sic_dock

• scores

Bindings for protocols::sic_dock namespace

class pyrosetta.rosetta.protocols.sic_dock.AtomIDHashFunction

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.sic_dock.AtomIDHashFunction, : pyrosetta.rosetta.protocols.sic_dock.AtomIDHashFunction) → pyrosetta.rosetta.protocols.sic_dock.AtomIDHashFunction

C++: protocols::sic_dock::AtomIDHashFunction::operator=(const struct protocols::sic_dock::AtomIDHashFunction &) –> struct protocols::sic_dock::AtomIDHashFunction &

class pyrosetta.rosetta.protocols.sic_dock.BuriedPolarScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.BuriedPolarScore, : pyrosetta.rosetta.protocols.sic_dock.BuriedPolarScore) → pyrosetta.rosetta.protocols.sic_dock.BuriedPolarScore

C++: protocols::sic_dock::BuriedPolarScore::operator=(const class protocols::sic_dock::BuriedPolarScore &) –> class protocols::sic_dock::BuriedPolarScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::RigidScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore) → str

C++: protocols::sic_dock::RigidScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.CBScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, : pyrosetta.rosetta.protocols.sic_dock.RigidScore) → pyrosetta.rosetta.protocols.sic_dock.RigidScore

C++: protocols::sic_dock::RigidScore::operator=(const class protocols::sic_dock::RigidScore &) –> class protocols::sic_dock::RigidScore &

property clash_dis_

property contact_dis_

property hash_pose1_

property points_

score(self: pyrosetta.rosetta.protocols.sic_dock.CBScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::CBScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.CBScore) → str

C++: protocols::sic_dock::CBScore::type() const –> std::string

property weights_

property xyzhash_

class pyrosetta.rosetta.protocols.sic_dock.ConstraintSetScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, : pyrosetta.rosetta.protocols.sic_dock.RigidScore) → pyrosetta.rosetta.protocols.sic_dock.RigidScore

C++: protocols::sic_dock::RigidScore::operator=(const class protocols::sic_dock::RigidScore &) –> class protocols::sic_dock::RigidScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.ConstraintSetScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::ConstraintSetScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.ConstraintSetScore) → str

C++: protocols::sic_dock::ConstraintSetScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.EdgeStandScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.EdgeStandScore, : pyrosetta.rosetta.protocols.sic_dock.EdgeStandScore) → pyrosetta.rosetta.protocols.sic_dock.EdgeStandScore

C++: protocols::sic_dock::EdgeStandScore::operator=(const class protocols::sic_dock::EdgeStandScore &) –> class protocols::sic_dock::EdgeStandScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::RigidScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore) → str

C++: protocols::sic_dock::RigidScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.HelixScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.HelixScore, : pyrosetta.rosetta.protocols.sic_dock.HelixScore) → pyrosetta.rosetta.protocols.sic_dock.HelixScore

C++: protocols::sic_dock::HelixScore::operator=(const class protocols::sic_dock::HelixScore &) –> class protocols::sic_dock::HelixScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::RigidScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore) → str

C++: protocols::sic_dock::RigidScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.JointScore

Bases: RigidScore

/// composite scores

add_score(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, score: pyrosetta.rosetta.protocols.sic_dock.RigidScore, weight: float) → None

C++: protocols::sic_dock::JointScore::add_score(class std::shared_ptr<const class protocols::sic_dock::RigidScore>, double) –> void

assign(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, : pyrosetta.rosetta.protocols.sic_dock.JointScore) → pyrosetta.rosetta.protocols.sic_dock.JointScore

C++: protocols::sic_dock::JointScore::operator=(const class protocols::sic_dock::JointScore &) –> class protocols::sic_dock::JointScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::JointScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::JointScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.JointScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::JointScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.JointScore) → str

C++: protocols::sic_dock::JointScore::type() const –> std::string

pyrosetta.rosetta.protocols.sic_dock.KMGT(x: float, w: int, d: int) → str

C++: protocols::sic_dock::KMGT(const double &, const int &, const int &) –> std::string

class pyrosetta.rosetta.protocols.sic_dock.LinkerScore

Bases: RigidScore

assign(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, : pyrosetta.rosetta.protocols.sic_dock.RigidScore) → pyrosetta.rosetta.protocols.sic_dock.RigidScore

