pose_stream

Bindings for core::import_pose::pose_stream namespace

class pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream

Bases: PoseInputStream

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::operator=(const class core::import_pose::pose_stream::ExtendedPoseInputStream &) –> class core::import_pose::pose_stream::ExtendedPoseInputStream &

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) → str

Get a string describing the last pose and where it came from.

Input tag + filename.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) → bool

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::has_another_pose() –> bool

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.ExtendedPoseInputStream) → None

C++: core::import_pose::pose_stream::ExtendedPoseInputStream::reset() –> void

class pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream

Bases: PoseInputStream

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::operator=(const class core::import_pose::pose_stream::LazySilentFilePoseInputStream &) –> class core::import_pose::pose_stream::LazySilentFilePoseInputStream &

filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) → pyrosetta.rosetta.utility.vector1_utility_file_FileName

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames() const –> const class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> > &

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) → str

Get a string describing the last pose and where it came from.

Input tag + filename.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) → bool

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::has_another_pose() –> bool

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.LazySilentFilePoseInputStream) → None

C++: core::import_pose::pose_stream::LazySilentFilePoseInputStream::reset() –> void

class pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream

Bases: PoseInputStream

add_pose_input_stream(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, input: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream) → None

C++: core::import_pose::pose_stream::MetaPoseInputStream::add_pose_input_stream(class std::shared_ptr<class core::import_pose::pose_stream::PoseInputStream>) –> void

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream

C++: core::import_pose::pose_stream::MetaPoseInputStream::operator=(const class core::import_pose::pose_stream::MetaPoseInputStream &) –> class core::import_pose::pose_stream::MetaPoseInputStream &

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::MetaPoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::MetaPoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_input_streams(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_import_pose_pose_stream_PoseInputStream_t

C++: core::import_pose::pose_stream::MetaPoseInputStream::get_input_streams() –> class utility::vector1<class std::shared_ptr<class core::import_pose::pose_stream::PoseInputStream>, class std::allocator<class std::shared_ptr<class core::import_pose::pose_stream::PoseInputStream> > >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream) → str

Get a string describing the last pose and where it came from.

Typically, filename + number from file + input tag, but depends on the particular PoseInputStream subclass.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::MetaPoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream) → bool

C++: core::import_pose::pose_stream::MetaPoseInputStream::has_another_pose() –> bool

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream) → None

C++: core::import_pose::pose_stream::MetaPoseInputStream::reset() –> void

class pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream

Bases: PoseInputStream

add_list_filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, list_fns: pyrosetta.rosetta.utility.vector1_utility_file_FileName) → None

adds a list of files each containing lists of PDBs

C++: core::import_pose::pose_stream::PDBPoseInputStream::add_list_filenames(class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> >) –> void

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream

C++: core::import_pose::pose_stream::PDBPoseInputStream::operator=(const class core::import_pose::pose_stream::PDBPoseInputStream &) –> class core::import_pose::pose_stream::PDBPoseInputStream &

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::PDBPoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::PDBPoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PDBPoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream) → pyrosetta.rosetta.utility.vector1_utility_file_FileName

C++: core::import_pose::pose_stream::PDBPoseInputStream::get_filenames() –> class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream) → str

Get a string describing the last pose and where it came from.

PDB filename.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::PDBPoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream) → bool

C++: core::import_pose::pose_stream::PDBPoseInputStream::has_another_pose() –> bool

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream) → None

C++: core::import_pose::pose_stream::PDBPoseInputStream::reset() –> void

set_filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.PDBPoseInputStream, filenames: pyrosetta.rosetta.utility.vector1_utility_file_FileName) → None

C++: core::import_pose::pose_stream::PDBPoseInputStream::set_filenames(class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> >) –> void

class pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream

Bases: pybind11_object

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream

C++: core::import_pose::pose_stream::PoseInputStream::operator=(const class core::import_pose::pose_stream::PoseInputStream &) –> class core::import_pose::pose_stream::PoseInputStream &

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::PoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::PoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream) → str

Get a string describing the last pose and where it came from.

Implemented by child classes. Typically, filename + number from file + input tag.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::PoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream) → bool

C++: core::import_pose::pose_stream::PoseInputStream::has_another_pose() –> bool

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream) → None

C++: core::import_pose::pose_stream::PoseInputStream::reset() –> void

class pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream

Bases: PoseInputStream

assign(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, : pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::operator=(const class core::import_pose::pose_stream::SilentFilePoseInputStream &) –> class core::import_pose::pose_stream::SilentFilePoseInputStream &

energy_cut(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → float

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::energy_cut() const –> double

filenames(*args, **kwargs)

Overloaded function.

1. filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, filenames: pyrosetta.rosetta.utility.vector1_utility_file_FileName) -> None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::filenames(const class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> > &) –> void

2. filenames(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> pyrosetta.rosetta.utility.vector1_utility_file_FileName

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::filenames() const –> class utility::vector1<class utility::file::FileName, class std::allocator<class utility::file::FileName> >

fill_pose(*args, **kwargs)

Overloaded function.

1. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) -> None

2. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet, metapatches: bool) -> None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose(class core::pose::Pose &, const class core::chemical::ResidueTypeSet &, const bool) –> void

3. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, : pyrosetta.rosetta.core.pose.Pose) -> None

4. fill_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, : pyrosetta.rosetta.core.pose.Pose, metapatches: bool) -> None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose(class core::pose::Pose &, const bool) –> void

get_all_poses(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, residue_set: pyrosetta.rosetta.core.chemical.ResidueTypeSet) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_core_pose_Pose_t

C++: core::import_pose::pose_stream::PoseInputStream::get_all_poses(const class core::chemical::ResidueTypeSet &) –> class utility::vector1<class std::shared_ptr<class core::pose::Pose>, class std::allocator<class std::shared_ptr<class core::pose::Pose> > >

get_last_pose_descriptor_string(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → str

Get a string describing the last pose and where it came from.

Input tag + filename.

Vikram K. Mulligan (vmulligan.org).

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::get_last_pose_descriptor_string() const –> std::string

has_another_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → bool

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::has_another_pose() –> bool

next_struct(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → pyrosetta.rosetta.core.io.silent.SilentStruct

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::next_struct() –> class std::shared_ptr<class core::io::silent::SilentStruct>

preprocess_pose(self: pyrosetta.rosetta.core.import_pose.pose_stream.PoseInputStream, pose: pyrosetta.rosetta.core.pose.Pose) → None

Perform common operations on a Pose dependent on command-line

options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes.

C++: core::import_pose::pose_stream::PoseInputStream::preprocess_pose(class core::pose::Pose &) –> void

renumber_decoys(*args, **kwargs)

Overloaded function.

1. renumber_decoys(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting: bool) -> None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::renumber_decoys(const bool) –> void

2. renumber_decoys(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> bool

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::renumber_decoys() const –> bool

reset(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::reset() –> void

set_order_by_energy(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting: bool) → None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::set_order_by_energy(const bool &) –> void

set_record_source(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, setting: bool) → None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::set_record_source(const bool &) –> void

set_silent_file_data(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, sfd: pyrosetta.rosetta.core.io.silent.SilentFileData) → None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::set_silent_file_data(class std::shared_ptr<class core::io::silent::SilentFileData> &) –> void

silent_file_data(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) → pyrosetta.rosetta.core.io.silent.SilentFileData

Access the SilentFileData owning pointer directly.

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::silent_file_data() –> class std::shared_ptr<class core::io::silent::SilentFileData>

tags(*args, **kwargs)

Overloaded function.

1. tags(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream, tags: pyrosetta.rosetta.utility.vector1_std_string) -> None

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::tags(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

2. tags(self: pyrosetta.rosetta.core.import_pose.pose_stream.SilentFilePoseInputStream) -> pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::pose_stream::SilentFilePoseInputStream::tags() const –> class utility::vector1<std::string, class std::allocator<std::string > >

pyrosetta.rosetta.core.import_pose.pose_stream.streams_from_cmd_line(*args, **kwargs)

Overloaded function.

1. streams_from_cmd_line(do_renumber_decoys: bool) -> pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream

Get all input streams based on command-line input.

If renumber_decoys is true, silent file decoys are sorted in alphabetical order of tags.

C++: core::import_pose::pose_stream::streams_from_cmd_line(const bool) –> class core::import_pose::pose_stream::MetaPoseInputStream

2. streams_from_cmd_line() -> pyrosetta.rosetta.core.import_pose.pose_stream.MetaPoseInputStream

Get all input streams based on command-line input, sorting silent file decoys in alphabetical order of tags.

C++: core::import_pose::pose_stream::streams_from_cmd_line() –> class core::import_pose::pose_stream::MetaPoseInputStream