rna

Bindings for protocols::recces::sampler::rna namespace

class pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler

Bases: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

apply(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply the current rotamer to pose

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

C++: protocols::recces::sampler::MC_Sampler::operator=(const class protocols::recces::sampler::MC_Sampler &) –> class protocols::recces::sampler::MC_Sampler &

check_moved(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) bool

Did the pose move at all?

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::check_moved() const –> bool

choose_solution(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) None

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::choose_solution() –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, torsion_id: pyrosetta.rosetta.core.id.TorsionID) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

return OP to the subsampler that controls exactly this torsion_id (assume only one).

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::find(const class core::id::TorsionID &) –> class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>

found_move(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

check if ++ did anything to pose.

C++: protocols::recces::sampler::MC_Sampler::found_move() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) str

Name of the class

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_next_solutions(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::get_next_solutions(const class core::pose::Pose &) –> void

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) None

Initialization

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::init() –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

next(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::next(const class core::pose::Pose &) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

plus_plus(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) None

Move to next rotamer

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::operator++() –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) None

Reset to the first (or random if is_random()) rotamer.

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::reset() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restore(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.core.pose.Pose) None

restore pose to state prior to this sampler’s apply(). Would enable big speedup in monte carlo by obviating pose copies.

C++: protocols::recces::sampler::MC_Sampler::restore(class core::pose::Pose &) –> void

set_angle_range_from_init_torsions(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, range: float) None

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::set_angle_range_from_init_torsions(const double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_gaussian_stdev(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, setting: float) None

Set the standard deviation of Gaussian sampler

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::set_gaussian_stdev(const double) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_max_tries(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, setting: int) None

Max # of step for trying in random samping

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::set_max_tries(const unsigned long) –> void

set_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: str) None

Set name of the class

C++: protocols::recces::sampler::MC_Sampler::set_name(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: bool) None

Set uniform modeler (instead of Gaussian)

C++: protocols::recces::sampler::MC_Sampler::set_uniform_modeler(const bool) –> void

set_update_pose(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: pyrosetta.rosetta.core.pose.Pose) None

set (optional) update_pose

C++: protocols::recces::sampler::MC_Sampler::set_update_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, out: pyrosetta.rosetta.std.ostream) -> None

  2. show(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler, out: pyrosetta.rosetta.std.ostream, indent: int) -> None

output summary of class

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::show(std::ostream &, const unsigned long) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) pyrosetta.rosetta.protocols.toolbox.SamplerPlusPlusType

Type of class (see enum in toolbox::SamplerPlusPlusTypes.hh)

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::type() const –> enum protocols::toolbox::SamplerPlusPlusType

uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

Get uniform modeler state

C++: protocols::recces::sampler::MC_Sampler::uniform_modeler() const –> bool

update(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_KIC_Sampler) None

Update rotamer

C++: protocols::recces::sampler::rna::MC_RNA_KIC_Sampler::update() –> void

class pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite

Bases: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb

add_rotamer(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, rotamer: protocols::recces::sampler::rna::MC_RNA_Suite) None

Add one more rotamer sampler to this sampler

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::add_rotamer(class std::shared_ptr<class protocols::recces::sampler::rna::MC_RNA_Suite>) –> void

apply(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply the current rotamer to pose

C++: protocols::recces::sampler::MC_Comb::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, : pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite) pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::operator=(const class protocols::recces::sampler::rna::MC_RNA_MultiSuite &) –> class protocols::recces::sampler::rna::MC_RNA_MultiSuite &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_rotamer(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite) None

Clear all rotamer samplers stored in this sampler

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::clear_rotamer() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, torsion_id: pyrosetta.rosetta.core.id.TorsionID) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

return OP to the subsampler that controls exactly this torsion_id (assume only one).

C++: protocols::recces::sampler::MC_Comb::find(const class core::id::TorsionID &) –> class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>

found_move(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

check if ++ did anything to pose.

C++: protocols::recces::sampler::MC_Sampler::found_move() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) str

Name of the class

C++: protocols::recces::sampler::MC_Sampler::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Initialization

C++: protocols::recces::sampler::MC_Comb::init() –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

num_rotamers(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) int

C++: protocols::recces::sampler::MC_Comb::num_rotamers() const –> unsigned long

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

plus_plus(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite) None

Move to next rotamer

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::operator++() –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Reset to the first (or random if random()) rotamer

C++: protocols::recces::sampler::MC_Comb::reset() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restore(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.core.pose.Pose) None

restore pose to state prior to this sampler’s apply(). Would enable big speedup in monte carlo by obviating pose copies.

C++: protocols::recces::sampler::MC_Sampler::restore(class core::pose::Pose &) –> void

set_angle(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, pose: pyrosetta.rosetta.core.pose.Pose) None

Set the stored angle from a pose

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_angle(const class core::pose::Pose &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_do_no_op_random(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, setting: bool) None

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_do_no_op_random(const bool &) –> void

set_gaussian_stdev(*args, **kwargs)

Overloaded function.

  1. set_gaussian_stdev(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, setting: float) -> None

Set the standard deviation of Gaussian sampler

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_gaussian_stdev(const double) –> void

  1. set_gaussian_stdev(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, setting: float, rotamer_id: int) -> None

Set the standard deviation of a sampler

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_gaussian_stdev(const double, const unsigned long) –> void

set_init_from_pose(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, pose: pyrosetta.rosetta.core.pose.Pose) None

Set starting torsions and pucker states from pose

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_init_from_pose(const class core::pose::Pose &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: str) None

Set name of the class

C++: protocols::recces::sampler::MC_Sampler::set_name(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_pucker_flip_rate(*args, **kwargs)

Overloaded function.

  1. set_pucker_flip_rate(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, setting: float) -> None

Set the flip rate of pucker

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_pucker_flip_rate(const double) –> void

  1. set_pucker_flip_rate(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite, setting: float, rotamer_id: int) -> None

Set the flip rate of pucker for a sampler

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::set_pucker_flip_rate(const double, const unsigned long) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, setting: bool) None

Get uniform modeler state

C++: protocols::recces::sampler::MC_Comb::set_uniform_modeler(const bool) –> void

set_update_pose(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, setting: pyrosetta.rosetta.core.pose.Pose) None

set (optional) update_pose

C++: protocols::recces::sampler::MC_Comb::set_update_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, out: pyrosetta.rosetta.std.ostream) -> None

  2. show(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, out: pyrosetta.rosetta.std.ostream, indent: int) -> None

output summary of class

C++: protocols::recces::sampler::MC_Comb::show(std::ostream &, const unsigned long) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_MultiSuite) pyrosetta.rosetta.protocols.toolbox.SamplerPlusPlusType

Type of class (see enum in toolbox::SamplerPlusPlusTypes.hh)

C++: protocols::recces::sampler::rna::MC_RNA_MultiSuite::type() const –> enum protocols::toolbox::SamplerPlusPlusType

uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

Get uniform modeler state

C++: protocols::recces::sampler::MC_Sampler::uniform_modeler() const –> bool

update(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Update the DOFs

C++: protocols::recces::sampler::MC_Comb::update() –> void

class pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump

Bases: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

active_jump(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) pyrosetta.rosetta.core.kinematics.Jump

Get the active jump

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::active_jump() const –> class core::kinematics::Jump

apply(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply the active jump to pose

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

C++: protocols::recces::sampler::MC_Sampler::operator=(const class protocols::recces::sampler::MC_Sampler &) –> class protocols::recces::sampler::MC_Sampler &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, torsion_id: pyrosetta.rosetta.core.id.TorsionID) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

return OP to the subsampler that controls exactly this torsion_id (assume only one).

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::find(const class core::id::TorsionID &) –> class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>

found_move(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

check if ++ did anything to pose.

C++: protocols::recces::sampler::MC_Sampler::found_move() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) str

Name of the class

C++: protocols::recces::sampler::MC_Sampler::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) None

Initialization

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::init() –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

plus_plus(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) None
Update the active jump based on stored

(do not update stored_jump_)

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::operator++() –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) None

Reset to current angle

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::reset() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restore(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.core.pose.Pose) None

restore pose to state prior to this sampler’s apply(). Would enable big speedup in monte carlo by obviating pose copies.

C++: protocols::recces::sampler::MC_Sampler::restore(class core::pose::Pose &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_jump(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, setting: pyrosetta.rosetta.core.kinematics.Jump) None

Set the stored jump

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::set_jump(const class core::kinematics::Jump &) –> void

set_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: str) None

Set name of the class

C++: protocols::recces::sampler::MC_Sampler::set_name(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_rmsd_cutoff(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, setting: float) None

Set the jump range (defined by RMSD of base from reference location )

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::set_rmsd_cutoff(const double &) –> void

set_rotation_mag(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, setting: float) None

Set the standard deviation of rotation – LATER: split out Gaussian vs. uniform

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::set_rotation_mag(const double &) –> void

set_translation_mag(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, setting: float) None

Set the standard deviation of translation – LATER: split out Gaussian vs. uniform

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::set_translation_mag(const double &) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: bool) None

Set uniform modeler (instead of Gaussian)

C++: protocols::recces::sampler::MC_Sampler::set_uniform_modeler(const bool) –> void

set_update_pose(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: pyrosetta.rosetta.core.pose.Pose) None

set (optional) update_pose

C++: protocols::recces::sampler::MC_Sampler::set_update_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

show(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump, out: pyrosetta.rosetta.std.ostream, indent: int) None

output summary of class

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::show(std::ostream &, const unsigned long) const –> void

stored_jump(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) pyrosetta.rosetta.core.kinematics.Jump

Get the stored jump

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::stored_jump() const –> class core::kinematics::Jump

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) pyrosetta.rosetta.protocols.toolbox.SamplerPlusPlusType

Type of class (see enum in toolbox::SamplerPlusPlusTypes.hh)

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::type() const –> enum protocols::toolbox::SamplerPlusPlusType

uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

Get uniform modeler state

C++: protocols::recces::sampler::MC_Sampler::uniform_modeler() const –> bool

update(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_OneJump) None

Update the stored jump to match active jump

C++: protocols::recces::sampler::rna::MC_RNA_OneJump::update() –> void

class pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar

Bases: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

apply(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply DOFs to pose

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, : pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::operator=(const class protocols::recces::sampler::rna::MC_RNA_Sugar &) –> class protocols::recces::sampler::rna::MC_RNA_Sugar &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, torsion_id: pyrosetta.rosetta.core.id.TorsionID) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

return OP to the subsampler that controls exactly this torsion_id (assume only one).

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::find(const class core::id::TorsionID &) –> class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>

found_move(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

check if ++ did anything to pose.

C++: protocols::recces::sampler::MC_Sampler::found_move() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) str

Name of the class

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) None

Initialization

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::init() –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

plus_plus(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) None

Generate new active DOFs

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::operator++() –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) None

Reset to current angle

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::reset() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restore(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.core.pose.Pose) None

restore pose to state prior to this sampler’s apply(). Would enable big speedup in monte carlo by obviating pose copies.

C++: protocols::recces::sampler::MC_Sampler::restore(class core::pose::Pose &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_flip_rate(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, setting: float) None

Set the flip rate of pucker

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::set_flip_rate(const double) –> void

set_idealize_coord(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, setting: bool) None

Set if using RNA_IdealCoord to sample puckers

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::set_idealize_coord(const bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: str) None

Set name of the class

C++: protocols::recces::sampler::MC_Sampler::set_name(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_skip_same_pucker(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, setting: bool) None

Set if the sampler will skip pucker applying when input pose has

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::set_skip_same_pucker(const bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: bool) None

Set uniform modeler (instead of Gaussian)

C++: protocols::recces::sampler::MC_Sampler::set_uniform_modeler(const bool) –> void

set_update_pose(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: pyrosetta.rosetta.core.pose.Pose) None

set (optional) update_pose

C++: protocols::recces::sampler::MC_Sampler::set_update_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

show(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar, out: pyrosetta.rosetta.std.ostream, indent: int) None

output summary of class

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::show(std::ostream &, const unsigned long) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) pyrosetta.rosetta.protocols.toolbox.SamplerPlusPlusType

Type of class (see enum in toolbox::SamplerPlusPlusTypes.hh)

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::type() const –> enum protocols::toolbox::SamplerPlusPlusType

uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

Get uniform modeler state

C++: protocols::recces::sampler::MC_Sampler::uniform_modeler() const –> bool

update(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Sugar) None

Update the stored DOFs

C++: protocols::recces::sampler::rna::MC_RNA_Sugar::update() –> void

class pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite

Bases: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb

add_rotamer(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, rotamer: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) None

Add one more rotamer sampler to this sampler

C++: protocols::recces::sampler::MC_Comb::add_rotamer(const class std::shared_ptr<class protocols::recces::sampler::MC_Sampler> &) –> void

apply(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, pose: pyrosetta.rosetta.core.pose.Pose) None

Apply the current rotamer to pose

C++: protocols::recces::sampler::MC_Comb::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, : pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) pyrosetta.rosetta.protocols.recces.sampler.MC_Comb

C++: protocols::recces::sampler::MC_Comb::operator=(const class protocols::recces::sampler::MC_Comb &) –> class protocols::recces::sampler::MC_Comb &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_rotamer(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite) None

Clear all rotamer samplers stored in this sampler

C++: protocols::recces::sampler::rna::MC_RNA_Suite::clear_rotamer() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, torsion_id: pyrosetta.rosetta.core.id.TorsionID) pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler

return OP to the subsampler that controls exactly this torsion_id (assume only one).

C++: protocols::recces::sampler::MC_Comb::find(const class core::id::TorsionID &) –> class std::shared_ptr<class protocols::recces::sampler::MC_Sampler>

found_move(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

check if ++ did anything to pose.

C++: protocols::recces::sampler::MC_Sampler::found_move() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite) str

Name of the class

C++: protocols::recces::sampler::rna::MC_RNA_Suite::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

init(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite) None

Initialization

C++: protocols::recces::sampler::rna::MC_RNA_Suite::init() –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

num_rotamers(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) int

C++: protocols::recces::sampler::MC_Comb::num_rotamers() const –> unsigned long

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

plus_plus(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Move to next rotamer

C++: protocols::recces::sampler::MC_Comb::operator++() –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Reset to the first (or random if random()) rotamer

C++: protocols::recces::sampler::MC_Comb::reset() –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restore(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, : pyrosetta.rosetta.core.pose.Pose) None

restore pose to state prior to this sampler’s apply(). Would enable big speedup in monte carlo by obviating pose copies.

C++: protocols::recces::sampler::MC_Sampler::restore(class core::pose::Pose &) –> void

set_a_form_range(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: float) None

Set angle ranges for A form rotamers

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_a_form_range(const double) –> void

set_angle(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, pose: pyrosetta.rosetta.core.pose.Pose) None

Set the stored angle from a pose

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_angle(const class core::pose::Pose &) –> void

set_angle_range_from_init(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: float) None

Set the angle range from the initial torsions

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_angle_range_from_init(const double) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_gaussian_stdev(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: float) None

Set the standard deviation of Gaussian sampler

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_gaussian_stdev(const double) –> void

set_idealize_coord(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if using RNA_IdealCoord to sample puckers

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_idealize_coord(const bool) –> void

set_init_from_pose(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, pose: pyrosetta.rosetta.core.pose.Pose) None

Set starting torsions and pucker states from pose

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_init_from_pose(const class core::pose::Pose &) –> void

set_init_states(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, init_torsions: pyrosetta.rosetta.utility.vector1_double, init_pucker: pyrosetta.rosetta.core.chemical.rna.PuckerState) None

Set starting torsions and pucker states

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_init_states(const class utility::vector1<double, class std::allocator<double> > &, const enum core::chemical::rna::PuckerState) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_name(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler, setting: str) None

Set name of the class

C++: protocols::recces::sampler::MC_Sampler::set_name(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_pucker_flip_rate(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: float) None

Set the flip rate of pucker

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_pucker_flip_rate(const double) –> void

set_sample_bb(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if sample backbone

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_sample_bb(const bool) –> void

set_sample_lower_nucleoside(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if sample nucleoside

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_sample_lower_nucleoside(const bool) –> void

set_sample_near_a_form(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if only sample near A form rotamers

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_sample_near_a_form(const bool) –> void

set_sample_upper_nucleoside(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if sample nucleoside

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_sample_upper_nucleoside(const bool) –> void

set_skip_same_pucker(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite, setting: bool) None

Set if the sampler will skip pucker applying when input pose has

C++: protocols::recces::sampler::rna::MC_RNA_Suite::set_skip_same_pucker(const bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, setting: bool) None

Get uniform modeler state

C++: protocols::recces::sampler::MC_Comb::set_uniform_modeler(const bool) –> void

set_update_pose(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, setting: pyrosetta.rosetta.core.pose.Pose) None

set (optional) update_pose

C++: protocols::recces::sampler::MC_Comb::set_update_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, out: pyrosetta.rosetta.std.ostream) -> None

  2. show(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb, out: pyrosetta.rosetta.std.ostream, indent: int) -> None

output summary of class

C++: protocols::recces::sampler::MC_Comb::show(std::ostream &, const unsigned long) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(self: pyrosetta.rosetta.protocols.recces.sampler.rna.MC_RNA_Suite) pyrosetta.rosetta.protocols.toolbox.SamplerPlusPlusType

Type of class (see enum in toolbox::SamplerPlusPlusTypes.hh)

C++: protocols::recces::sampler::rna::MC_RNA_Suite::type() const –> enum protocols::toolbox::SamplerPlusPlusType

uniform_modeler(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Sampler) bool

Get uniform modeler state

C++: protocols::recces::sampler::MC_Sampler::uniform_modeler() const –> bool

update(self: pyrosetta.rosetta.protocols.recces.sampler.MC_Comb) None

Update the DOFs

C++: protocols::recces::sampler::MC_Comb::update() –> void