options

Bindings for protocols::recces::options namespace

class pyrosetta.rosetta.protocols.recces.options.RECCES_Options

Bases: pybind11_object

a_form_range(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::a_form_range() const –> double

accept_no_op_moves(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::accept_no_op_moves() const –> bool

angle_range_bb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::angle_range_bb() const –> double

angle_range_chi(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::angle_range_chi() const –> double

angle_range_free_bb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::angle_range_free_bb() const –> double

angle_range_free_chi(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::angle_range_free_chi() const –> double

assign(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, : pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.protocols.recces.options.RECCES_Options

C++: protocols::recces::options::RECCES_Options::operator=(const class protocols::recces::options::RECCES_Options &) –> class protocols::recces::options::RECCES_Options &

base_pair_rmsd_cutoff(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::base_pair_rmsd_cutoff() const –> double

base_pair_rotation_mag(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::base_pair_rotation_mag() const –> double

base_pair_translation_mag(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::base_pair_translation_mag() const –> double

bb_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::bb_stdev() const –> double

blank_score_terms(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::blank_score_terms() const –> bool

block_stack(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::block_stack() const –> bool

chi_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::chi_stdev() const –> double

clone(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.protocols.recces.options.RECCES_Options

C++: protocols::recces::options::RECCES_Options::clone() const –> class std::shared_ptr<class protocols::recces::options::RECCES_Options>

dump_freq(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → int

C++: protocols::recces::options::RECCES_Options::dump_freq() const –> unsigned long

dump_pdb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::dump_pdb() const –> bool

dump_silent(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::dump_silent() const –> bool

free_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::recces::options::RECCES_Options::free_residues() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

histogram_max(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::histogram_max() const –> double

histogram_min(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::histogram_min() const –> double

histogram_spacing(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::histogram_spacing() const –> double

infile(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::infile() const –> std::string

initialize_from_command_line(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → None

C++: protocols::recces::options::RECCES_Options::initialize_from_command_line() –> void

legacy_turner_mode(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::legacy_turner_mode() const –> bool

loop_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::recces::options::RECCES_Options::loop_residues() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

n_cycle(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → int

C++: protocols::recces::options::RECCES_Options::n_cycle() const –> unsigned long

n_dump(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → int

C++: protocols::recces::options::RECCES_Options::n_dump() const –> unsigned long

out_prefix(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::out_prefix() const –> std::string

out_torsions(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::out_torsions() const –> bool

output_simple_text_files(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::output_simple_text_files() const –> bool

parse_my_tag(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, : pyrosetta.rosetta.utility.tag.Tag) → None

Initialize from the recursive “tag” structure.

C++: protocols::recces::options::RECCES_Options::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

prefix_each_output_pdb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::prefix_each_output_pdb() const –> bool

rna_secstruct(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.core.pose.rna.RNA_SecStruct

C++: protocols::recces::options::RECCES_Options::rna_secstruct() const –> class core::pose::rna::RNA_SecStruct

sample_jump(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::sample_jump() const –> bool

sample_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::recces::options::RECCES_Options::sample_residues() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

save_scores(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::save_scores() const –> bool

seq1(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::seq1() const –> std::string

seq2(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::seq2() const –> std::string

set_a_form_range(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_a_form_range(const double &) –> void

set_accept_no_op_moves(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_accept_no_op_moves(const bool &) –> void

set_angle_range_bb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_angle_range_bb(const double &) –> void

set_angle_range_chi(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_angle_range_chi(const double &) –> void

set_angle_range_free_bb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_angle_range_free_bb(const double &) –> void

set_angle_range_free_chi(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_angle_range_free_chi(const double &) –> void

set_base_pair_rmsd_cutoff(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_base_pair_rmsd_cutoff(const double &) –> void

set_base_pair_rotation_mag(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_base_pair_rotation_mag(const double &) –> void

set_base_pair_translation_mag(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_base_pair_translation_mag(const double &) –> void

set_bb_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_bb_stdev(const double &) –> void

set_blank_score_terms(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_blank_score_terms(const bool &) –> void

set_block_stack(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_block_stack(const bool &) –> void

set_chi_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_chi_stdev(const double &) –> void

set_dump_freq(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: int) → None

C++: protocols::recces::options::RECCES_Options::set_dump_freq(const unsigned long &) –> void

set_dump_pdb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_dump_pdb(const bool &) –> void

set_dump_silent(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_dump_silent(const bool &) –> void

set_free_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::recces::options::RECCES_Options::set_free_residues(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_histogram_max(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_histogram_max(const double &) –> void

set_histogram_min(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_histogram_min(const double &) –> void

set_histogram_spacing(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_histogram_spacing(const double &) –> void

set_infile(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_infile(const std::string &) –> void

set_legacy_turner_mode(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_legacy_turner_mode(const bool &) –> void

set_loop_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::recces::options::RECCES_Options::set_loop_residues(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_n_cycle(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: int) → None

C++: protocols::recces::options::RECCES_Options::set_n_cycle(const unsigned long &) –> void

set_n_dump(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: int) → None

C++: protocols::recces::options::RECCES_Options::set_n_dump(const unsigned long &) –> void

set_out_prefix(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_out_prefix(const std::string &) –> void

set_out_torsions(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_out_torsions(const bool &) –> void

set_output_simple_text_files(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_output_simple_text_files(const bool &) –> void

set_prefix_each_output_pdb(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_prefix_each_output_pdb(const bool &) –> void

set_rna_secstruct(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.core.pose.rna.RNA_SecStruct) → None

C++: protocols::recces::options::RECCES_Options::set_rna_secstruct(const class core::pose::rna::RNA_SecStruct &) –> void

set_sample_jump(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_sample_jump(const bool &) –> void

set_sample_residues(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: protocols::recces::options::RECCES_Options::set_sample_residues(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_save_scores(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_save_scores(const bool &) –> void

set_seq1(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_seq1(const std::string &) –> void

set_seq2(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_seq2(const std::string &) –> void

set_setup_base_pair_constraints(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_setup_base_pair_constraints(const bool &) –> void

set_show_more_pose_scores(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_show_more_pose_scores(const bool &) –> void

set_silent_file(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_silent_file(const std::string &) –> void

set_skip_last_accept(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_skip_last_accept(const bool &) –> void

set_st_weights(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.utility.vector1_double) → None

C++: protocols::recces::options::RECCES_Options::set_st_weights(const class utility::vector1<double, class std::allocator<double> > &) –> void

set_standard_bb_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: float) → None

C++: protocols::recces::options::RECCES_Options::set_standard_bb_stdev(const double &) –> void

set_suppress_sampler_display(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_suppress_sampler_display(const bool &) –> void

set_temperatures(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: pyrosetta.rosetta.utility.vector1_double) → None

C++: protocols::recces::options::RECCES_Options::set_temperatures(const class utility::vector1<double, class std::allocator<double> > &) –> void

set_thermal_sampler_mode(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: bool) → None

C++: protocols::recces::options::RECCES_Options::set_thermal_sampler_mode(const bool &) –> void

set_xyz_file(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options, setting: str) → None

C++: protocols::recces::options::RECCES_Options::set_xyz_file(const std::string &) –> void

setup_base_pair_constraints(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::setup_base_pair_constraints() const –> bool

show_more_pose_scores(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::show_more_pose_scores() const –> bool

silent_file(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::silent_file() const –> std::string

skip_last_accept(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::skip_last_accept() const –> bool

st_weights(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::recces::options::RECCES_Options::st_weights() const –> class utility::vector1<double, class std::allocator<double> >

standard_bb_stdev(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → float

C++: protocols::recces::options::RECCES_Options::standard_bb_stdev() const –> double

suppress_sampler_display(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::suppress_sampler_display() const –> bool

temperatures(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::recces::options::RECCES_Options::temperatures() const –> class utility::vector1<double, class std::allocator<double> >

thermal_sampler_mode(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → bool

C++: protocols::recces::options::RECCES_Options::thermal_sampler_mode() const –> bool

type(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

The class name (its type) for a particular ResourceOptions instance.

This function allows for better error message delivery.

C++: protocols::recces::options::RECCES_Options::type() const –> std::string

xyz_file(self: pyrosetta.rosetta.protocols.recces.options.RECCES_Options) → str

C++: protocols::recces::options::RECCES_Options::xyz_file() const –> std::string