options

Bindings for protocols::stepwise::options namespace

class pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions

Bases: pybind11_object

VDW_rep_screen_info(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: protocols::stepwise::options::StepWiseBasicOptions::VDW_rep_screen_info() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

assign(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, : pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions

C++: protocols::stepwise::options::StepWiseBasicOptions::operator=(const class protocols::stepwise::options::StepWiseBasicOptions &) –> class protocols::stepwise::options::StepWiseBasicOptions &

atr_rep_screen(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::atr_rep_screen() const –> bool

atr_rep_screen_for_docking(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::atr_rep_screen_for_docking() const –> bool

boltzmann_choice_post_enumerated_minimize(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::boltzmann_choice_post_enumerated_minimize() const –> bool

clone(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions

C++: protocols::stepwise::options::StepWiseBasicOptions::clone() const –> class std::shared_ptr<class protocols::stepwise::options::StepWiseBasicOptions>

cluster_rmsd(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → float

C++: protocols::stepwise::options::StepWiseBasicOptions::cluster_rmsd() const –> double

disallow_pack_polar_hydrogens(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::disallow_pack_polar_hydrogens() const –> bool

hydrate_magnesiums(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::hydrate_magnesiums() const –> bool

static list_options_read(opt: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void

lores(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::lores() const –> bool

mapfile_activated(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::mapfile_activated() const –> bool

max_tries_multiplier_for_ccd(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → int

C++: protocols::stepwise::options::StepWiseBasicOptions::max_tries_multiplier_for_ccd() const –> unsigned long

min_tolerance(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → float

C++: protocols::stepwise::options::StepWiseBasicOptions::min_tolerance() const –> double

min_type(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → str

C++: protocols::stepwise::options::StepWiseBasicOptions::min_type() const –> std::string

minimize_waters(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::minimize_waters() const –> bool

minimizer_mode(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → pyrosetta.rosetta.protocols.stepwise.modeler.MinimizerMode

C++: protocols::stepwise::options::StepWiseBasicOptions::minimizer_mode() const –> const enum protocols::stepwise::modeler::MinimizerMode &

n_cycles(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → int

C++: protocols::stepwise::options::StepWiseBasicOptions::n_cycles() const –> unsigned long

num_pose_minimize(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → int

C++: protocols::stepwise::options::StepWiseBasicOptions::num_pose_minimize() const –> unsigned long

num_random_samples(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → int

C++: protocols::stepwise::options::StepWiseBasicOptions::num_random_samples() const –> unsigned long

output_cluster_size(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::output_cluster_size() const –> bool

output_minimized_pose_list(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::output_minimized_pose_list() const –> bool

parse_my_tag(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, : pyrosetta.rosetta.utility.tag.Tag) → None

Initialize from the recursive “tag” structure.

C++: protocols::stepwise::options::StepWiseBasicOptions::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

rmsd_screen(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → float

C++: protocols::stepwise::options::StepWiseBasicOptions::rmsd_screen() const –> double

sample_pH(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::sample_pH() const –> bool

sampler_num_pose_kept(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → int

C++: protocols::stepwise::options::StepWiseBasicOptions::sampler_num_pose_kept() const –> unsigned long

sampler_silent_file(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → str

C++: protocols::stepwise::options::StepWiseBasicOptions::sampler_silent_file() const –> const std::string &

set_VDW_rep_screen_info(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_VDW_rep_screen_info(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_atr_rep_screen(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_atr_rep_screen(const bool &) –> void

set_atr_rep_screen_for_docking(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_atr_rep_screen_for_docking(const bool &) –> void

set_boltzmann_choice_post_enumerated_minimize(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_boltzmann_choice_post_enumerated_minimize(const bool) –> void

set_cluster_rmsd(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: float) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_cluster_rmsd(const double &) –> void

set_disallow_pack_polar_hydrogens(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_disallow_pack_polar_hydrogens(const bool &) –> void

set_hydrate_magnesiums(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_hydrate_magnesiums(const bool &) –> void

set_lores(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_lores(const bool &) –> void

set_mapfile_activated(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_mapfile_activated(const bool &) –> void

set_max_tries_multiplier_for_ccd(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: int) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_max_tries_multiplier_for_ccd(const unsigned long &) –> void

set_min_tolerance(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: float) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_min_tolerance(const double &) –> void

set_min_type(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: str) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_min_type(const std::string &) –> void

set_minimize_waters(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_minimize_waters(const bool &) –> void

set_minimizer_mode(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: pyrosetta.rosetta.protocols.stepwise.modeler.MinimizerMode) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_minimizer_mode(const enum protocols::stepwise::modeler::MinimizerMode &) –> void

set_n_cycles(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: int) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_n_cycles(const unsigned long) –> void

set_num_pose_minimize(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: int) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_num_pose_minimize(const unsigned long &) –> void

set_num_random_samples(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: int) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_num_random_samples(const unsigned long &) –> void

set_output_cluster_size(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_output_cluster_size(const bool &) –> void

set_output_minimized_pose_list(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_output_minimized_pose_list(const bool &) –> void

set_rmsd_screen(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: float) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_rmsd_screen(const double &) –> void

set_sample_pH(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_sample_pH(const bool) –> void

set_sampler_num_pose_kept(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: int) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_sampler_num_pose_kept(const unsigned long &) –> void

set_sampler_silent_file(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: str) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_sampler_silent_file(const std::string &) –> void

set_silent_file(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: str) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_silent_file(const std::string &) –> void

set_test_all_mg_hydration_frames(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_test_all_mg_hydration_frames(const bool &) –> void

set_thermal_sampler_output_min_pose(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_thermal_sampler_output_min_pose(const bool) –> void

set_use_packer_instead_of_rotamer_trials(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_use_packer_instead_of_rotamer_trials(const bool &) –> void

set_vary_polar_hydrogen_geometry(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_vary_polar_hydrogen_geometry(const bool &) –> void

set_vary_rna_bond_geometry(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_vary_rna_bond_geometry(const bool &) –> void

set_verbose_sampler(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions, setting: bool) → None

C++: protocols::stepwise::options::StepWiseBasicOptions::set_verbose_sampler(const bool &) –> void

silent_file(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → str

C++: protocols::stepwise::options::StepWiseBasicOptions::silent_file() const –> const std::string &

test_all_mg_hydration_frames(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::test_all_mg_hydration_frames() const –> bool

thermal_sampler_output_min_pose(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::thermal_sampler_output_min_pose() const –> bool

thermal_sampler_temperature(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → float

C++: protocols::stepwise::options::StepWiseBasicOptions::thermal_sampler_temperature() const –> double

type(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → str

The class name (its type) for a particular ResourceOptions instance.

This function allows for better error message delivery.

C++: protocols::stepwise::options::StepWiseBasicOptions::type() const –> std::string

use_packer_instead_of_rotamer_trials(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::use_packer_instead_of_rotamer_trials() const –> bool

vary_polar_hydrogen_geometry(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::vary_polar_hydrogen_geometry() const –> bool

vary_rna_bond_geometry(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::vary_rna_bond_geometry() const –> bool

verbose_sampler(self: pyrosetta.rosetta.protocols.stepwise.options.StepWiseBasicOptions) → bool

C++: protocols::stepwise::options::StepWiseBasicOptions::verbose_sampler() const –> bool