fldsgn¶

Bindings for protocols::fldsgn namespace

class pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR¶

Bases: Mover

add_instruction(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, bi: protocols::forge::build::BuildInstruction) → None¶

add instruction to the manager of this BluePrintBDR (no copy)

BuildInstruction

The allowed amino acid sequence
during design. Only applicable to BuildInstructions like SegmentRebuild and SegmentInsert. Make sure the length of this string matches up properly, and remember to use any special characters, e.g. the insertion character for SegmentInsert

C++: protocols::fldsgn::BluePrintBDR::add_instruction(class std::shared_ptr<class protocols::forge::build::BuildInstruction>) –> void

apply(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

apply defined moves to given Pose

C++: protocols::fldsgn::BluePrintBDR::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::operator=(const class protocols::moves::Mover &) –> class protocols::moves::Mover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) → pyrosetta.rosetta.protocols.moves.Mover¶

clone this object

C++: protocols::fldsgn::BluePrintBDR::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

create_directed_dependency(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, u: protocols::forge::build::BuildInstruction, v: protocols::forge::build::BuildInstruction) → None¶

create directed dependency between two instructions

C++: protocols::fldsgn::BluePrintBDR::create_directed_dependency(class std::shared_ptr<class protocols::forge::build::BuildInstruction>, class std::shared_ptr<class protocols::forge::build::BuildInstruction>) –> void

dump_pdb_when_fail(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, dump_pdb_when_fail: str) → None¶

dump pdb when this protocol failed

C++: protocols::fldsgn::BluePrintBDR::dump_pdb_when_fail(const std::string &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) → pyrosetta.rosetta.protocols.moves.Mover¶

create this type of object

C++: protocols::fldsgn::BluePrintBDR::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) → str¶: C++: protocols::fldsgn::BluePrintBDR::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

instruction_size(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) → int¶

/

C++: protocols::fldsgn::BluePrintBDR::instruction_size() const –> unsigned long

is_initialized(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) → bool¶

define secondary structrue by blueprint

C++: protocols::fldsgn::BluePrintBDR::is_initialized() const –> bool

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

loop_mover_str(*args, **kwargs)¶

Overloaded function.

loop_mover_str(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> str

the loop mover string to use during centroid build

(default “RemodelLoopMover”)

set to either a string the create_loop_mover() LoopMoverFactory: recognizes or the “RemodelLoopMover”

C++: protocols::fldsgn::BluePrintBDR::loop_mover_str() const –> const std::string &

loop_mover_str(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, loop_mover_str: str) -> None

the loop mover string to use during centroid build

set to either a string the create_loop_mover() LoopMoverFactory
recognizes or the “RemodelLoopMover”

C++: protocols::fldsgn::BluePrintBDR::loop_mover_str(const std::string &) –> void

max_linear_chainbreak(*args, **kwargs)¶

Overloaded function.

max_linear_chainbreak(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> float

the maximum allowed linear chainbreak (default 0.07)

C++: protocols::fldsgn::BluePrintBDR::max_linear_chainbreak() const –> double

max_linear_chainbreak(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, threshold: float) -> None

the maximum allowed linear chainbreak

C++: protocols::fldsgn::BluePrintBDR::max_linear_chainbreak(const double) –> void

static mover_name() → str¶: C++: protocols::fldsgn::BluePrintBDR::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

num_fragpick(*args, **kwargs)¶

Overloaded function.

num_fragpick(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> int

the number of fragments to pick at each position

C++: protocols::fldsgn::BluePrintBDR::num_fragpick() const –> unsigned long

num_fragpick(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, num: int) -> None

the number of fragments to pick at each position

C++: protocols::fldsgn::BluePrintBDR::num_fragpick(const unsigned long) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

parse xml file

C++: protocols::fldsgn::BluePrintBDR::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::BluePrintBDR::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

scorefunction(*args, **kwargs)¶

Overloaded function.

scorefunction(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> pyrosetta.rosetta.core.scoring.ScoreFunction

the centroid level score function, default “fldsgn_cen”

C++: protocols::fldsgn::BluePrintBDR::scorefunction() const –> const class core::scoring::ScoreFunction &

scorefunction(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, sfx: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

set the centroid level score function

C++: protocols::fldsgn::BluePrintBDR::scorefunction(const class core::scoring::ScoreFunction &) –> void

scorefunction(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, sfx: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

set the centroid level score function

C++: protocols::fldsgn::BluePrintBDR::scorefunction(class std::shared_ptr<class core::scoring::ScoreFunction>) –> void

set_blueprint(*args, **kwargs)¶

Overloaded function.

set_blueprint(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, filename: str) -> None

set blueprint file by filename

C++: protocols::fldsgn::BluePrintBDR::set_blueprint(const std::string &) –> void

set_blueprint(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, blp: protocols::parser::BluePrint) -> None

set blueprint file

C++: protocols::fldsgn::BluePrintBDR::set_blueprint(const class std::shared_ptr<class protocols::parser::BluePrint> &) –> void

set_constraint_file(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, constraint_file: str) → None¶

set constraint file

C++: protocols::fldsgn::BluePrintBDR::set_constraint_file(const std::string &) –> void

set_constraints_NtoC(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, weight: float) → None¶

set constraints between N- and C- Ca atoms

C++: protocols::fldsgn::BluePrintBDR::set_constraints_NtoC(const double &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_rcgs(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, rcgs: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_forge_remodel_RemodelConstraintGenerator_t) → None¶

set list of remodel constraint generators

C++: protocols::fldsgn::BluePrintBDR::set_rcgs(const class utility::vector1<class std::shared_ptr<class protocols::forge::remodel::RemodelConstraintGenerator>, class std::allocator<class std::shared_ptr<class protocols::forge::remodel::RemodelConstraintGenerator> > > &) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

ss_from_blueprint(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, flag: bool) → None¶

define secondary structrue by blueprint

C++: protocols::fldsgn::BluePrintBDR::ss_from_blueprint(const bool) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_abego_bias(*args, **kwargs)¶

Overloaded function.

use_abego_bias(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> bool

use abego biased fragments when building the loop? (default false)

C++: protocols::fldsgn::BluePrintBDR::use_abego_bias() const –> bool

use_abego_bias(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, flag: bool) -> None

use abego biased fragments when building the loop? (default false)

C++: protocols::fldsgn::BluePrintBDR::use_abego_bias(const bool) –> void

use_fullmer(*args, **kwargs)¶

Overloaded function.

use_fullmer(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> bool

use full-mer fragments when building the loop? (default false)

C++: protocols::fldsgn::BluePrintBDR::use_fullmer() const –> bool

use_fullmer(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, flag: bool) -> None

use full-mer fragments when building the loop?

C++: protocols::fldsgn::BluePrintBDR::use_fullmer(const bool) –> void

use_sequence_bias(*args, **kwargs)¶

Overloaded function.

use_sequence_bias(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR) -> bool

use sequence biased fragments when building the loop? (default false)

C++: protocols::fldsgn::BluePrintBDR::use_sequence_bias() const –> bool

use_sequence_bias(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDR, flag: bool) -> None

use sequence biased fragments when building the loop? (default false)

C++: protocols::fldsgn::BluePrintBDR::use_sequence_bias(const bool) –> void

class pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator, : pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator) → pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator¶: C++: protocols::fldsgn::BluePrintBDRCreator::operator=(const class protocols::fldsgn::BluePrintBDRCreator &) –> class protocols::fldsgn::BluePrintBDRCreator &

create_mover(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::BluePrintBDRCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator) → str¶: C++: protocols::fldsgn::BluePrintBDRCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fldsgn.BluePrintBDRCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::BluePrintBDRCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fldsgn.CircularPermutation¶

Bases: Mover

apply(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

apply defined moves to given Pose

C++: protocols::fldsgn::CircularPermutation::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::operator=(const class protocols::moves::Mover &) –> class protocols::moves::Mover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation) → pyrosetta.rosetta.protocols.moves.Mover¶

clone this object

C++: protocols::fldsgn::CircularPermutation::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation) → pyrosetta.rosetta.protocols.moves.Mover¶

create this type of object

C++: protocols::fldsgn::CircularPermutation::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation) → str¶: C++: protocols::fldsgn::CircularPermutation::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str¶: C++: protocols::fldsgn::CircularPermutation::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

new_terminal_pos(*args, **kwargs)¶

Overloaded function.

new_terminal_pos(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation) -> int

C++: protocols::fldsgn::CircularPermutation::new_terminal_pos() const –> unsigned long

new_terminal_pos(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation, s: int) -> None

C++: protocols::fldsgn::CircularPermutation::new_terminal_pos(const unsigned long) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

parse xml file

C++: protocols::fldsgn::CircularPermutation::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::CircularPermutation::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

split_chains(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation, pose: pyrosetta.rosetta.core.pose.Pose, pos: pyrosetta.rosetta.utility.vector1_unsigned_long) → None¶: C++: protocols::fldsgn::CircularPermutation::split_chains(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

which_chain(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutation, s: int, pose: pyrosetta.rosetta.core.pose.Pose) → int¶: C++: protocols::fldsgn::CircularPermutation::which_chain(const unsigned long, const class core::pose::Pose &) const –> unsigned long

class pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator, : pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator) → pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator¶: C++: protocols::fldsgn::CircularPermutationCreator::operator=(const class protocols::fldsgn::CircularPermutationCreator &) –> class protocols::fldsgn::CircularPermutationCreator &

create_mover(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::CircularPermutationCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator) → str¶: C++: protocols::fldsgn::CircularPermutationCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fldsgn.CircularPermutationCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::CircularPermutationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fldsgn.MatchResidues¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, : pyrosetta.rosetta.protocols.fldsgn.MatchResidues) → pyrosetta.rosetta.protocols.fldsgn.MatchResidues¶: C++: protocols::fldsgn::MatchResidues::operator=(const class protocols::fldsgn::MatchResidues &) –> class protocols::fldsgn::MatchResidues &

compute(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, best_fit: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::compute(const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

compute_comb(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, comb: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::compute_comb(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

parse_my_tag(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fldsgn::MatchResidues::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

static provide_attributes_and_subelements(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, ssl: utility::tag::XMLSchemaSimpleSubelementList) → None¶: C++: protocols::fldsgn::MatchResidues::provide_attributes_and_subelements(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, class utility::tag::XMLSchemaSimpleSubelementList &) –> void

superimpose_comb(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, comb: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::superimpose_comb(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

threshold(*args, **kwargs)¶

Overloaded function.

threshold(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues) -> float

C++: protocols::fldsgn::MatchResidues::threshold() const –> double

threshold(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, value: float) -> None

C++: protocols::fldsgn::MatchResidues::threshold(double) –> void

class pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover¶

Bases: MatchResidues, Mover

apply(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::fldsgn::MatchResiduesMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover, : pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover) → pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover¶: C++: protocols::fldsgn::MatchResiduesMover::operator=(const class protocols::fldsgn::MatchResiduesMover &) –> class protocols::fldsgn::MatchResiduesMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::MatchResiduesMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

compute(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, best_fit: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::compute(const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

compute_comb(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, comb: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::compute_comb(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::MatchResiduesMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover) → str¶: C++: protocols::fldsgn::MatchResiduesMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str¶: C++: protocols::fldsgn::MatchResiduesMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fldsgn::MatchResiduesMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

static provide_attributes_and_subelements(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t, ssl: utility::tag::XMLSchemaSimpleSubelementList) → None¶: C++: protocols::fldsgn::MatchResidues::provide_attributes_and_subelements(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &, class utility::tag::XMLSchemaSimpleSubelementList &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::MatchResiduesMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

superimpose_comb(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, pose: pyrosetta.rosetta.core.pose.Pose, comb: pyrosetta.rosetta.utility.vector1_unsigned_long) → float¶: C++: protocols::fldsgn::MatchResidues::superimpose_comb(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> double

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

threshold(*args, **kwargs)¶

Overloaded function.

threshold(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues) -> float

C++: protocols::fldsgn::MatchResidues::threshold() const –> double

threshold(self: pyrosetta.rosetta.protocols.fldsgn.MatchResidues, value: float) -> None

