequirement) → None

C++: protocols::sewing::movers::AssemblyMover::add_requirement(class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>) –> void

add_scorer(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, scorer: protocols::sewing::scoring::AssemblyScorer) → int

add an AssemblyScorer and its weight to the ScorerMap

C++: protocols::sewing::movers::AssemblyMover::add_scorer(class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>) –> unsigned long

apply(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose) → None

Apply the mover

C++: protocols::sewing::movers::AssemblyMover::apply(class core::pose::Pose &) –> void

assembly_meets_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → bool

C++: protocols::sewing::movers::AssemblyMover::assembly_meets_requirements(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> bool

static assembly_mover_subtag_ct_namer(: str) → str

C++: protocols::sewing::movers::AssemblyMover::assembly_mover_subtag_ct_namer(std::string) –> std::string

assign(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover

C++: protocols::sewing::movers::AssemblyMover::operator=(const class protocols::sewing::movers::AssemblyMover &) –> class protocols::sewing::movers::AssemblyMover &

static class_name() → str

Show the contents of the Mover

C++: protocols::sewing::movers::AssemblyMover::class_name() –> std::string

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::AssemblyMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

static define_generic_assembly_mover_attributes(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::sewing::movers::AssemblyMover::define_generic_assembly_mover_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::AssemblyMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AssemblyMover::generate_assembly(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

get_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_add_probability() const –> double

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t

C++: protocols::sewing::movers::AssemblyMover::get_assembly_scorers() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >

get_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_basis_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>

get_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_conformer_switch_probability() const –> double

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_delete_probability() const –> double

get_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_edge_file_name() const –> std::string

get_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_edge_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>

get_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_end_temperature() const –> double

get_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_hashed() const –> bool

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_lowest_score() const –> double

get_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_cycles() const –> unsigned long

get_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_num_segments() const –> unsigned long

get_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_segment_length() const –> unsigned long

get_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_min_cycles() const –> unsigned long

get_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_model_file_name() const –> std::string

get_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

Get the name of the Mover

C++: protocols::sewing::movers::AssemblyMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_output_pose_count(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_count() const –> unsigned long

get_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_per_move() const –> bool

get_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_recover_lowest_assembly() const –> bool

get_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t

C++: protocols::sewing::movers::AssemblyMover::get_requirements() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >

get_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector

C++: protocols::sewing::movers::AssemblyMover::get_segment_vector() const –> class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_start_temperature() const –> double

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

get_unweighted_score_term(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, scorer_index: int) → float

get the unweighted value for a particular score term

C++: protocols::sewing::movers::AssemblyMover::get_unweighted_score_term(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, unsigned long) –> double

get_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_window_width() const –> unsigned long

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::sewing::movers::AssemblyMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

output_pose(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AssemblyMover::output_pose(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

parse_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the AssemblyScorers subtag of AssemblyMover

C++: protocols::sewing::movers::AssemblyMover::parse_assembly_scorers(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::sewing::movers::AssemblyMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the Requirements subtag of AssemblyMover.

C++: protocols::sewing::movers::AssemblyMover::parse_requirements(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

print_statistics(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::AssemblyMover::print_statistics(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) const –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::AssemblyMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

revert_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

resets scorers to their score before the move that is now being reverted

C++: protocols::sewing::movers::AssemblyMover::revert_score() –> void

score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → float

return the weighted sum of all score terms for the assembly.

C++: protocols::sewing::movers::AssemblyMover::score(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> double

set_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, add_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_add_probability(double) –> void

set_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly_scorers: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_assembly_scorers(class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >) –> void

set_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, bmg: pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_basis_map_generator(class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>) –> void

set_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, prob: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_conformer_switch_probability(double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_default_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default score function for this AssemblyMover. Called if no AssemblyScorers are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_assembly_scorers() –> void

set_default_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default requirements for this AssemblyMover. Called if no requirements are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_requirements() –> void

set_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, delete_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_delete_probability(double) –> void

set_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, edges: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_file_name(std::string) –> void

set_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, emg: pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_map_generator(class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>) –> void

set_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_end_temperature(double) –> void

set_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, hashed: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_hashed(bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, lowest_score: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_lowest_score(double) –> void

set_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_cycles(unsigned long) –> void

set_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_segs: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_num_segments(unsigned long) –> void

set_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_seg_length: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_segment_length(unsigned long) –> void

set_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, min_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_min_cycles(unsigned long) –> void

set_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, models: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_model_file_name(std::string) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, output_pose_per_move: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_output_pose_per_move(bool) –> void

set_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_recover_lowest_assembly(bool) –> void

set_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirements: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_requirements(class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >) –> void

set_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, segvec: pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector) → None

