loop_closureΒΆ
Bindings for protocols::loops::loop_closure namespace
Bindings for protocols::loops::loop_closure namespace
EXCN_Loop_not_closedFoldTreeFromLoopsFoldTreeFromLoopsCreatorGuardedLoopsFromFileJSONFormattedLoopsFileReaderLoopLoopConfigurationLoopFromFileDataLoopMoverFactoryLoop_ltLoopsLoopsFileDataLoopsFileIOLoopsFileLoaderLoopsFileLoaderCreatorPoseNumberedLoopFileReaderRationalLoopComparatorResidueIdentifierSerializedLoopaddScoresForLoopParts()add_coordinate_constraints_to_pose()add_cutpoint_variants()add_loop_flank_residues_bb_to_movemap()add_single_cutpoint_variant()apply_sequence_mapping()ccd_close_loops()compute_ss_regions()deep_copy()define_scorable_core_from_secondary_structure()extend_sequence_mapping()extract_continuous_chunks()extract_secondary_structure_chunks()filter_loop_neighbors_by_distance()find_non_protein_chunks()fix_with_coord_cst()fold_tree_from_loops()get_cen_scorefxn()get_fa_scorefxn()has_severe_pep_bond_geom_issues()idealize_loop()loop_local_rmsd()loop_rmsd()loop_rmsd_with_superimpose()loop_rmsd_with_superimpose_core()loopfinder()loops_around_residues()loops_from_string()loops_set_move_map()move_map_from_loop()move_map_from_loops()native_loop_core_CA_rmsd()pick_loops_chainbreak()pick_loops_unaligned()read_loop_fragments()remove_cutpoint_variants()remove_missing_density()remove_short_chunks()remove_small_gaps()safe_set_extended_torsions_and_idealize_loops()select_loop_frags()select_loop_residues()serialized_loops_from_string()set_extended_torsions()set_extended_torsions_and_idealize_loops()set_loop_cutpoint_in_pose_fold_tree()set_move_map_for_centroid_loop()set_secstruct_from_dssp()set_secstruct_from_psipred_ss2()set_single_loop_fold_tree()split_by_ca_ca_dist()split_by_resSeq()trim_back_sequence_mapping()validate_loop_start_stop()LoopRebuildLoopRefineRBSegmentRelaxImplRBSegmentRelax_main()ddG_main()RNAAtomType_xmlNodeadd_all_rosetta_options()add_rosetta_options_0()add_rosetta_options_1()add_rosetta_options_10()add_rosetta_options_11()add_rosetta_options_12()add_rosetta_options_13()add_rosetta_options_14()add_rosetta_options_15()add_rosetta_options_2()add_rosetta_options_3()add_rosetta_options_4()add_rosetta_options_5()add_rosetta_options_6()add_rosetta_options_7()add_rosetta_options_8()add_rosetta_options_9()tm