C++: protocols::fldsgn::MatchResidues::threshold(double) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator, : pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator) → pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator¶: C++: protocols::fldsgn::MatchResiduesMoverCreator::operator=(const class protocols::fldsgn::MatchResiduesMoverCreator &) –> class protocols::fldsgn::MatchResiduesMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::MatchResiduesMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator) → str¶: C++: protocols::fldsgn::MatchResiduesMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fldsgn.MatchResiduesMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::MatchResiduesMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator¶

Bases: StructureDependentCalculator

assign(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, : pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator) → pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator¶: C++: protocols::fldsgn::NcontactsCalculator::operator=(const class protocols::fldsgn::NcontactsCalculator &) –> class protocols::fldsgn::NcontactsCalculator &

clone(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator) → pyrosetta.rosetta.core.pose.metrics.PoseMetricCalculator¶

make clone

C++: protocols::fldsgn::NcontactsCalculator::clone() const –> class std::shared_ptr<class core::pose::metrics::PoseMetricCalculator>

contact_distance(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, r: float) → None¶

set contact distance

C++: protocols::fldsgn::NcontactsCalculator::contact_distance(const double) –> void

get(*args, **kwargs)¶

Overloaded function.

get(self: pyrosetta.rosetta.core.pose.metrics.StructureDependentCalculator, key: str, val: pyrosetta.rosetta.basic.MetricValueBase, this_pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: core::pose::metrics::StructureDependentCalculator::get(const std::string &, class basic::MetricValueBase &, const class core::pose::Pose &) –> void

get(self: pyrosetta.rosetta.core.pose.metrics.StructureDependentCalculator, key: str, this_pose: pyrosetta.rosetta.core.pose.Pose) -> str

C++: core::pose::metrics::StructureDependentCalculator::get(const std::string &, const class core::pose::Pose &) –> std::string

ignore_loops(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, b: bool) → None¶

ignore loops for calculation

C++: protocols::fldsgn::NcontactsCalculator::ignore_loops(const bool) –> void

ignore_same_sheet(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, b: bool) → None¶

ignore residue pairs of which residue belong to same beta sheet ( default true )

C++: protocols::fldsgn::NcontactsCalculator::ignore_same_sheet(const bool) –> void

ignore_same_sselement(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, b: bool) → None¶

ignore residue pairs of which residue belong to same ss element

C++: protocols::fldsgn::NcontactsCalculator::ignore_same_sselement(const bool) –> void

notify_energy_change(self: pyrosetta.rosetta.core.pose.metrics.PoseMetricCalculator) → None¶: C++: core::pose::metrics::PoseMetricCalculator::notify_energy_change() –> void

notify_structure_change(self: pyrosetta.rosetta.core.pose.metrics.StructureDependentCalculator) → None¶: C++: core::pose::metrics::StructureDependentCalculator::notify_structure_change() –> void

use_only_calpha(self: pyrosetta.rosetta.protocols.fldsgn.NcontactsCalculator, b: bool) → None¶

use only calpha for calculation

C++: protocols::fldsgn::NcontactsCalculator::use_only_calpha(const bool) –> void

class pyrosetta.rosetta.protocols.fldsgn.ResiduePair¶

Bases: pybind11_object

property orientation¶

class pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator¶

Bases: ConstraintGenerator

apply(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t¶: C++: protocols::fldsgn::SheetConstraintGenerator::apply(const class core::pose::Pose &) const –> class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

assign(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, : pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator) → pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator¶: C++: protocols::fldsgn::SheetConstraintGenerator::operator=(const class protocols::fldsgn::SheetConstraintGenerator &) –> class protocols::fldsgn::SheetConstraintGenerator &

static attributes_for_sheet_constraint_generator(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::fldsgn::SheetConstraintGenerator::attributes_for_sheet_constraint_generator(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static class_name() → str¶: C++: protocols::fldsgn::SheetConstraintGenerator::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator) → pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator¶: C++: protocols::fldsgn::SheetConstraintGenerator::clone() const –> class std::shared_ptr<class protocols::constraint_generator::ConstraintGenerator>

id(self: pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator) → str¶: C++: protocols::constraint_generator::ConstraintGenerator::id() const –> const std::string &

initialize_from_blueprint(*args, **kwargs)¶

Overloaded function.

initialize_from_blueprint(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, blueprint_file: str) -> None

initialize from a blueprint

C++: protocols::fldsgn::SheetConstraintGenerator::initialize_from_blueprint(const std::string &) –> void

initialize_from_blueprint(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, bp: protocols::parser::BluePrint) -> None

C++: protocols::fldsgn::SheetConstraintGenerator::initialize_from_blueprint(class std::shared_ptr<const class protocols::parser::BluePrint>) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

parses XML tag – calls protected parse_tag() function

C++: protocols::constraint_generator::ConstraintGenerator::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator, citations: pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList.

This allows the constraint generator to provide citations for itself and for any modules that it invokes.

This base class version does nothing. It should be overridden by derived classes.

Vikram K. Mulligan (vmulligan.org).

C++: protocols::constraint_generator::ConstraintGenerator::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::SheetConstraintGenerator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_angle_tolerance(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, angle_tolerance: float) → None¶

set the flat-bottom tolerance for the backbone angle between strands for each pair: This is N1-C1-C2 and N2-C2-C1 for parallel sheets, and N1-C1-N2/N2-C2-N1 for antiparallel.

C++: protocols::fldsgn::SheetConstraintGenerator::set_angle_tolerance(const double) –> void

set_bb_dihedral_tolerance(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, dihedral_tolerance: float) → None¶

set the flat-bottom tolerance for the backbone dihedrals (0=optimal): Dihedral 1 = O1-N1-C1-C2, Dihedral 2 = O2-N2-C2-C1

C++: protocols::fldsgn::SheetConstraintGenerator::set_bb_dihedral_tolerance(const double) –> void

set_cacb_dihedral_tolerance(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, dihedral_tolerance: float) → None¶

set the flat-bottom tolerance for the Cb1-Ca1-Ca2-Cb2 dihedral angle (0 = optimal)

C++: protocols::fldsgn::SheetConstraintGenerator::set_cacb_dihedral_tolerance(const double) –> void

set_constrain_bb_angle(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, constrain_angle: bool) → None¶

sets whether we should constrain bb angle

C++: protocols::fldsgn::SheetConstraintGenerator::set_constrain_bb_angle(const bool) –> void

set_constrain_bb_cacb_dihedral(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, constrain_dihedral: bool) → None¶

sets whether we should constrain cb_ca_ca_cb dihedrals

C++: protocols::fldsgn::SheetConstraintGenerator::set_constrain_bb_cacb_dihedral(const bool) –> void

set_constrain_bb_dihedral(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, constrain_dihedral: bool) → None¶

sets whether we should constrain bb dihedrals

C++: protocols::fldsgn::SheetConstraintGenerator::set_constrain_bb_dihedral(const bool) –> void

set_constrain_ca_ca_dist(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, constrain_dist_only: bool) → None¶

sets whether we should constrain distance only, and not generate dihedral and angle constraints

C++: protocols::fldsgn::SheetConstraintGenerator::set_constrain_ca_ca_dist(const bool) –> void

set_distance(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, dist: float) → None¶

set the maximum Ca-Ca distance between paired residues

C++: protocols::fldsgn::SheetConstraintGenerator::set_distance(const double) –> void

set_distance_tolerance(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, dist_tol: float) → None¶

sets the tolerance for the func to all atom pair constraints

C++: protocols::fldsgn::SheetConstraintGenerator::set_distance_tolerance(const double) –> void

set_flat_bottom_constraints(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, flat_csts: bool) → None¶

if set, a square-well, “flat bottom” function will be used for the constraints.: Otherwise, harmonic constraints will be used.

C++: protocols::fldsgn::SheetConstraintGenerator::set_flat_bottom_constraints(const bool) –> void

set_id(self: pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator, id: str) → None¶: C++: protocols::constraint_generator::ConstraintGenerator::set_id(const std::string &) –> void

set_secstruct(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, ss: str) → None¶

sets the secondary structure to be used for constraint generation

C++: protocols::fldsgn::SheetConstraintGenerator::set_secstruct(const std::string &) –> void

set_strand_pairs(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, spairs: str) → None¶

sets the strand pair string to be used for constraint generation (e.g. “2-3.P.1” ): means strands 2 and 3 are paired in a parallel orientation with register shift of 1

C++: protocols::fldsgn::SheetConstraintGenerator::set_strand_pairs(const std::string &) –> void

set_use_dssp(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, use_dssp: bool) → None¶

If true, and no secstruct is specified, DSSP will be used to determine the pose: secondary structure. If false (and no secstruct is specified), the pose secondary structure will be directly used.

Desired value

C++: protocols::fldsgn::SheetConstraintGenerator::set_use_dssp(const bool) –> void

set_weight(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGenerator, coef: float) → None¶

set the weight of the sheet constraints

C++: protocols::fldsgn::SheetConstraintGenerator::set_weight(const double) –> void

class pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator¶

Bases: ConstraintGeneratorCreator

assign(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator, : pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator) → pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator¶: C++: protocols::fldsgn::SheetConstraintGeneratorCreator::operator=(const class protocols::fldsgn::SheetConstraintGeneratorCreator &) –> class protocols::fldsgn::SheetConstraintGeneratorCreator &

static constraint_generator_name() → str¶: C++: protocols::fldsgn::SheetConstraintGeneratorCreator::constraint_generator_name() –> std::string

create_constraint_generator(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator) → pyrosetta.rosetta.protocols.constraint_generator.ConstraintGenerator¶: C++: protocols::fldsgn::SheetConstraintGeneratorCreator::create_constraint_generator() const –> class std::shared_ptr<class protocols::constraint_generator::ConstraintGenerator>

keyname(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator) → str¶: C++: protocols::fldsgn::SheetConstraintGeneratorCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fldsgn.SheetConstraintGeneratorCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::SheetConstraintGeneratorCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator¶

Bases: RemodelConstraintGenerator

Remodel constraint generator for adding sheet constraints

add_remodel_constraints_to_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::add_remodel_constraints_to_pose(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

generates constraints and adds them to the pose

C++: protocols::forge::remodel::RemodelConstraintGenerator::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator, : pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator) → pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::operator=(const class protocols::fldsgn::SheetRemodelConstraintGenerator &) –> class protocols::fldsgn::SheetRemodelConstraintGenerator &

static attributes_for_remodel_constraint_generator(: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::attributes_for_remodel_constraint_generator(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

constraints(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::constraints() const –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_remodel_constraints(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::generate_remodel_constraints(const class core::pose::Pose &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator) → str¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → str¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::id() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, : pyrosetta.rosetta.core.pose.Pose) → None¶

Pose-specific setup routines go here

C++: protocols::forge::remodel::RemodelConstraintGenerator::init(const class core::pose::Pose &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static lookup_stored_constraints(id: str) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::lookup_stored_constraints(const std::string &) –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

static mover_name() → str¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGenerator, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::SheetRemodelConstraintGenerator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

remove_remodel_constraints_from_pose(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::remove_remodel_constraints_from_pose(class core::pose::Pose &) const –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.core.id.SequenceMapping¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::seqmap() const –> class std::shared_ptr<const class core::id::SequenceMapping>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_id(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, id: str) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::set_id(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_seqmap(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, seqmap: pyrosetta.rosetta.core.id.SequenceMapping) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::set_seqmap(class std::shared_ptr<const class core::id::SequenceMapping>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator, vlb: pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t) → None¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::set_vlb(class std::weak_ptr<class protocols::forge::components::VarLengthBuild>) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

vlb(self: pyrosetta.rosetta.protocols.forge.remodel.RemodelConstraintGenerator) → pyrosetta.rosetta.std.weak_ptr_protocols_forge_components_VarLengthBuild_t¶: C++: protocols::forge::remodel::RemodelConstraintGenerator::vlb() const –> class std::weak_ptr<class protocols::forge::components::VarLengthBuild>

class pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator, : pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator) → pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator¶: C++: protocols::fldsgn::SheetRemodelConstraintGeneratorCreator::operator=(const class protocols::fldsgn::SheetRemodelConstraintGeneratorCreator &) –> class protocols::fldsgn::SheetRemodelConstraintGeneratorCreator &

create_mover(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::fldsgn::SheetRemodelConstraintGeneratorCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator) → str¶: C++: protocols::fldsgn::SheetRemodelConstraintGeneratorCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fldsgn.SheetRemodelConstraintGeneratorCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fldsgn::SheetRemodelConstraintGeneratorCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void