C++: protocols::sewing::movers::AssemblyMover::set_segment_vector(class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>) –> void

set_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_start_temperature(double) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_up_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly

C++: protocols::sewing::movers::AssemblyMover::set_up_assembly(class core::pose::Pose &) –> class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>

set_up_hashing(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

C++: protocols::sewing::movers::AssemblyMover::set_up_hashing() –> void

set_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, width: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_window_width(unsigned long) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) -> None

2. show(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, output: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::sewing::movers::AssemblyMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator, : pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator) → pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator

C++: protocols::sewing::movers::AssemblyMoverCreator::operator=(const class protocols::sewing::movers::AssemblyMoverCreator &) –> class protocols::sewing::movers::AssemblyMoverCreator &

static class_name() → str

C++: protocols::sewing::movers::AssemblyMoverCreator::class_name() –> std::string

create_mover(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::sewing::movers::AssemblyMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator) → str

C++: protocols::sewing::movers::AssemblyMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMoverCreator, : pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::AssemblyMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover

Bases: AppendAssemblyMover

an AssemblyMover for adding to existing poses

add_motif_scorers_to_score_file(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::add_motif_scorers_to_score_file(class core::pose::Pose &, class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly> &) –> void

add_requirement(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirement: protocols::sewing::requirements::AssemblyRequirement) → None

C++: protocols::sewing::movers::AssemblyMover::add_requirement(class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>) –> void

add_scorer(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, scorer: protocols::sewing::scoring::AssemblyScorer) → int

add an AssemblyScorer and its weight to the ScorerMap

C++: protocols::sewing::movers::AssemblyMover::add_scorer(class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>) –> unsigned long

apply(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose) → None

Apply the mover

C++: protocols::sewing::movers::LigandBindingAssemblyMover::apply(class core::pose::Pose &) –> void

assembly_meets_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → bool

C++: protocols::sewing::movers::AssemblyMover::assembly_meets_requirements(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> bool

static assembly_mover_subtag_ct_namer(: str) → str

C++: protocols::sewing::movers::AssemblyMover::assembly_mover_subtag_ct_namer(std::string) –> std::string

assign(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, : pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover

C++: protocols::sewing::movers::LigandBindingAssemblyMover::operator=(const class protocols::sewing::movers::LigandBindingAssemblyMover &) –> class protocols::sewing::movers::LigandBindingAssemblyMover &

static attributes_for_append_assembly_mover(attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::sewing::movers::AppendAssemblyMover::attributes_for_append_assembly_mover(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static class_name() → str

Show the contents of the Mover

C++: protocols::sewing::movers::LigandBindingAssemblyMover::class_name() –> std::string

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::LigandBindingAssemblyMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

static define_generic_assembly_mover_attributes(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: protocols::sewing::movers::AssemblyMover::define_generic_assembly_mover_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

find_starting_segment(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → pyrosetta.rosetta.protocols.sewing.data_storage.SmartSegment

C++: protocols::sewing::movers::AppendAssemblyMover::find_starting_segment(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> class std::shared_ptr<class protocols::sewing::data_storage::SmartSegment>

fresh_instance(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::sewing::movers::LigandBindingAssemblyMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::generate_assembly(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

get_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_add_probability() const –> double

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t

C++: protocols::sewing::movers::AssemblyMover::get_assembly_scorers() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >

get_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_basis_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>

get_binding_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → int

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_binding_cycles() const –> unsigned long

get_build_site_only(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → bool

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_build_site_only() const –> bool

get_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_conformer_switch_probability() const –> double

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_delete_probability() const –> double

get_distance_cutoff(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → float

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_distance_cutoff() const –> double

get_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_edge_file_name() const –> std::string

get_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator

C++: protocols::sewing::movers::AssemblyMover::get_edge_map_generator() const –> class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>

get_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_end_temperature() const –> double

get_extend_mode(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_extend_mode() const –> bool

get_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_hashed() const –> bool

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_ligand_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_ligand_requirements() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >

get_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription

C++: protocols::sewing::movers::AppendAssemblyMover::get_ligands() const –> class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> >

get_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_lowest_score() const –> double

get_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_cycles() const –> unsigned long

get_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_num_segments() const –> unsigned long

get_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_max_segment_length() const –> unsigned long

get_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_min_cycles() const –> unsigned long

get_min_distance(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartSegment, : pyrosetta.rosetta.protocols.sewing.data_storage.LigandResidue) → float

