constraint_movers

Bindings for protocols::constraint_movers namespace

class pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover

Bases: Mover

class AtomSelector

Bases: pybind11_object

Members:

ALL

CA_ONLY

BB_ONLY

SC_TIP_ONLY

ALL = <AtomSelector.ALL: 0>

BB_ONLY = <AtomSelector.BB_ONLY: 2>

CA_ONLY = <AtomSelector.CA_ONLY: 1>

SC_TIP_ONLY = <AtomSelector.SC_TIP_ONLY: 3>

property name

property value

CA_only(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::CA_only() const –> bool

apply(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, : pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::operator=(const class protocols::constraint_movers::AddConstraintsToCurrentConformationMover &) –> class protocols::constraint_movers::AddConstraintsToCurrentConformationMover &

atom_selector(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover.AtomSelector

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::atom_selector() const –> enum protocols::constraint_movers::AddConstraintsToCurrentConformationMover::AtomSelector

bb_only(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::bb_only() const –> bool

bound_width(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → float

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::bound_width() –> double &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

coord_dev(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → float

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::coord_dev() –> double &

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

cst_weight(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → float

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::cst_weight() –> double &

fresh_instance(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

generate_constraints(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::generate_constraints(const class core::pose::Pose &) –> class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → str

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

inter_chain(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::inter_chain() –> bool &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

max_distance(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → float

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::max_distance() –> double &

min_seq_sep(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → int

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::min_seq_sep() –> unsigned long &

static mover_name() → str

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

residue_selector(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, selector: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::residue_selector(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

sc_tip_only(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::sc_tip_only() const –> bool

set_atom_selector(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, setting: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover.AtomSelector) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::set_atom_selector(const enum protocols::constraint_movers::AddConstraintsToCurrentConformationMover::AtomSelector) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

task_factory(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover, tf: pyrosetta.rosetta.core.pack.task.TaskFactory) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_bounded_func(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::use_bounded_func() –> bool &

use_distance_cst(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::use_distance_cst() –> bool &

use_harmonic_func(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMover) → bool

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMover::use_harmonic_func() –> bool &

class pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator, : pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator) → pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator::operator=(const class protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator &) –> class protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator) → str

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.constraint_movers.AddConstraintsToCurrentConformationMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::AddConstraintsToCurrentConformationMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover

Bases: Mover

apply(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::constraint_movers::ClearConstraintsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover, : pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover) → pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover

C++: protocols::constraint_movers::ClearConstraintsMover::operator=(const class protocols::constraint_movers::ClearConstraintsMover &) –> class protocols::constraint_movers::ClearConstraintsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ClearConstraintsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ClearConstraintsMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover) → str

C++: protocols::constraint_movers::ClearConstraintsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::constraint_movers::ClearConstraintsMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: protocols::constraint_movers::ClearConstraintsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ClearConstraintsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator, : pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator) → pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator

C++: protocols::constraint_movers::ClearConstraintsMoverCreator::operator=(const class protocols::constraint_movers::ClearConstraintsMoverCreator &) –> class protocols::constraint_movers::ClearConstraintsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ClearConstraintsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator) → str

C++: protocols::constraint_movers::ClearConstraintsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.constraint_movers.ClearConstraintsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ClearConstraintsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover

Bases: Mover

add_constraints(*args, **kwargs)

Overloaded function.

1. add_constraints(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, a: bool) -> None

C++: protocols::constraint_movers::ConstraintSetMover::add_constraints(const bool) –> void

2. add_constraints(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) -> bool

C++: protocols::constraint_movers::ConstraintSetMover::add_constraints() const –> bool

apply(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::constraint_movers::ConstraintSetMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, : pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) → pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover

C++: protocols::constraint_movers::ConstraintSetMover::operator=(const class protocols::constraint_movers::ConstraintSetMover &) –> class protocols::constraint_movers::ConstraintSetMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ConstraintSetMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

constraint_file(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, : str) → None

C++: protocols::constraint_movers::ConstraintSetMover::constraint_file(const std::string &) –> void

constraint_set(*args, **kwargs)

Overloaded function.

1. constraint_set(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, : pyrosetta.rosetta.core.scoring.constraints.ConstraintSet) -> None

C++: protocols::constraint_movers::ConstraintSetMover::constraint_set(class std::shared_ptr<const class core::scoring::constraints::ConstraintSet>) –> void

2. constraint_set(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) -> pyrosetta.rosetta.core.scoring.constraints.ConstraintSet

C++: protocols::constraint_movers::ConstraintSetMover::constraint_set() –> class std::shared_ptr<class core::scoring::constraints::ConstraintSet>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ConstraintSetMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) → str

C++: protocols::constraint_movers::ConstraintSetMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::constraint_movers::ConstraintSetMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: protocols::constraint_movers::ConstraintSetMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ConstraintSetMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

read_options(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover) → None

C++: protocols::constraint_movers::ConstraintSetMover::read_options() –> void

static register_options() → None

Associates relevant options with the ConstraintSetMover class

C++: protocols::constraint_movers::ConstraintSetMover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_cst_fa_file(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, file_name: str) → None

Set the (full-atom) constraint file name.

Vikram K. Mulligan (vmulligan.org).

C++: protocols::constraint_movers::ConstraintSetMover::set_cst_fa_file(const std::string &) –> void

set_cst_file(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, file_name: str) → None

Set the (centroid) constraint file name.

Vikram K. Mulligan (vmulligan.org).

C++: protocols::constraint_movers::ConstraintSetMover::set_cst_file(const std::string &) –> void

set_cst_map_file(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, file_name: str) → None

Set the constraint map file name.

C++: protocols::constraint_movers::ConstraintSetMover::set_cst_map_file(const std::string &) –> void

set_cst_map_file_contents(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMover, file_contents: str) → None

Set the constraint map file from previously loaded file contents in memory.

C++: protocols::constraint_movers::ConstraintSetMover::set_cst_map_file_contents(const std::string &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator, : pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator) → pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator

C++: protocols::constraint_movers::ConstraintSetMoverCreator::operator=(const class protocols::constraint_movers::ConstraintSetMoverCreator &) –> class protocols::constraint_movers::ConstraintSetMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ConstraintSetMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator) → str

C++: protocols::constraint_movers::ConstraintSetMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.constraint_movers.ConstraintSetMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ConstraintSetMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover

Bases: Mover

A Mover to output information about constraints

add_info_for_csts(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, cstlist: pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t, pose: pyrosetta.rosetta.core.pose.Pose, tag: str) → None

C++: protocols::constraint_movers::CstInfoMover::add_info_for_csts(const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &, class core::pose::Pose &, const std::string &) const –> void

apply(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, pose: pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::constraint_movers::CstInfoMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, : pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) → pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover

C++: protocols::constraint_movers::CstInfoMover::operator=(const class protocols::constraint_movers::CstInfoMover &) –> class protocols::constraint_movers::CstInfoMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::constraint_movers::CstInfoMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

cst_file(*args, **kwargs)

Overloaded function.

1. cst_file(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, setting: str) -> None

C++: protocols::constraint_movers::CstInfoMover::cst_file(const std::string &) –> void

2. cst_file(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) -> str

C++: protocols::constraint_movers::CstInfoMover::cst_file() const –> const std::string &

dump_cst_file(*args, **kwargs)

Overloaded function.

1. dump_cst_file(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, setting: str) -> None

C++: protocols::constraint_movers::CstInfoMover::dump_cst_file(const std::string &) –> void

2. dump_cst_file(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) -> str

C++: protocols::constraint_movers::CstInfoMover::dump_cst_file() const –> const std::string &

fresh_instance(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) → pyrosetta.rosetta.protocols.moves.Mover

required in the context of the parser/scripting scheme

C++: protocols::constraint_movers::CstInfoMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_constraints_from_file(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, filename: str, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::constraint_movers::CstInfoMover::get_constraints_from_file(const std::string &, const class core::pose::Pose &) const –> class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

get_constraints_from_pose(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::constraint_movers::CstInfoMover::get_constraints_from_pose(const class core::pose::Pose &) const –> class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > >

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) → str

C++: protocols::constraint_movers::CstInfoMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::constraint_movers::CstInfoMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None

parse XML tag (to use this Mover in Rosetta Scripts)

C++: protocols::constraint_movers::CstInfoMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prefix(*args, **kwargs)

Overloaded function.

1. prefix(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, setting: str) -> None

C++: protocols::constraint_movers::CstInfoMover::prefix(const std::string &) –> void

2. prefix(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) -> str

C++: protocols::constraint_movers::CstInfoMover::prefix() const –> const std::string &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::CstInfoMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

recursive(*args, **kwargs)

Overloaded function.

1. recursive(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, setting: bool) -> None

C++: protocols::constraint_movers::CstInfoMover::recursive(bool) –> void

2. recursive(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) -> bool

C++: protocols::constraint_movers::CstInfoMover::recursive() const –> bool

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover) -> None

2. show(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMover, output: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::constraint_movers::CstInfoMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator, : pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator) → pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator

C++: protocols::constraint_movers::CstInfoMoverCreator::operator=(const class protocols::constraint_movers::CstInfoMoverCreator &) –> class protocols::constraint_movers::CstInfoMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::CstInfoMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator) → str

C++: protocols::constraint_movers::CstInfoMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.constraint_movers.CstInfoMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::CstInfoMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover

Bases: Mover

apply(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, : pyrosetta.rosetta.core.pose.Pose) → None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, : pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover) → pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover

C++: protocols::constraint_movers::ResidueTypeConstraintMover::operator=(const class protocols::constraint_movers::ResidueTypeConstraintMover &) –> class protocols::constraint_movers::ResidueTypeConstraintMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ResidueTypeConstraintMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ResidueTypeConstraintMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str

A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover) → str

C++: protocols::constraint_movers::ResidueTypeConstraintMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str

C++: protocols::constraint_movers::ResidueTypeConstraintMover::mover_name() –> std::string

static name() → str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_AA_name3(*args, **kwargs)

Overloaded function.

1. set_AA_name3(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, setting: pyrosetta.rosetta.utility.vector1_std_string) -> None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::set_AA_name3(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

2. set_AA_name3(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, setting: str) -> None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::set_AA_name3(const std::string &) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_favor_bonus(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMover, setting: float) → None

C++: protocols::constraint_movers::ResidueTypeConstraintMover::set_favor_bonus(const double) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None

: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

2. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator, : pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator) → pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator

C++: protocols::constraint_movers::ResidueTypeConstraintMoverCreator::operator=(const class protocols::constraint_movers::ResidueTypeConstraintMoverCreator &) –> class protocols::constraint_movers::ResidueTypeConstraintMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::constraint_movers::ResidueTypeConstraintMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator) → str

C++: protocols::constraint_movers::ResidueTypeConstraintMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.constraint_movers.ResidueTypeConstraintMoverCreator, xsd: utility::tag::XMLSchemaDefinition) → None

C++: protocols::constraint_movers::ResidueTypeConstraintMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void