working_parameters

Bindings for protocols::stepwise::modeler::working_parameters namespace

class pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters

Bases: pybind11_builtins.pybind11_object

actually_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::actually_moving_res() const –> unsigned long

apply_full_to_sub_mapping(*args, **kwargs)

Overloaded function.

  1. apply_full_to_sub_mapping(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res_vector: pyrosetta.rosetta.utility.vector1_unsigned_long) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

  1. apply_full_to_sub_mapping(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping(const unsigned long) const –> unsigned long

assign(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, : pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::operator=(const class protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters &) –> class protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters &

calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::calc_rms_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

chain_boundaries(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::chain_boundaries() const –> const class utility::vector1<struct std::pair<unsigned long, unsigned long>, class std::allocator<struct std::pair<unsigned long, unsigned long> > > &

const_full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_full_to_sub() const –> const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

const_sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_sub_to_full() const –> const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

create_sub_to_full_map(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, full_to_sub: pyrosetta.rosetta.std.map_unsigned_long_unsigned_long) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::create_sub_to_full_map(const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &) const –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > >

cutpoint_closed_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_closed_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

cutpoint_open_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_open_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::fixed_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

full_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_sequence() const –> const std::string &

full_to_sub(*args, **kwargs)

Overloaded function.

  1. full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub() –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

  1. full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub(const unsigned long) const –> unsigned long

gap_size(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::gap_size() const –> const unsigned long &

is_internal(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_internal() const –> const bool &

is_prepend(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_prepend() const –> const bool &

is_working_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_working_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::moving_res() const –> const unsigned long &

partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.ObjexxFCL.FArray1D_bool_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::partition_definition() const –> const class ObjexxFCL::FArray1D<bool> &

sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sequence() const –> const std::string &

set_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, calc_rms_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_calc_rms_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_chain_boundaries(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_chain_boundaries(const class utility::vector1<struct std::pair<unsigned long, unsigned long>, class std::allocator<struct std::pair<unsigned long, unsigned long> > > &) –> void

set_cutpoint_closed_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_closed_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_cutpoint_open_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_open_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, fixed_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_fixed_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_full_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: str) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_sequence(const std::string &) –> void

set_full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.std.map_unsigned_long_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_to_sub(const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &) –> void

set_gap_size(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_gap_size(const unsigned long &) –> void

set_is_internal(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_internal(const bool &) –> void

set_is_prepend(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_prepend(const bool &) –> void

set_is_working_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_working_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_moving_res(const unsigned long &) –> void

set_partition_definition(*args, **kwargs)

Overloaded function.

  1. set_partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.ObjexxFCL.FArray1D_bool_t) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition(const class ObjexxFCL::FArray1D<bool> &) –> void

  1. set_partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, partition_definition_vector: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: str) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_sequence(const std::string &) –> void

set_working_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_calc_rms_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_calc_rms_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_fixed_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_fixed_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_moving_partition_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_partition_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_moving_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_res_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_native_pose(*args, **kwargs)

Overloaded function.

  1. set_working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose(class std::shared_ptr<class core::pose::Pose> &) –> void

  1. set_working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

sub_to_full(*args, **kwargs)

Overloaded function.

  1. sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full() –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

  1. sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full(const unsigned long) const –> unsigned long

working_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_calc_rms_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_fixed_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_partition_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_partition_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res() const –> const unsigned long &

working_moving_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_suite(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite() const –> const unsigned long &

working_moving_suite_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.core.pose.Pose

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

working_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_res_list() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

working_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_sequence() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters

Bases: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters

actually_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::actually_moving_res() const –> unsigned long

add_virt_res_as_root(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::add_virt_res_as_root() const –> const bool &

apply_full_to_sub_mapping(*args, **kwargs)

Overloaded function.

  1. apply_full_to_sub_mapping(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res_vector: pyrosetta.rosetta.utility.vector1_unsigned_long) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

  1. apply_full_to_sub_mapping(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, res: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping(const unsigned long) const –> unsigned long

assign(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, : pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::operator=(const class protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters &) –> class protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters &

block_stack_above_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::block_stack_above_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

block_stack_below_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::block_stack_below_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::calc_rms_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

chain_boundaries(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::chain_boundaries() const –> const class utility::vector1<struct std::pair<unsigned long, unsigned long>, class std::allocator<struct std::pair<unsigned long, unsigned long> > > &

const_full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_full_to_sub() const –> const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

const_sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_sub_to_full() const –> const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

create_sub_to_full_map(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, full_to_sub: pyrosetta.rosetta.std.map_unsigned_long_unsigned_long) pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::create_sub_to_full_map(const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &) const –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > >

cutpoint_closed_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_closed_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

cutpoint_open_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_open_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

five_prime_chain_break_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::five_prime_chain_break_res() const –> const unsigned long &

fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::fixed_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

floating_base(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::floating_base() const –> const bool &

floating_base_anchor_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::floating_base_anchor_res() const –> const unsigned long &

fold_tree(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.core.kinematics.FoldTree