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_min_distance(class std::shared_ptr<class protocols::sewing::data_storage::SmartSegment>, class std::shared_ptr<class protocols::sewing::data_storage::LigandResidue>) –> double

get_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → str

C++: protocols::sewing::movers::AssemblyMover::get_model_file_name() const –> std::string

get_modifiable_terminus(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_modifiable_terminus() const –> char

get_name(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → str

Get the name of the Mover

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_non_ligand_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_non_ligand_requirements() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >

get_nonconst_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription

C++: protocols::sewing::movers::AppendAssemblyMover::get_nonconst_ligands() –> class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> > &

get_output_partner(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_output_partner() const –> bool

get_output_pose_count(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_count() const –> unsigned long

get_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_output_pose_per_move() const –> bool

get_partner_pdb(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::sewing::movers::AppendAssemblyMover::get_partner_pdb() const –> class std::shared_ptr<class core::pose::Pose>

get_pose_segment_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_dssp() const –> std::string

get_pose_segment_ends_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_ends_string() const –> std::string

get_pose_segment_starts_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_pose_segment_starts_string() const –> std::string

get_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → bool

C++: protocols::sewing::movers::AssemblyMover::get_recover_lowest_assembly() const –> bool

get_required_resnums(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_required_resnums() const –> std::string

get_required_selector(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::sewing::movers::AppendAssemblyMover::get_required_selector() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

get_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t

C++: protocols::sewing::movers::AssemblyMover::get_requirements() const –> class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >

get_segment_distance_cutoff(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) → int

C++: protocols::sewing::movers::LigandBindingAssemblyMover::get_segment_distance_cutoff() const –> unsigned long

get_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector

C++: protocols::sewing::movers::AssemblyMover::get_segment_vector() const –> class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>

get_segments_from_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_segments_from_dssp() const –> bool

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_start_node_vital_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → str

C++: protocols::sewing::movers::AppendAssemblyMover::get_start_node_vital_segments() const –> std::string

get_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → float

C++: protocols::sewing::movers::AssemblyMover::get_start_temperature() const –> double

get_strict_dssp_changes(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover) → bool

C++: protocols::sewing::movers::AppendAssemblyMover::get_strict_dssp_changes() const –> bool

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

get_unweighted_score_term(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, scorer_index: int) → float

get the unweighted value for a particular score term

C++: protocols::sewing::movers::AssemblyMover::get_unweighted_score_term(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, unsigned long) –> double

get_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → int

C++: protocols::sewing::movers::AssemblyMover::get_window_width() const –> unsigned long

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::sewing::movers::AssemblyMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

output_pose(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly: pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AssemblyMover::output_pose(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>, class core::pose::Pose &) –> void

parse_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the AssemblyScorers subtag of AssemblyMover

C++: protocols::sewing::movers::AssemblyMover::parse_assembly_scorers(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::sewing::movers::LigandBindingAssemblyMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

parse_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None

Parses the Requirements subtag of AssemblyMover.

C++: protocols::sewing::movers::AssemblyMover::parse_requirements(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

print_statistics(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → None

C++: protocols::sewing::movers::AssemblyMover::print_statistics(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) const –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

revert_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

resets scorers to their score before the move that is now being reverted

C++: protocols::sewing::movers::AssemblyMover::revert_score() –> void

score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly) → float

return the weighted sum of all score terms for the assembly.

C++: protocols::sewing::movers::AssemblyMover::score(class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>) –> double

set_add_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, add_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_add_probability(double) –> void

set_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, assembly_scorers: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_scoring_AssemblyScorer_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_assembly_scorers(class utility::vector1<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer>, class std::allocator<class std::shared_ptr<class protocols::sewing::scoring::AssemblyScorer> > >) –> void

set_basis_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, bmg: pyrosetta.rosetta.protocols.sewing.hashing.BasisMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_basis_map_generator(class std::shared_ptr<class protocols::sewing::hashing::BasisMapGenerator>) –> void

set_binding_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, cycles: int) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_binding_cycles(unsigned long) –> void

set_build_site_only(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, build_only: bool) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_build_site_only(bool) –> void

set_conformer_switch_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, prob: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_conformer_switch_probability(double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_default_assembly_scorers(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default score function for this AssemblyMover. Called if no AssemblyScorers are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_assembly_scorers() –> void

set_default_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

Set default requirements for this AssemblyMover. Called if no requirements are specified through RosettaScripts.

C++: protocols::sewing::movers::AssemblyMover::set_default_requirements() –> void

set_delete_probability(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, delete_probability: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_delete_probability(double) –> void

set_distance_cutoff(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, cutoff: float) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_distance_cutoff(double) –> void

set_edge_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, edges: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_file_name(std::string) –> void

set_edge_map_generator(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, emg: pyrosetta.rosetta.protocols.sewing.hashing.EdgeMapGenerator) → None

C++: protocols::sewing::movers::AssemblyMover::set_edge_map_generator(class std::shared_ptr<class protocols::sewing::hashing::EdgeMapGenerator>) –> void

set_end_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_end_temperature(double) –> void

set_extend_mode(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_extend_mode(bool) –> void

set_hashed(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, hashed: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_hashed(bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_ligand_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, requirements: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_ligand_requirements(class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >) –> void

set_ligands(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.utility.vector1_protocols_sewing_data_storage_LigandDescription) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_ligands(class utility::vector1<struct protocols::sewing::data_storage::LigandDescription, class std::allocator<struct protocols::sewing::data_storage::LigandDescription> >) –> void

set_lowest_score(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, lowest_score: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_lowest_score(double) –> void

set_max_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_cycles(unsigned long) –> void

set_max_num_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_segs: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_num_segments(unsigned long) –> void

set_max_segment_length(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, max_seg_length: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_max_segment_length(unsigned long) –> void

set_min_cycles(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, min_cycles: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_min_cycles(unsigned long) –> void

set_model_file_name(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, models: str) → None

C++: protocols::sewing::movers::AssemblyMover::set_model_file_name(std::string) –> void

set_modifiable_terminus(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_modifiable_terminus(char) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_non_ligand_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, requirements: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_non_ligand_requirements(class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >) –> void

set_output_partner(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_output_partner(bool) –> void

set_output_pose_per_move(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, output_pose_per_move: bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_output_pose_per_move(bool) –> void

set_partner_pdb(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_partner_pdb(class std::shared_ptr<class core::pose::Pose>) –> void

set_pose_segment_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_dssp(const std::string &) –> void

set_pose_segment_ends_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_ends_string(const std::string &) –> void

set_pose_segment_starts_string(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_pose_segment_starts_string(const std::string &) –> void

set_recover_lowest_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, : bool) → None

C++: protocols::sewing::movers::AssemblyMover::set_recover_lowest_assembly(bool) –> void

set_required_resnums(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_required_resnums(std::string) –> void

set_required_selector(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_required_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

set_requirements(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, requirements: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_sewing_requirements_AssemblyRequirement_t) → None

C++: protocols::sewing::movers::AssemblyMover::set_requirements(class utility::vector1<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement>, class std::allocator<class std::shared_ptr<class protocols::sewing::requirements::AssemblyRequirement> > >) –> void

set_segment_distance_cutoff(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, cutoff: int) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_segment_distance_cutoff(unsigned long) –> void

set_segment_vector(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, segvec: pyrosetta.rosetta.protocols.sewing.hashing.SegmentVector) → None

C++: protocols::sewing::movers::AssemblyMover::set_segment_vector(class std::shared_ptr<const class protocols::sewing::hashing::SegmentVector>) –> void

set_segments_from_dssp(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_segments_from_dssp(bool) –> void

set_start_node_vital_segments(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : str) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_start_node_vital_segments(std::string) –> void

set_start_temperature(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, temp: float) → None

C++: protocols::sewing::movers::AssemblyMover::set_start_temperature(double) –> void

set_strict_dssp_changes(self: pyrosetta.rosetta.protocols.sewing.movers.AppendAssemblyMover, : bool) → None

C++: protocols::sewing::movers::AppendAssemblyMover::set_strict_dssp_changes(bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_up_assembly(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.sewing.data_storage.SmartAssembly

C++: protocols::sewing::movers::LigandBindingAssemblyMover::set_up_assembly(class core::pose::Pose &) –> class std::shared_ptr<class protocols::sewing::data_storage::SmartAssembly>

set_up_hashing(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover) → None

C++: protocols::sewing::movers::AssemblyMover::set_up_hashing() –> void

set_window_width(self: pyrosetta.rosetta.protocols.sewing.movers.AssemblyMover, width: int) → None

C++: protocols::sewing::movers::AssemblyMover::set_window_width(unsigned long) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover) -> None

2. show(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMover, output: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::sewing::movers::LigandBindingAssemblyMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator, : pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator) → pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::operator=(const class protocols::sewing::movers::LigandBindingAssemblyMoverCreator &) –> class protocols::sewing::movers::LigandBindingAssemblyMoverCreator &

static class_name() → str

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::class_name() –> std::string

create_mover(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator) → str

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::keyname() const –> std::string

static mover_name() → str

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::mover_name() –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.sewing.movers.LigandBindingAssemblyMoverCreator, : pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None

C++: protocols::sewing::movers::LigandBindingAssemblyMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void