C++: protocols::sic_dock::RigidScore::operator=(const class protocols::sic_dock::RigidScore &) –> class protocols::sic_dock::RigidScore &

dump_linkers(self: pyrosetta.rosetta.protocols.sic_dock.LinkerScore, x1: pyrosetta.rosetta.numeric.xyzTransform_double_t, x2: pyrosetta.rosetta.numeric.xyzTransform_double_t, out_perfix: str) → bool

C++: protocols::sic_dock::LinkerScore::dump_linkers(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, const std::string &) const –> bool

score(self: pyrosetta.rosetta.protocols.sic_dock.LinkerScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::LinkerScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.LinkerScore) → str

C++: protocols::sic_dock::LinkerScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.RigidScore

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, : pyrosetta.rosetta.protocols.sic_dock.RigidScore) → pyrosetta.rosetta.protocols.sic_dock.RigidScore

C++: protocols::sic_dock::RigidScore::operator=(const class protocols::sic_dock::RigidScore &) –> class protocols::sic_dock::RigidScore &

score(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) → float

C++: protocols::sic_dock::RigidScore::score(const struct numeric::Xforms &, const struct numeric::Xforms &) const –> double

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream) -> None

2. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, int) const –> void

3. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms) -> None

4. show(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore, out: pyrosetta.rosetta.std.ostream, x1: pyrosetta.rosetta.numeric.Xforms, x2: pyrosetta.rosetta.numeric.Xforms, width: int) -> None

C++: protocols::sic_dock::RigidScore::show(std::ostream &, const struct numeric::Xforms &, const struct numeric::Xforms &, int) const –> void

type(self: pyrosetta.rosetta.protocols.sic_dock.RigidScore) → str

C++: protocols::sic_dock::RigidScore::type() const –> std::string

class pyrosetta.rosetta.protocols.sic_dock.Rose

Bases: pybind11_object

align_c(self: pyrosetta.rosetta.protocols.sic_dock.Rose, a: pyrosetta.rosetta.numeric.xyzTransform_double_t) → None

C++: protocols::sic_dock::Rose::align_c(const class numeric::xyzTransform<double> &) –> void

align_n(self: pyrosetta.rosetta.protocols.sic_dock.Rose, a: pyrosetta.rosetta.numeric.xyzTransform_double_t) → None

C++: protocols::sic_dock::Rose::align_n(const class numeric::xyzTransform<double> &) –> void

assign(self: pyrosetta.rosetta.protocols.sic_dock.Rose, : pyrosetta.rosetta.protocols.sic_dock.Rose) → pyrosetta.rosetta.protocols.sic_dock.Rose

C++: protocols::sic_dock::Rose::operator=(const class protocols::sic_dock::Rose &) –> class protocols::sic_dock::Rose &

c_anchor(self: pyrosetta.rosetta.protocols.sic_dock.Rose) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::Rose::c_anchor() const –> const class numeric::xyzTransform<double>

clashes(*args, **kwargs)

Overloaded function.

1. clashes(self: pyrosetta.rosetta.protocols.sic_dock.Rose, point: pyrosetta.rosetta.numeric.xyzVector_double_t) -> bool

C++: protocols::sic_dock::Rose::clashes(const class numeric::xyzVector<double> &) const –> bool

2. clashes(self: pyrosetta.rosetta.protocols.sic_dock.Rose, other: pyrosetta.rosetta.protocols.sic_dock.Rose) -> bool

C++: protocols::sic_dock::Rose::clashes(const class protocols::sic_dock::Rose &) const –> bool

clashes_naive(self: pyrosetta.rosetta.protocols.sic_dock.Rose, other: pyrosetta.rosetta.protocols.sic_dock.Rose) → bool

///////////// debug //////////////////

C++: protocols::sic_dock::Rose::clashes_naive(const class protocols::sic_dock::Rose &) const –> bool

contacts(self: pyrosetta.rosetta.protocols.sic_dock.Rose, other: pyrosetta.rosetta.protocols.sic_dock.Rose) → int

C++: protocols::sic_dock::Rose::contacts(const class protocols::sic_dock::Rose &) const –> unsigned long

contacts_naive(self: pyrosetta.rosetta.protocols.sic_dock.Rose, other: pyrosetta.rosetta.protocols.sic_dock.Rose) → int

C++: protocols::sic_dock::Rose::contacts_naive(const class protocols::sic_dock::Rose &) const –> unsigned long

dump_minimal_pdb(*args, **kwargs)

Overloaded function.

1. dump_minimal_pdb(self: pyrosetta.rosetta.protocols.sic_dock.Rose, out: pyrosetta.rosetta.std.ostream) -> None

2. dump_minimal_pdb(self: pyrosetta.rosetta.protocols.sic_dock.Rose, out: pyrosetta.rosetta.std.ostream, chain: str) -> None

C++: protocols::sic_dock::Rose::dump_minimal_pdb(std::ostream &, char) –> void

dump_pdb(*args, **kwargs)

Overloaded function.

1. dump_pdb(self: pyrosetta.rosetta.protocols.sic_dock.Rose, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::sic_dock::Rose::dump_pdb(std::ostream &) const –> void

2. dump_pdb(self: pyrosetta.rosetta.protocols.sic_dock.Rose, fname: str) -> None

C++: protocols::sic_dock::Rose::dump_pdb(const std::string &) const –> void

property h

n_anchor(self: pyrosetta.rosetta.protocols.sic_dock.Rose) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::Rose::n_anchor() const –> const class numeric::xyzTransform<double>

property p

pose(self: pyrosetta.rosetta.protocols.sic_dock.Rose) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::sic_dock::Rose::pose() const –> class std::shared_ptr<const class core::pose::Pose>

res_anchor(self: pyrosetta.rosetta.protocols.sic_dock.Rose, ir: int) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::Rose::res_anchor(const unsigned long &) const –> const class numeric::xyzTransform<double>

property x

class pyrosetta.rosetta.protocols.sic_dock.SICFast

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, : pyrosetta.rosetta.protocols.sic_dock.SICFast) → pyrosetta.rosetta.protocols.sic_dock.SICFast

C++: protocols::sic_dock::SICFast::operator=(const class protocols::sic_dock::SICFast &) –> class protocols::sic_dock::SICFast &

init(*args, **kwargs)

Overloaded function.

1. init(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, pose1: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::sic_dock::SICFast::init(const class core::pose::Pose &) –> void

2. init(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::sic_dock::SICFast::init(const class core::pose::Pose &, const class core::pose::Pose &) –> void

3. init(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, pose1: pyrosetta.rosetta.core.pose.Pose, clash_atoms1: pyrosetta.rosetta.core.id.AtomID_Map_double_t) -> None

C++: protocols::sic_dock::SICFast::init(const class core::pose::Pose &, const class core::id::AtomID_Map<double> &) –> void

4. init(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, clash_atoms1: pyrosetta.rosetta.core.id.AtomID_Map_double_t, clash_atoms2: pyrosetta.rosetta.core.id.AtomID_Map_double_t) -> None

C++: protocols::sic_dock::SICFast::init(const class core::pose::Pose &, const class core::pose::Pose &, const class core::id::AtomID_Map<double> &, const class core::id::AtomID_Map<double> &) –> void

slide_into_contact(*args, **kwargs)

Overloaded function.

1. slide_into_contact(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, xmob: pyrosetta.rosetta.numeric.xyzTransform_double_t, xfix: pyrosetta.rosetta.numeric.xyzTransform_double_t, ori: pyrosetta.rosetta.numeric.xyzVector_double_t) -> float

C++: protocols::sic_dock::SICFast::slide_into_contact(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, class numeric::xyzVector<double>) const –> double

2. slide_into_contact(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, xmob: pyrosetta.rosetta.numeric.Xforms, xfix: pyrosetta.rosetta.numeric.Xforms, ori: pyrosetta.rosetta.numeric.xyzVector_double_t) -> float

C++: protocols::sic_dock::SICFast::slide_into_contact(const struct numeric::Xforms &, const struct numeric::Xforms &, class numeric::xyzVector<double>) const –> double

slide_into_contact_DEPRICATED(self: pyrosetta.rosetta.protocols.sic_dock.SICFast, xmob: pyrosetta.rosetta.core.kinematics.Stub, xfix: pyrosetta.rosetta.core.kinematics.Stub, ori: pyrosetta.rosetta.numeric.xyzVector_double_t) → float