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::fold_tree() const –> const class core::kinematics::FoldTree &

force_anti_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::force_anti_chi_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

force_north_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::force_north_sugar_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

force_south_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::force_south_sugar_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

force_syn_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::force_syn_chi_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

full_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_sequence() const –> const std::string &

full_to_sub(*args, **kwargs)

Overloaded function.

  1. full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub() –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

  1. full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub(const unsigned long) const –> unsigned long

gap_size(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::gap_size() const –> const unsigned long &

gap_size_to_anchor(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::gap_size_to_anchor() const –> unsigned long

global_sample_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::global_sample_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

input_res_vectors(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::input_res_vectors() const –> const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &

is_internal(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_internal() const –> const bool &

is_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.ObjexxFCL.FArray1D_unsigned_long_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_moving_res() const –> const class ObjexxFCL::FArray1D<unsigned long> &

is_pre_proline(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_pre_proline() const –> const class utility::vector1<bool, class std::allocator<bool> >

is_prepend(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_prepend() const –> const bool &

is_prepend_map(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.std.map_unsigned_long_bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_prepend_map() const –> const class std::map<unsigned long, bool, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, bool> > > &

is_simple_full_length_job_params(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_simple_full_length_job_params() const –> const bool &

is_working_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_working_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::moving_res() const –> const unsigned long &

native_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::native_alignment() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

output_extra_RMSDs(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::output_extra_RMSDs() const –> const bool &

partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.ObjexxFCL.FArray1D_bool_t

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::partition_definition() const –> const class ObjexxFCL::FArray1D<bool> &

protonated_H1_adenosine_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::protonated_H1_adenosine_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

rebuild_bulge_mode(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::rebuild_bulge_mode() const –> const bool &

sample_both_sugar_base_rotamer(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) bool

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::sample_both_sugar_base_rotamer() const –> const bool &

sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sequence() const –> const std::string &

set_add_virt_res_as_root(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_add_virt_res_as_root(const bool) –> void

set_block_stack_above_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, block_stack_above_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_block_stack_above_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_block_stack_below_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, block_stack_below_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_block_stack_below_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, calc_rms_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_calc_rms_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_chain_boundaries(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_chain_boundaries(const class utility::vector1<struct std::pair<unsigned long, unsigned long>, class std::allocator<struct std::pair<unsigned long, unsigned long> > > &) –> void

set_cutpoint_closed_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_closed_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_cutpoint_open_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_open_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_five_prime_chain_break_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_five_prime_chain_break_res(const unsigned long &) –> void

set_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, fixed_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_fixed_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_floating_base(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_floating_base(const bool) –> void

set_floating_base_anchor_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_floating_base_anchor_res(const unsigned long) –> void

set_fold_tree(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.core.kinematics.FoldTree) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_fold_tree(const class core::kinematics::FoldTree &) –> void

set_force_anti_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_force_anti_chi_res_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_force_north_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_force_north_sugar_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_force_south_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_force_south_sugar_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_force_syn_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_force_syn_chi_res_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_full_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: str) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_sequence(const std::string &) –> void

set_full_to_sub(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.std.map_unsigned_long_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_to_sub(const class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &) –> void

set_gap_size(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_gap_size(const unsigned long &) –> void

set_global_sample_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_global_sample_res_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_input_res_vectors(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_input_res_vectors(const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &) –> void

set_is_internal(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_internal(const bool &) –> void

set_is_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.ObjexxFCL.FArray1D_unsigned_long_t) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_is_moving_res(const class ObjexxFCL::FArray1D<unsigned long> &) –> void

set_is_prepend(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_prepend(const bool &) –> void

set_is_prepend_map(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.std.map_unsigned_long_bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_is_prepend_map(const class std::map<unsigned long, bool, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, bool> > > &) –> void

set_is_simple_full_length_job_params(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_is_simple_full_length_job_params(const bool) –> void

set_is_working_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_working_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: int) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_moving_res(const unsigned long &) –> void

set_native_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_native_alignment(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_output_extra_RMSDs(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_output_extra_RMSDs(const bool) –> void

set_partition_definition(*args, **kwargs)

Overloaded function.

