symmetry

Functions:

• pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit
• pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit_pdb_info
• pyrosetta.rosetta.core.pose.symmetry.find_new_symmetric_jump_residues
• pyrosetta.rosetta.core.pose.symmetry.find_symmetric_basejump_anchor
• pyrosetta.rosetta.core.pose.symmetry.get_asymmetric_pose_copy_from_symmetric_pose
• pyrosetta.rosetta.core.pose.symmetry.get_buildingblock_and_neighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_component_lower_bound
• pyrosetta.rosetta.core.pose.symmetry.get_component_of_residue
• pyrosetta.rosetta.core.pose.symmetry.get_component_upper_bound
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_resis
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subs
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_resis
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subs
• pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_components
• pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_subunits
• pyrosetta.rosetta.core.pose.symmetry.get_neighbor_resis
• pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subs
• pyrosetta.rosetta.core.pose.symmetry.get_nres_asymmetric_unit
• pyrosetta.rosetta.core.pose.symmetry.get_resis
• pyrosetta.rosetta.core.pose.symmetry.get_resnum_to_subunit_component
• pyrosetta.rosetta.core.pose.symmetry.get_subpose
• pyrosetta.rosetta.core.pose.symmetry.get_subunit_name_to_component
• pyrosetta.rosetta.core.pose.symmetry.get_sym_aware_jump_num
• pyrosetta.rosetta.core.pose.symmetry.get_symdof_subunits
• pyrosetta.rosetta.core.pose.symmetry.get_symm_axis
• pyrosetta.rosetta.core.pose.symmetry.intracomponent_contact
• pyrosetta.rosetta.core.pose.symmetry.is_mirror_symmetric
• pyrosetta.rosetta.core.pose.symmetry.is_multicomponent
• pyrosetta.rosetta.core.pose.symmetry.is_singlecomponent
• pyrosetta.rosetta.core.pose.symmetry.is_symmetric
• pyrosetta.rosetta.core.pose.symmetry.jump_num_sym_dof
• pyrosetta.rosetta.core.pose.symmetry.make_asymmetric_pose
• pyrosetta.rosetta.core.pose.symmetry.make_residue_mask_symmetric
• pyrosetta.rosetta.core.pose.symmetry.make_symmetric_movemap
• pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pdb_info
• pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pose
• pyrosetta.rosetta.core.pose.symmetry.partition_by_symm_jumps
• pyrosetta.rosetta.core.pose.symmetry.rotate_anchor_to_x_axis
• pyrosetta.rosetta.core.pose.symmetry.sealed_symmetric_fold_tree
• pyrosetta.rosetta.core.pose.symmetry.set_asymm_unit_fold_tree
• pyrosetta.rosetta.core.pose.symmetry.sym_dof_jump_num
• pyrosetta.rosetta.core.pose.symmetry.sym_dof_names
• pyrosetta.rosetta.core.pose.symmetry.symmetric_components
• pyrosetta.rosetta.core.pose.symmetry.symmetrize_fold_tree
• pyrosetta.rosetta.core.pose.symmetry.symmetry_info

Bindings for core::pose::symmetry namespace

pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit(*args, **kwargs)

Overloaded function.

1. extract_asymmetric_unit(pose_in: pyrosetta.rosetta.core.pose.Pose, pose_out: pyrosetta.rosetta.core.pose.Pose) -> None

2. extract_asymmetric_unit(pose_in: pyrosetta.rosetta.core.pose.Pose, pose_out: pyrosetta.rosetta.core.pose.Pose, with_virtual_atoms: bool) -> None

extract the asu from a pose… unlike previous function symmetric clones are thrown out

Symmetric input pose containing the asymmetric subunit of interest

Asymmetric subunit will be placed into this object

If true, virtual atoms related to symmetry will be kept with the asymmetric subunit.

If false, virtual atoms will be removed (default=true)

C++: core::pose::symmetry::extract_asymmetric_unit(const class core::pose::Pose &, class core::pose::Pose &, const bool) –> void

pyrosetta.rosetta.core.pose.symmetry.extract_asymmetric_unit_pdb_info(pose: pyrosetta.rosetta.core.pose.Pose, pdb_info_src: pyrosetta.rosetta.core.pose.PDBInfo, pdb_info_target: pyrosetta.rosetta.core.pose.PDBInfo) → None

C++: core::pose::symmetry::extract_asymmetric_unit_pdb_info(const class core::pose::Pose &, class std::shared_ptr<const class core::pose::PDBInfo>, class std::shared_ptr<class core::pose::PDBInfo>) –> void

pyrosetta.rosetta.core.pose.symmetry.find_new_symmetric_jump_residues(pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: core::pose::symmetry::find_new_symmetric_jump_residues(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.find_symmetric_basejump_anchor(pose: pyrosetta.rosetta.core.pose.Pose) → int

C++: core::pose::symmetry::find_symmetric_basejump_anchor(class core::pose::Pose &) –> int

pyrosetta.rosetta.core.pose.symmetry.get_asymmetric_pose_copy_from_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_asymmetric_pose_copy_from_symmetric_pose(const class core::pose::Pose &) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_buildingblock_and_neighbor_subs(pose_in: pyrosetta.rosetta.core.pose.Pose, intra_subs: pyrosetta.rosetta.utility.vector1_unsigned_long) → pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_buildingblock_and_neighbor_subs(const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> >) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_component_lower_bound(pose: pyrosetta.rosetta.core.pose.Pose, c: str) → int

C++: core::pose::symmetry::get_component_lower_bound(const class core::pose::Pose &, char) –> unsigned long

pyrosetta.rosetta.core.pose.symmetry.get_component_of_residue(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → str

C++: core::pose::symmetry::get_component_of_residue(const class core::pose::Pose &, unsigned long) –> char

pyrosetta.rosetta.core.pose.symmetry.get_component_upper_bound(pose: pyrosetta.rosetta.core.pose.Pose, c: str) → int

C++: core::pose::symmetry::get_component_upper_bound(const class core::pose::Pose &, char) –> unsigned long

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_resis(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_full_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_full_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_and_neighbor_subs(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_full_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_full_intracomponent_and_neighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_resis(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_full_intracomponent_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_full_intracomponent_neighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_full_intracomponent_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_full_intracomponent_neighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_neighbor_subs(*args, **kwargs)

Overloaded function.

1. get_full_intracomponent_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_full_intracomponent_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_full_intracomponent_neighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_full_intracomponent_resis(const class core::pose::Pose &, const std::string &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) → pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_full_intracomponent_subpose(const class core::pose::Pose &, const std::string &) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_full_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_full_intracomponent_subs(const class core::pose::Pose &, const std::string &) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_resis(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_interneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_intracomponent_and_interneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_interneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_intracomponent_and_interneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_interneighbor_subs(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_interneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_intracomponent_and_interneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_interneighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_resis(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_intraneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_intracomponent_and_intraneighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_intraneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_intracomponent_and_intraneighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_intraneighbor_subs(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_intraneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_intracomponent_and_intraneighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_intraneighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_resis(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_intracomponent_and_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_and_neighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_intracomponent_and_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_and_neighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_and_neighbor_subs(*args, **kwargs)

Overloaded function.

1. get_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_intracomponent_and_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_and_neighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_resis(*args, **kwargs)

Overloaded function.

1. get_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_intracomponent_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_intracomponent_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subpose(*args, **kwargs)

Overloaded function.

1. get_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_intracomponent_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_intracomponent_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_intracomponent_subs(*args, **kwargs)

Overloaded function.

1. get_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_intracomponent_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_intracomponent_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_components(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_char

C++: core::pose::symmetry::get_jump_name_to_components(const class core::pose::Pose &, const std::string &) –> const class utility::vector1<char, class std::allocator<char> > &

pyrosetta.rosetta.core.pose.symmetry.get_jump_name_to_subunits(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_jump_name_to_subunits(const class core::pose::Pose &, const std::string &) –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_resis(*args, **kwargs)

Overloaded function.

1. get_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_unsigned_long

2. get_neighbor_resis(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_neighbor_resis(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subpose(*args, **kwargs)

Overloaded function.

1. get_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.core.pose.Pose

2. get_neighbor_subpose(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_neighbor_subpose(const class core::pose::Pose &, const std::string &, double) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_neighbor_subs(*args, **kwargs)

Overloaded function.

1. get_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> pyrosetta.rosetta.utility.vector1_std_string

2. get_neighbor_subs(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::get_neighbor_subs(const class core::pose::Pose &, const std::string &, double) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.get_nres_asymmetric_unit(pose: pyrosetta.rosetta.core.pose.Pose) → int

Convenience function for the number of residues in a subunit.

Will return the total size for an asymmetric pose

C++: core::pose::symmetry::get_nres_asymmetric_unit(const class core::pose::Pose &) –> unsigned long

pyrosetta.rosetta.core.pose.symmetry.get_resis(pose: pyrosetta.rosetta.core.pose.Pose, subs: pyrosetta.rosetta.utility.vector1_std_string) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_resis(const class core::pose::Pose &, class utility::vector1<std::string, class std::allocator<std::string > >) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_resnum_to_subunit_component(pose: pyrosetta.rosetta.core.pose.Pose, resnum: int) → str

C++: core::pose::symmetry::get_resnum_to_subunit_component(const class core::pose::Pose &, const unsigned long &) –> std::string

pyrosetta.rosetta.core.pose.symmetry.get_subpose(pose: pyrosetta.rosetta.core.pose.Pose, subs: pyrosetta.rosetta.utility.vector1_std_string) → pyrosetta.rosetta.core.pose.Pose

C++: core::pose::symmetry::get_subpose(const class core::pose::Pose &, class utility::vector1<std::string, class std::allocator<std::string > >) –> class core::pose::Pose

pyrosetta.rosetta.core.pose.symmetry.get_subunit_name_to_component(pose: pyrosetta.rosetta.core.pose.Pose, vname: str) → str

C++: core::pose::symmetry::get_subunit_name_to_component(const class core::pose::Pose &, const std::string &) –> char

pyrosetta.rosetta.core.pose.symmetry.get_sym_aware_jump_num(pose: pyrosetta.rosetta.core.pose.Pose, jump_num: int) → int

C++: core::pose::symmetry::get_sym_aware_jump_num(const class core::pose::Pose &, unsigned long) –> int

pyrosetta.rosetta.core.pose.symmetry.get_symdof_subunits(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::pose::symmetry::get_symdof_subunits(const class core::pose::Pose &, const std::string &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.core.pose.symmetry.get_symm_axis(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.numeric.xyzVector_double_t

C++: core::pose::symmetry::get_symm_axis(class core::pose::Pose &) –> class numeric::xyzVector<double>

pyrosetta.rosetta.core.pose.symmetry.intracomponent_contact(*args, **kwargs)

Overloaded function.

1. intracomponent_contact(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str) -> bool

2. intracomponent_contact(pose: pyrosetta.rosetta.core.pose.Pose, sym_dof_name: str, contact_dist: float) -> bool

C++: core::pose::symmetry::intracomponent_contact(const class core::pose::Pose &, const std::string &, double) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_mirror_symmetric(pose: pyrosetta.rosetta.core.pose.Pose) → bool

C++: core::pose::symmetry::is_mirror_symmetric(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_multicomponent(pose: pyrosetta.rosetta.core.pose.Pose) → bool

C++: core::pose::symmetry::is_multicomponent(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_singlecomponent(pose: pyrosetta.rosetta.core.pose.Pose) → bool

C++: core::pose::symmetry::is_singlecomponent(const class core::pose::Pose &) –> bool

pyrosetta.rosetta.core.pose.symmetry.is_symmetric(*args, **kwargs)

Overloaded function.

1. is_symmetric(pose: pyrosetta.rosetta.core.pose.Pose) -> bool

C++: core::pose::symmetry::is_symmetric(const class core::pose::Pose &) –> bool

2. is_symmetric(energies: pyrosetta.rosetta.core.scoring.Energies) -> bool

C++: core::pose::symmetry::is_symmetric(const class core::scoring::Energies &) –> bool

pyrosetta.rosetta.core.pose.symmetry.jump_num_sym_dof(pose: pyrosetta.rosetta.core.pose.Pose, jnum: int) → str

C++: core::pose::symmetry::jump_num_sym_dof(const class core::pose::Pose &, const unsigned long &) –> std::string

pyrosetta.rosetta.core.pose.symmetry.make_asymmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: core::pose::symmetry::make_asymmetric_pose(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_residue_mask_symmetric(p: pyrosetta.rosetta.core.pose.Pose, msk: pyrosetta.rosetta.utility.vector1_bool) → None

C++: core::pose::symmetry::make_residue_mask_symmetric(const class core::pose::Pose &, class utility::vector1<bool, class std::allocator<bool> > &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_movemap(pose: pyrosetta.rosetta.core.pose.Pose, movemap: pyrosetta.rosetta.core.kinematics.MoveMap) → None

C++: core::pose::symmetry::make_symmetric_movemap(const class core::pose::Pose &, class core::kinematics::MoveMap &) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pdb_info(*args, **kwargs)

Overloaded function.

1. make_symmetric_pdb_info(pose: pyrosetta.rosetta.core.pose.Pose, pdb_info_src: pyrosetta.rosetta.core.pose.PDBInfo, pdb_info_target: pyrosetta.rosetta.core.pose.PDBInfo) -> None

2. make_symmetric_pdb_info(pose: pyrosetta.rosetta.core.pose.Pose, pdb_info_src: pyrosetta.rosetta.core.pose.PDBInfo, pdb_info_target: pyrosetta.rosetta.core.pose.PDBInfo, keep_pdb_info_labels: bool) -> None

C++: core::pose::symmetry::make_symmetric_pdb_info(const class core::pose::Pose &, class std::shared_ptr<class core::pose::PDBInfo>, class std::shared_ptr<class core::pose::PDBInfo>, bool) –> void

pyrosetta.rosetta.core.pose.symmetry.make_symmetric_pose(*args, **kwargs)

Overloaded function.

1. make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmetry_info: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, class core::conformation::symmetry::SymmetryInfo) –> void

2. make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmdata: pyrosetta.rosetta.core.conformation.symmetry.SymmData) -> None

3. make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmdata: pyrosetta.rosetta.core.conformation.symmetry.SymmData, keep_pdb_info_labels: bool) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, class core::conformation::symmetry::SymmData &, bool) –> void

4. make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose) -> None

5. make_symmetric_pose(pose: pyrosetta.rosetta.core.pose.Pose, symmdef_file: str) -> None

C++: core::pose::symmetry::make_symmetric_pose(class core::pose::Pose &, std::string) –> void

pyrosetta.rosetta.core.pose.symmetry.partition_by_symm_jumps(jump_numbers: pyrosetta.rosetta.utility.vector1_int, ft: pyrosetta.rosetta.core.kinematics.FoldTree, symm_info: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo, partner1: pyrosetta.rosetta.ObjexxFCL.FArray1D_bool_t) → None

C++: core::pose::symmetry::partition_by_symm_jumps(class utility::vector1<int, class std::allocator<int> >, const class core::kinematics::FoldTree &, class std::shared_ptr<const class core::conformation::symmetry::SymmetryInfo>, class ObjexxFCL::FArray1D<bool> &) –> void

pyrosetta.rosetta.core.pose.symmetry.rotate_anchor_to_x_axis(pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: core::pose::symmetry::rotate_anchor_to_x_axis(class core::pose::Pose &) –> void

pyrosetta.rosetta.core.pose.symmetry.sealed_symmetric_fold_tree(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.kinematics.FoldTree

C++: core::pose::symmetry::sealed_symmetric_fold_tree(class core::pose::Pose &) –> class core::kinematics::FoldTree

pyrosetta.rosetta.core.pose.symmetry.set_asymm_unit_fold_tree(p: pyrosetta.rosetta.core.pose.Pose, f: pyrosetta.rosetta.core.kinematics.FoldTree) → None

C++: core::pose::symmetry::set_asymm_unit_fold_tree(class core::pose::Pose &, const class core::kinematics::FoldTree &) –> void

pyrosetta.rosetta.core.pose.symmetry.sym_dof_jump_num(pose: pyrosetta.rosetta.core.pose.Pose, jname: str) → int

C++: core::pose::symmetry::sym_dof_jump_num(const class core::pose::Pose &, const std::string &) –> int

pyrosetta.rosetta.core.pose.symmetry.sym_dof_names(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::pose::symmetry::sym_dof_names(const class core::pose::Pose &) –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.pose.symmetry.symmetric_components(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_char

C++: core::pose::symmetry::symmetric_components(const class core::pose::Pose &) –> class utility::vector1<char, class std::allocator<char> >

pyrosetta.rosetta.core.pose.symmetry.symmetrize_fold_tree(p: pyrosetta.rosetta.core.pose.Pose, f: pyrosetta.rosetta.core.kinematics.FoldTree) → None

Converts an asymmetric foldtree (f) with virtual root into a

symmetric foldtree compatible with symmetric pose (p)

• A symmetric pose

• An asymmetric foldtree. This foldtree MUST have a virtual root

This function does not require the symm data

C++: core::pose::symmetry::symmetrize_fold_tree(const class core::pose::Pose &, class core::kinematics::FoldTree &) –> void

pyrosetta.rosetta.core.pose.symmetry.symmetry_info(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo

C++: core::pose::symmetry::symmetry_info(const class core::pose::Pose &) –> class std::shared_ptr<const class core::conformation::symmetry::SymmetryInfo>