C++: protocols::sic_dock::SICFast::slide_into_contact_DEPRICATED(const class core::kinematics::Stub &, const class core::kinematics::Stub &, class numeric::xyzVector<double>) const –> double

class pyrosetta.rosetta.protocols.sic_dock.Vec3

Bases: pybind11_object

property a

property b

property c

class pyrosetta.rosetta.protocols.sic_dock.XfoxmScore

Bases: pybind11_object

fillarray(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, a: str, fname: str) → None

C++: protocols::sic_dock::XfoxmScore::fillarray(char *, std::string) –> void

makebinary(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, a: str, fname: str) → None

C++: protocols::sic_dock::XfoxmScore::makebinary(char *, std::string) –> void

score(*args, **kwargs)

Overloaded function.

1. score(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, s1: pyrosetta.rosetta.numeric.xyzTransform_double_t, s2: pyrosetta.rosetta.numeric.xyzTransform_double_t, ss1: str, ss2: str) -> float

C++: protocols::sic_dock::XfoxmScore::score(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, char, char) const –> float

2. score(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, pose: pyrosetta.rosetta.core.pose.Pose, rsd1: int, rsd2: int) -> float

C++: protocols::sic_dock::XfoxmScore::score(const class core::pose::Pose &, unsigned long, unsigned long) const –> float

3. score(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, pose: pyrosetta.rosetta.core.pose.Pose) -> float

4. score(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, pose: pyrosetta.rosetta.core.pose.Pose, compute_ss: bool) -> float

C++: protocols::sic_dock::XfoxmScore::score(class core::pose::Pose &, bool) const –> float

5. score(self: pyrosetta.rosetta.protocols.sic_dock.XfoxmScore, pose: pyrosetta.rosetta.core.pose.Pose) -> float

C++: protocols::sic_dock::XfoxmScore::score(const class core::pose::Pose &) const –> float

pyrosetta.rosetta.protocols.sic_dock.alignaxis(*args, **kwargs)

Overloaded function.

1. alignaxis(pose: pyrosetta.rosetta.core.pose.Pose, newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

2. alignaxis(pose: pyrosetta.rosetta.core.pose.Pose, newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

C++: protocols::sic_dock::alignaxis(class core::pose::Pose &, class numeric::xyzVector<double>, class numeric::xyzVector<double>, class numeric::xyzVector<double>) –> void

pyrosetta.rosetta.protocols.sic_dock.alignaxis_xform(*args, **kwargs)

Overloaded function.

1. alignaxis_xform(newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

2. alignaxis_xform(newaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, oldaxis: pyrosetta.rosetta.numeric.xyzVector_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::alignaxis_xform(class numeric::xyzVector<double>, class numeric::xyzVector<double>, class numeric::xyzVector<double>) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.auto_trim_floppy_termini(*args, **kwargs)

Overloaded function.

1. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose) -> None

2. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose, ttrim_cut: float) -> None

3. auto_trim_floppy_termini(pose: pyrosetta.rosetta.core.pose.Pose, ttrim_cut: float, nfold: int) -> None

C++: protocols::sic_dock::auto_trim_floppy_termini(class core::pose::Pose &, const double, const unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.cb_weight(*args, **kwargs)

Overloaded function.

1. cb_weight(pose: pyrosetta.rosetta.core.pose.Pose, ires: int) -> float

2. cb_weight(pose: pyrosetta.rosetta.core.pose.Pose, ires: int, distance_threshold: float) -> float

C++: protocols::sic_dock::cb_weight(const class core::pose::Pose &, unsigned long, double) –> double

pyrosetta.rosetta.protocols.sic_dock.cb_weight_map_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.id.AtomID_Map_double_t

C++: protocols::sic_dock::cb_weight_map_from_pose(const class core::pose::Pose &) –> class core::id::AtomID_Map<double>

pyrosetta.rosetta.protocols.sic_dock.cb_weights_from_map(pose: pyrosetta.rosetta.core.pose.Pose, map: pyrosetta.rosetta.core.id.AtomID_Map_double_t) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::sic_dock::cb_weights_from_map(const class core::pose::Pose &, const class core::id::AtomID_Map<double> &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.protocols.sic_dock.cb_weights_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_double

C++: protocols::sic_dock::cb_weights_from_pose(const class core::pose::Pose &) –> class utility::vector1<double, class std::allocator<double> >

pyrosetta.rosetta.protocols.sic_dock.center_of_geom(*args, **kwargs)

Overloaded function.

1. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.numeric.xyzVector_double_t

2. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose, str: int) -> pyrosetta.rosetta.numeric.xyzVector_double_t

3. center_of_geom(pose: pyrosetta.rosetta.core.pose.Pose, str: int, end: int) -> pyrosetta.rosetta.numeric.xyzVector_double_t

C++: protocols::sic_dock::center_of_geom(const class core::pose::Pose &, unsigned long, unsigned long) –> class numeric::xyzVector<double>

pyrosetta.rosetta.protocols.sic_dock.count_CBs(pose: pyrosetta.rosetta.core.pose.Pose) → int

C++: protocols::sic_dock::count_CBs(const class core::pose::Pose &) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.count_linkers(*args, **kwargs)

Overloaded function.

1. count_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

2. count_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int) -> int

C++: protocols::sic_dock::count_linkers(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, class std::shared_ptr<const class protocols::loophash::LoopHashLibrary>, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.dump_loophash_linkers(*args, **kwargs)

Overloaded function.

1. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long) -> int

2. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int) -> int

3. dump_loophash_linkers(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t, loop_hash_library: pyrosetta.rosetta.protocols.loophash.LoopHashLibrary, loopsizes: pyrosetta.rosetta.utility.vector1_unsigned_long, radius: int, outtag: str) -> int

C++: protocols::sic_dock::dump_loophash_linkers(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, class std::shared_ptr<const class protocols::loophash::LoopHashLibrary>, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, const std::string &) –> unsigned long

pyrosetta.rosetta.protocols.sic_dock.dump_points_pdb(*args, **kwargs)

Overloaded function.

1. dump_points_pdb(p: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, fn: str) -> None

C++: protocols::sic_dock::dump_points_pdb(const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, std::string) –> void

2. dump_points_pdb(p: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t, t: pyrosetta.rosetta.numeric.xyzVector_double_t, fn: str) -> None

C++: protocols::sic_dock::dump_points_pdb(const class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > > &, class numeric::xyzVector<double>, std::string) –> void

pyrosetta.rosetta.protocols.sic_dock.flood_fill3D(i: int, j: int, k: int, grid: pyrosetta.rosetta.ObjexxFCL.FArray3D_double_t, t: float) → int

C++: protocols::sic_dock::flood_fill3D(int, int, int, class ObjexxFCL::FArray3D<double> &, double) –> int

pyrosetta.rosetta.protocols.sic_dock.get_CB_Vecs_from_map(pose: pyrosetta.rosetta.core.pose.Pose, map: pyrosetta.rosetta.core.id.AtomID_Map_double_t) → pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t

C++: protocols::sic_dock::get_CB_Vecs_from_map(const class core::pose::Pose &, const class core::id::AtomID_Map<double> &) –> class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > >

pyrosetta.rosetta.protocols.sic_dock.get_CB_Vecs_from_pose(pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_numeric_xyzVector_double_t

C++: protocols::sic_dock::get_CB_Vecs_from_pose(const class core::pose::Pose &) –> class utility::vector1<class numeric::xyzVector<double>, class std::allocator<class numeric::xyzVector<double> > >

pyrosetta.rosetta.protocols.sic_dock.get_leap_6dof(lower: pyrosetta.rosetta.numeric.xyzTransform_double_t, upper: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.utility.fixedsizearray1_double_6_t

C++: protocols::sic_dock::get_leap_6dof(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &) –> class utility::fixedsizearray1<double, 6>

pyrosetta.rosetta.protocols.sic_dock.get_leap_lower_stub(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → pyrosetta.rosetta.protocols.sic_dock.Vec3

C++: protocols::sic_dock::get_leap_lower_stub(const class core::pose::Pose &, unsigned long) –> struct protocols::sic_dock::Vec3

pyrosetta.rosetta.protocols.sic_dock.get_leap_upper_stub(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) → pyrosetta.rosetta.protocols.sic_dock.Vec3

C++: protocols::sic_dock::get_leap_upper_stub(const class core::pose::Pose &, unsigned long) –> struct protocols::sic_dock::Vec3

pyrosetta.rosetta.protocols.sic_dock.get_rg(p: pyrosetta.rosetta.core.pose.Pose) → float

C++: protocols::sic_dock::get_rg(const class core::pose::Pose &) –> double

pyrosetta.rosetta.protocols.sic_dock.get_termini_from_pose(*args, **kwargs)

Overloaded function.

1. get_termini_from_pose(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, lowers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t, uppers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t) -> None

C++: protocols::sic_dock::get_termini_from_pose(const class core::pose::Pose &, unsigned long, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &) –> void

2. get_termini_from_pose(pose: pyrosetta.rosetta.core.pose.Pose, lowers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t, uppers: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_protocols_sic_dock_Vec3_t) -> None

C++: protocols::sic_dock::get_termini_from_pose(const class core::pose::Pose &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &, class utility::vector1<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3>, class std::allocator<struct std::pair<unsigned long, struct protocols::sic_dock::Vec3> > > &) –> void

pyrosetta.rosetta.protocols.sic_dock.get_xform_stats(sir: pyrosetta.rosetta.numeric.xyzTransform_double_t, sjr: pyrosetta.rosetta.numeric.xyzTransform_double_t, dx: float, dy: float, dz: float, ex: float, ey: float, ez: float) → None

C++: protocols::sic_dock::get_xform_stats(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, double &, double &, double &, double &, double &, double &) –> void

pyrosetta.rosetta.protocols.sic_dock.getxform(move_resi: pyrosetta.rosetta.core.conformation.Residue, fixd_resi: pyrosetta.rosetta.core.conformation.Residue) → pyrosetta.rosetta.core.kinematics.Stub

C++: protocols::sic_dock::getxform(const class core::conformation::Residue &, const class core::conformation::Residue &) –> class core::kinematics::Stub

pyrosetta.rosetta.protocols.sic_dock.invstub(a: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::invstub(const class numeric::xyzTransform<double> &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.linker_count2score(count: int) → float

C++: protocols::sic_dock::linker_count2score(unsigned long) –> double

pyrosetta.rosetta.protocols.sic_dock.make_Cx(*args, **kwargs)

Overloaded function.

1. make_Cx(pose: pyrosetta.rosetta.core.pose.Pose, N: int) -> None

2. make_Cx(pose: pyrosetta.rosetta.core.pose.Pose, N: int, axis: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

C++: protocols::sic_dock::make_Cx(class core::pose::Pose &, int, class numeric::xyzVector<double>) –> void

pyrosetta.rosetta.protocols.sic_dock.multstubs(a: pyrosetta.rosetta.numeric.xyzTransform_double_t, b: pyrosetta.rosetta.numeric.xyzTransform_double_t) → pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::multstubs(const class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.neighbor_count(*args, **kwargs)

Overloaded function.

1. neighbor_count(pose: pyrosetta.rosetta.core.pose.Pose, ires: int) -> int

2. neighbor_count(pose: pyrosetta.rosetta.core.pose.Pose, ires: int, distance_threshold: float) -> int

C++: protocols::sic_dock::neighbor_count(const class core::pose::Pose &, int, double) –> int

pyrosetta.rosetta.protocols.sic_dock.pose1_has_most_CBs(pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose) → bool

C++: protocols::sic_dock::pose1_has_most_CBs(const class core::pose::Pose &, const class core::pose::Pose &) –> bool

pyrosetta.rosetta.protocols.sic_dock.pose_with_most_CBs(pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::sic_dock::pose_with_most_CBs(const class core::pose::Pose &, const class core::pose::Pose &) –> const class core::pose::Pose &

pyrosetta.rosetta.protocols.sic_dock.projperp(u: pyrosetta.rosetta.numeric.xyzVector_double_t, v: pyrosetta.rosetta.numeric.xyzVector_double_t) → pyrosetta.rosetta.numeric.xyzVector_double_t

C++: protocols::sic_dock::projperp(const class numeric::xyzVector<double> &, const class numeric::xyzVector<double> &) –> class numeric::xyzVector<double>

pyrosetta.rosetta.protocols.sic_dock.range(beg: int, end: int) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::sic_dock::range(unsigned long, unsigned long) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

pyrosetta.rosetta.protocols.sic_dock.read_biounit(*args, **kwargs)

Overloaded function.

1. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose) -> bool

2. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, max_res: int) -> bool

3. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, max_res: int, debug: bool) -> bool

C++: protocols::sic_dock::read_biounit(const std::string &, class core::pose::Pose &, int, bool) –> bool

4. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double) -> bool

5. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double, max_res: int) -> bool

6. read_biounit(fname: str, pose: pyrosetta.rosetta.core.pose.Pose, bfactors: pyrosetta.rosetta.utility.vector1_double, occupancy: pyrosetta.rosetta.utility.vector1_double, max_res: int, debug: bool) -> bool

C++: protocols::sic_dock::read_biounit(const std::string &, class core::pose::Pose &, class utility::vector1<double, class std::allocator<double> > &, class utility::vector1<double, class std::allocator<double> > &, int, bool) –> bool

pyrosetta.rosetta.protocols.sic_dock.residue_is_floppy(*args, **kwargs)

Overloaded function.

1. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int) -> bool

2. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, ttrim_cut: float) -> bool

3. residue_is_floppy(pose: pyrosetta.rosetta.core.pose.Pose, ir: int, ttrim_cut: float, nfold: int) -> bool

C++: protocols::sic_dock::residue_is_floppy(const class core::pose::Pose &, const unsigned long, const double, const unsigned long) –> bool

pyrosetta.rosetta.protocols.sic_dock.rot_pose(*args, **kwargs)

Overloaded function.

1. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t) -> None

2. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, start: int) -> None

3. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzMatrix<double> &, unsigned long, unsigned long) –> void

4. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

5. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None

6. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, rot: pyrosetta.rosetta.numeric.xyzMatrix_double_t, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzMatrix<double> &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

7. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float) -> None

8. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, start: int) -> None

9. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, const double &, unsigned long, unsigned long) –> void

10. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

11. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None

12. rot_pose(pose: pyrosetta.rosetta.core.pose.Pose, axis: pyrosetta.rosetta.numeric.xyzVector_double_t, ang: float, cen: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::rot_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, const double &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.slide_into_contact_and_score(sic: pyrosetta.rosetta.protocols.sic_dock.SICFast, sfxn: pyrosetta.rosetta.protocols.sic_dock.RigidScore, xa: pyrosetta.rosetta.numeric.xyzTransform_double_t, xb: pyrosetta.rosetta.numeric.xyzTransform_double_t, ori: pyrosetta.rosetta.numeric.xyzVector_double_t, score: float) → float

C++: protocols::sic_dock::slide_into_contact_and_score(const class protocols::sic_dock::SICFast &, const class protocols::sic_dock::RigidScore &, class numeric::xyzTransform<double> &, const class numeric::xyzTransform<double> &, const class numeric::xyzVector<double> &, double &) –> double

pyrosetta.rosetta.protocols.sic_dock.slide_into_contact_and_score_DEPRICATED(sic: pyrosetta.rosetta.protocols.sic_dock.SICFast, sfxn: pyrosetta.rosetta.protocols.sic_dock.RigidScore, xa: pyrosetta.rosetta.core.kinematics.Stub, xb: pyrosetta.rosetta.core.kinematics.Stub, ori: pyrosetta.rosetta.numeric.xyzVector_double_t, score: float) → float

C++: protocols::sic_dock::slide_into_contact_and_score_DEPRICATED(const class protocols::sic_dock::SICFast &, const class protocols::sic_dock::RigidScore &, class core::kinematics::Stub &, const class core::kinematics::Stub &, const class numeric::xyzVector<double> &, double &) –> double

pyrosetta.rosetta.protocols.sic_dock.trans_pose(*args, **kwargs)

Overloaded function.

1. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

2. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int) -> None

3. trans_pose(pose: pyrosetta.rosetta.core.pose.Pose, trans: pyrosetta.rosetta.numeric.xyzVector_double_t, start: int, end: int) -> None

C++: protocols::sic_dock::trans_pose(class core::pose::Pose &, const class numeric::xyzVector<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.vec3_to_stub(*args, **kwargs)

Overloaded function.

1. vec3_to_stub(v3: pyrosetta.rosetta.protocols.sic_dock.Vec3) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::vec3_to_stub(const struct protocols::sic_dock::Vec3 &) –> class numeric::xyzTransform<double>

2. vec3_to_stub(xform: pyrosetta.rosetta.numeric.xyzTransform_double_t, v3: pyrosetta.rosetta.protocols.sic_dock.Vec3) -> pyrosetta.rosetta.numeric.xyzTransform_double_t

C++: protocols::sic_dock::vec3_to_stub(const class numeric::xyzTransform<double> &, const struct protocols::sic_dock::Vec3 &) –> class numeric::xyzTransform<double>

pyrosetta.rosetta.protocols.sic_dock.xform_pose(*args, **kwargs)

Overloaded function.

1. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub) -> None

2. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub, sres: int) -> None

3. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub, sres: int, eres: int) -> None

C++: protocols::sic_dock::xform_pose(class core::pose::Pose &, const class core::kinematics::Stub &, unsigned long, unsigned long) –> void

4. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t) -> None

5. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int) -> None

6. xform_pose(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t, sres: int, eres: int) -> None

C++: protocols::sic_dock::xform_pose(class core::pose::Pose &, const class numeric::xyzTransform<double> &, unsigned long, unsigned long) –> void

pyrosetta.rosetta.protocols.sic_dock.xform_pose_rev(*args, **kwargs)

Overloaded function.

1. xform_pose_rev(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.core.kinematics.Stub) -> None

C++: protocols::sic_dock::xform_pose_rev(class core::pose::Pose &, const class core::kinematics::Stub &) –> void

2. xform_pose_rev(pose: pyrosetta.rosetta.core.pose.Pose, s: pyrosetta.rosetta.numeric.xyzTransform_double_t) -> None

C++: protocols::sic_dock::xform_pose_rev(class core::pose::Pose &, const class numeric::xyzTransform<double> &) –> void

class pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta

Bases: xyzStripeHashWithMeta_float_t

grid_size(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → float

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::grid_size() const –> float

init(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t, atoms: pyrosetta.rosetta.utility.vector1_numeric_xyzVector_float_t, meta: pyrosetta.rosetta.utility.vector1_float) → None

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::init(const class utility::vector1<class numeric::xyzVector<float>, class std::allocator<class numeric::xyzVector<float> > > &, const class utility::vector1<float, class std::allocator<float> > &) –> void

init_with_pose(*args, **kwargs)

Overloaded function.

1. init_with_pose(self: pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta, p: pyrosetta.rosetta.core.pose.Pose) -> None

2. init_with_pose(self: pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta, p: pyrosetta.rosetta.core.pose.Pose, m: pyrosetta.rosetta.core.pose.PoseCoordPickMode) -> None

C++: protocols::sic_dock::xyzStripeHashPoseWithMeta::init_with_pose(const class core::pose::Pose &, enum core::pose::PoseCoordPickMode) –> void

3. init_with_pose(self: pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta, p: pyrosetta.rosetta.core.pose.Pose, amap: pyrosetta.rosetta.core.id.AtomID_Map_double_t) -> None

C++: protocols::sic_dock::xyzStripeHashPoseWithMeta::init_with_pose(const class core::pose::Pose &, const class core::id::AtomID_Map<double>) –> void

4. init_with_pose(self: pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta, p: pyrosetta.rosetta.core.pose.Pose, meta_in: pyrosetta.rosetta.utility.vector1_double) -> None

5. init_with_pose(self: pyrosetta.rosetta.protocols.sic_dock.xyzStripeHashPoseWithMeta, p: pyrosetta.rosetta.core.pose.Pose, meta_in: pyrosetta.rosetta.utility.vector1_double, m: pyrosetta.rosetta.core.pose.PoseCoordPickMode) -> None

C++: protocols::sic_dock::xyzStripeHashPoseWithMeta::init_with_pose(const class core::pose::Pose &, const class utility::vector1<double, class std::allocator<double> > &, enum core::pose::PoseCoordPickMode) –> void

natom(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → int

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::natom() const –> int

nbcount(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t, v_in: pyrosetta.rosetta.numeric.xyzVector_float_t) → int

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::nbcount(const class numeric::xyzVector<float> &) const –> int

sanity_check(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → bool

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::sanity_check() const –> bool

translation(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → pyrosetta.rosetta.numeric.xyzVector_float_t

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::translation() const –> const class numeric::xyzVector<float>

xdim(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → int

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::xdim() const –> int

ydim(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → int

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::ydim() const –> int

zdim(self: pyrosetta.rosetta.numeric.geometry.hashing.xyzStripeHashWithMeta_float_t) → int

C++: numeric::geometry::hashing::xyzStripeHashWithMeta<float>::zdim() const –> int