  1. set_partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.ObjexxFCL.FArray1D_bool_t) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition(const class ObjexxFCL::FArray1D<bool> &) –> void

  1. set_partition_definition(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, partition_definition_vector: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_protonated_H1_adenosine_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_protonated_H1_adenosine_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_rebuild_bulge_mode(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_rebuild_bulge_mode(const bool) –> void

set_sample_both_sugar_base_rotamer(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: bool) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_sample_both_sugar_base_rotamer(const bool) –> void

set_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: str) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_sequence(const std::string &) –> void

set_terminal_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, terminal_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_terminal_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_best_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_working_best_alignment(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_bridge_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_working_bridge_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_calc_rms_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_calc_rms_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_fixed_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_fixed_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_moving_partition_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, working_moving_partition_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_partition_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_moving_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_res_list(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_native_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_working_native_alignment(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_working_native_pose(*args, **kwargs)

Overloaded function.

  1. set_working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose(class std::shared_ptr<class core::pose::Pose> &) –> void

  1. set_working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_working_superimpose_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters, working_superimpose_res: pyrosetta.rosetta.utility.vector1_unsigned_long) None

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::set_working_superimpose_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

sub_to_full(*args, **kwargs)

Overloaded function.

  1. sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) -> pyrosetta.rosetta.std.map_unsigned_long_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full() –> class std::map<unsigned long, unsigned long, struct std::less<unsigned long>, class std::allocator<struct std::pair<const unsigned long, unsigned long> > > &

  1. sub_to_full(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters, i: int) -> int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full(const unsigned long) const –> unsigned long

terminal_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::terminal_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_best_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_best_alignment() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_block_stack_above_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_block_stack_above_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_block_stack_below_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_block_stack_below_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_bridge_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_bridge_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_calc_rms_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_calc_rms_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_fixed_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_fixed_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_floating_base_anchor_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_floating_base_anchor_res() const –> unsigned long

working_force_anti_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_force_anti_chi_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_force_north_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_force_north_sugar_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_force_south_sugar_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_force_south_sugar_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_force_syn_chi_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_force_syn_chi_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_global_sample_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_global_sample_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_partition_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_partition_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res() const –> const unsigned long &

working_moving_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_moving_suite(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite() const –> const unsigned long &

working_moving_suite_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_native_alignment(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_native_alignment() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_native_pose(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.core.pose.Pose

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

working_protonated_H1_adenosine_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_protonated_H1_adenosine_list() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_reference_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) int

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_reference_res() const –> unsigned long

working_res_list(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_res_list() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

working_sequence(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseBasicWorkingParameters) str

C++: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_sequence() const –> const std::string &

working_superimpose_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_superimpose_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

working_terminal_res(self: pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters) pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_terminal_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.figure_out_rebuild_bulge_mode(pose: pyrosetta.rosetta.core.pose.Pose, rebuild_res: int) bool

C++: protocols::stepwise::modeler::working_parameters::figure_out_rebuild_bulge_mode(const class core::pose::Pose &, const unsigned long) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.figure_out_sample_both_sugar_base_rotamer(pose: pyrosetta.rosetta.core.pose.Pose, floating_base: bool, rebuild_suite: int) bool

C++: protocols::stepwise::modeler::working_parameters::figure_out_sample_both_sugar_base_rotamer(const class core::pose::Pose &, const bool, const unsigned long) –> bool

pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.setup_working_parameters_explicit(rebuild_res: int, pose: pyrosetta.rosetta.core.pose.Pose, native_pose: pyrosetta.rosetta.core.pose.Pose) pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters

C++: protocols::stepwise::modeler::working_parameters::setup_working_parameters_explicit(const unsigned long, const class core::pose::Pose &, class std::shared_ptr<const class core::pose::Pose>) –> class std::shared_ptr<class protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters>

pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.setup_working_parameters_for_swa(moving_res_list: pyrosetta.rosetta.utility.vector1_unsigned_long, pose: pyrosetta.rosetta.core.pose.Pose, native_pose: pyrosetta.rosetta.core.pose.Pose, bridge_res: pyrosetta.rosetta.utility.vector1_unsigned_long, working_minimize_res: pyrosetta.rosetta.utility.vector1_unsigned_long) pyrosetta.rosetta.protocols.stepwise.modeler.working_parameters.StepWiseWorkingParameters

C++: protocols::stepwise::modeler::working_parameters::setup_working_parameters_for_swa(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class core::pose::Pose &, class std::shared_ptr<const class core::pose::Pose>, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class std::shared_ptr<class protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters>