mover¶

options

Bindings for protocols::stepwise::monte_carlo::mover namespace

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover¶

Bases: Mover

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, pose: pyrosetta.rosetta.core.pose.Pose, res_to_add_in_full_model_numbering: int, res_to_build_off_in_full_model_numbering: int) -> None

C++: protocols::stepwise::monte_carlo::mover::AddMover::apply(class core::pose::Pose &, const unsigned long, const unsigned long) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> None

C++: protocols::stepwise::monte_carlo::mover::AddMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, pose_to_visualize: pyrosetta.rosetta.core.pose.Pose) -> None

Apply the minimizer to one pose

C++: protocols::stepwise::monte_carlo::mover::AddMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::operator=(const class protocols::stepwise::monte_carlo::mover::AddMover &) –> class protocols::stepwise::monte_carlo::mover::AddMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_designing_with_noncanonicals(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_designing_with_noncanonicals(const bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_internal_cycles(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_internal_cycles(const unsigned long) –> void

set_kT(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: float) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_kT(const double &) –> void

set_minimize_single_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_minimize_single_res(const unsigned long) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_presample_added_residue(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_presample_added_residue(const unsigned long) –> void

set_presample_by_swa(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_presample_by_swa(const unsigned long) –> void

set_sample_pH(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_sample_pH(const bool) –> void

set_sample_range_large(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: float) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_sample_range_large(const double) –> void

set_sample_range_small(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: float) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_sample_range_small(const double) –> void

set_start_added_residue_in_aform(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_start_added_residue_in_aform(const unsigned long) –> void

set_stepwise_modeler(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMover, stepwise_modeler: pyrosetta.rosetta.protocols.stepwise.modeler.StepWiseModeler) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMover::set_stepwise_modeler(class std::shared_ptr<class protocols::stepwise::modeler::StepWiseModeler>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator¶: C++: protocols::stepwise::monte_carlo::mover::AddMoverCreator::operator=(const class protocols::stepwise::monte_carlo::mover::AddMoverCreator &) –> class protocols::stepwise::monte_carlo::mover::AddMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::AddMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator) → str¶: C++: protocols::stepwise::monte_carlo::mover::AddMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddMoverCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover¶

Bases: Mover

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> None

C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, pose: pyrosetta.rosetta.core.pose.Pose, move_type_string: str) -> bool

C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(class core::pose::Pose &, std::string &) –> bool

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, pose_to_visualize: pyrosetta.rosetta.core.pose.Pose) -> None

Apply the minimizer to one pose

C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::operator=(const class protocols::stepwise::monte_carlo::mover::AddOrDeleteMover &) –> class protocols::stepwise::monte_carlo::mover::AddOrDeleteMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_choose_random(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::set_choose_random(const bool) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_disallow_deletion_of_last_residue(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::set_disallow_deletion_of_last_residue(const bool) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_minimize_single_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::set_minimize_single_res(const bool) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::set_options(class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>) –> void

set_submotif_library(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover, setting: protocols::stepwise::monte_carlo::submotif::SubMotifLibrary) → None¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::set_submotif_library(class std::shared_ptr<const class protocols::stepwise::monte_carlo::submotif::SubMotifLibrary>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

submotif_library(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AddOrDeleteMover) → protocols::stepwise::monte_carlo::submotif::SubMotifLibrary¶: C++: protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::submotif_library() –> class std::shared_ptr<const class protocols::stepwise::monte_carlo::submotif::SubMotifLibrary>

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment¶: C++: protocols::stepwise::monte_carlo::mover::Attachment::operator=(const class protocols::stepwise::monte_carlo::mover::Attachment &) –> class protocols::stepwise::monte_carlo::mover::Attachment &

attached_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment) → int¶: C++: protocols::stepwise::monte_carlo::mover::Attachment::attached_res() const –> unsigned long

attachment_type(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType¶: C++: protocols::stepwise::monte_carlo::mover::Attachment::attachment_type() const –> enum protocols::stepwise::monte_carlo::mover::AttachmentType

set_attached_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment, setting: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::Attachment::set_attached_res(const unsigned long) –> void

set_attachment_type(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.Attachment, setting: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType) → None¶: C++: protocols::stepwise::monte_carlo::mover::Attachment::set_attachment_type(const enum protocols::stepwise::monte_carlo::mover::AttachmentType &) –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType¶

Bases: pybind11_object

Members:

NO_ATTACHMENT

BOND_TO_PREVIOUS

BOND_TO_NEXT

JUMP_TO_PREV_IN_CHAIN

JUMP_TO_NEXT_IN_CHAIN

JUMP_DOCK

SUBMOTIF

LAST_ATTACHMENT_TYPE

BOND_TO_NEXT = <AttachmentType.BOND_TO_NEXT: 2>¶

BOND_TO_PREVIOUS = <AttachmentType.BOND_TO_PREVIOUS: 1>¶

JUMP_DOCK = <AttachmentType.JUMP_DOCK: 5>¶

JUMP_TO_NEXT_IN_CHAIN = <AttachmentType.JUMP_TO_NEXT_IN_CHAIN: 4>¶

JUMP_TO_PREV_IN_CHAIN = <AttachmentType.JUMP_TO_PREV_IN_CHAIN: 3>¶

LAST_ATTACHMENT_TYPE = <AttachmentType.LAST_ATTACHMENT_TYPE: 7>¶

NO_ATTACHMENT = <AttachmentType.NO_ATTACHMENT: 0>¶

SUBMOTIF = <AttachmentType.SUBMOTIF: 6>¶

property name¶

property value¶

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover¶

Bases: Mover

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose, res_to_delete_in_full_model_numbering: int) -> None

C++: protocols::stepwise::monte_carlo::mover::DeleteMover::apply(class core::pose::Pose &, const unsigned long) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose, residues_to_delete_in_full_model_numbering: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::monte_carlo::mover::DeleteMover::apply(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose_to_visualize: pyrosetta.rosetta.core.pose.Pose) -> None

Apply the minimizer to one pose

C++: protocols::stepwise::monte_carlo::mover::DeleteMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::operator=(const class protocols::stepwise::monte_carlo::mover::DeleteMover &) –> class protocols::stepwise::monte_carlo::mover::DeleteMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

decide_to_keep_pose(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::decide_to_keep_pose(const class core::pose::Pose &) const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

minimize_after_delete(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::minimize_after_delete(class core::pose::Pose &) const –> void

static mover_name() → str¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

remove_singletons_and_update_pose_focus(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose, sliced_out_pose_op: pyrosetta.rosetta.core.pose.Pose, keep_remainder_pose: bool, keep_sliced_out_pose: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::remove_singletons_and_update_pose_focus(class core::pose::Pose &, class std::shared_ptr<class core::pose::Pose>, bool &, bool &) const –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_minimize_after_delete(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::set_minimize_after_delete(const bool) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::set_options(class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>) –> void

set_stepwise_modeler(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, stepwise_modeler: pyrosetta.rosetta.protocols.stepwise.modeler.StepWiseModeler) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::set_stepwise_modeler(class std::shared_ptr<class protocols::stepwise::modeler::StepWiseModeler>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

wipe_out_moving_residues(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMover::wipe_out_moving_residues(class core::pose::Pose &) –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMoverCreator::operator=(const class protocols::stepwise::monte_carlo::mover::DeleteMoverCreator &) –> class protocols::stepwise::monte_carlo::mover::DeleteMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator) → str¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.DeleteMoverCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::DeleteMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover¶

Bases: Mover

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover, pose: pyrosetta.rosetta.core.pose.Pose, residues_to_instantiate_in_full_model_numbering: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::apply(class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) const –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover, pose_to_visualize: pyrosetta.rosetta.core.pose.Pose) -> None

Apply the minimizer to one pose

C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::operator=(const class protocols::stepwise::monte_carlo::mover::FromScratchMover &) –> class protocols::stepwise::monte_carlo::mover::FromScratchMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_stepwise_modeler(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMover, stepwise_modeler: pyrosetta.rosetta.protocols.stepwise.modeler.StepWiseModeler) → None¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMover::set_stepwise_modeler(class std::shared_ptr<class protocols::stepwise::modeler::StepWiseModeler>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator::operator=(const class protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator &) –> class protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator) → str¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.FromScratchMoverCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::FromScratchMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.MoveType¶

Bases: pybind11_object

Members:

NO_MOVE

ADD

DELETE

FROM_SCRATCH

RESAMPLE

RESAMPLE_INTERNAL_LOCAL

ADD_SUBMOTIF

ADD_LOOP_RES

DELETE_LOOP_RES

LAST_ADD_OR_DELETE_CHOICE

ADD = <MoveType.ADD: 1>¶

ADD_LOOP_RES = <MoveType.ADD_LOOP_RES: 7>¶

ADD_SUBMOTIF = <MoveType.ADD_SUBMOTIF: 6>¶

DELETE = <MoveType.DELETE: 2>¶

DELETE_LOOP_RES = <MoveType.DELETE_LOOP_RES: 8>¶

FROM_SCRATCH = <MoveType.FROM_SCRATCH: 3>¶

LAST_ADD_OR_DELETE_CHOICE = <MoveType.LAST_ADD_OR_DELETE_CHOICE: 9>¶

NO_MOVE = <MoveType.NO_MOVE: 0>¶

RESAMPLE = <MoveType.RESAMPLE: 4>¶

RESAMPLE_INTERNAL_LOCAL = <MoveType.RESAMPLE_INTERNAL_LOCAL: 5>¶

property name¶

property value¶

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover¶

Bases: Mover

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, pose_to_visualize: pyrosetta.rosetta.core.pose.Pose) -> None

Apply the minimizer to one pose

C++: protocols::stepwise::monte_carlo::mover::ResampleMover::apply(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, pose: pyrosetta.rosetta.core.pose.Pose, move_type: str) -> bool

C++: protocols::stepwise::monte_carlo::mover::ResampleMover::apply(class core::pose::Pose &, std::string &) –> bool

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> bool

C++: protocols::stepwise::monte_carlo::mover::ResampleMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> bool

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, move_type: str) -> bool

C++: protocols::stepwise::monte_carlo::mover::ResampleMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, std::string &) –> bool

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::operator=(const class protocols::stepwise::monte_carlo::mover::ResampleMover &) –> class protocols::stepwise::monte_carlo::mover::ResampleMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_remodel_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose: pyrosetta.rosetta.core.pose.Pose) → int¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::get_remodel_res(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, const class core::pose::Pose &) const –> unsigned long

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

minimize_single_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover) → bool¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::minimize_single_res() const –> bool

static mover_name() → str¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_minimize_single_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::set_minimize_single_res(const bool &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::set_options(class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>) –> void

set_stepwise_modeler(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, stepwise_modeler: pyrosetta.rosetta.protocols.stepwise.modeler.StepWiseModeler) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::set_stepwise_modeler(class std::shared_ptr<class protocols::stepwise::modeler::StepWiseModeler>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

slide_jump_randomly(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMover, pose: pyrosetta.rosetta.core.pose.Pose, remodel_res: int) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMover::slide_jump_randomly(class core::pose::Pose &, unsigned long &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMoverCreator::operator=(const class protocols::stepwise::monte_carlo::mover::ResampleMoverCreator &) –> class protocols::stepwise::monte_carlo::mover::ResampleMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator) → str¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.ResampleMoverCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::stepwise::monte_carlo::mover::ResampleMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover¶

Bases: Mover

Central mover of stepwise Monte Carlo protocols, handing work off to special move types.

It’s worth noting that one function that for historical reasons is a method of this class is capable of spawning threads. Notably, that method is not called by this Mover’s apply function (rather, it calls this Mover’s apply function!) and so you don’t have to worry. If you are studying this class as an archetypical example of a Mover, for one thing, don’t do that because it isn’t; for another thing, don’t multithread your apply function as a misguided inference from how this Mover has a multithreaded function that’s not apply.

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, : pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::apply(class core::pose::Pose &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, pose: pyrosetta.rosetta.core.pose.Pose, stepwise_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> None
apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, pose: pyrosetta.rosetta.core.pose.Pose, stepwise_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, figure_out_all_possible_moves: bool) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, const bool) –> void

apply_legacy(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, : pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::apply_legacy(class core::pose::Pose &) –> bool

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::operator=(const class protocols::stepwise::monte_carlo::mover::StepWiseMasterMover &) –> class protocols::stepwise::monte_carlo::mover::StepWiseMasterMover &

build_full_model(*args, **kwargs)¶

Overloaded function.

build_full_model(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, start_pose: pyrosetta.rosetta.core.pose.Pose, full_model_pose: pyrosetta.rosetta.core.pose.Pose) -> None
build_full_model(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, start_pose: pyrosetta.rosetta.core.pose.Pose, full_model_pose: pyrosetta.rosetta.core.pose.Pose, choose_random: bool) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::build_full_model(const class core::pose::Pose &, class core::pose::Pose &, const bool &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

do_test_move(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose: pyrosetta.rosetta.core.pose.Pose) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::do_test_move(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, class core::pose::Pose &) –> bool

do_the_move(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::do_the_move(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, class core::pose::Pose &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

initialize(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::initialize(class std::shared_ptr<const class core::scoring::ScoreFunction>, class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>) –> void

initialize_pose_if_empty(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::initialize_pose_if_empty(class core::pose::Pose &) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

move_type_string(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::move_type_string() const –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

preminimize_pose(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::preminimize_pose(class core::pose::Pose &) –> void

proposal_density_ratio(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → float¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::proposal_density_ratio() const –> const double &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

resample_full_model(*args, **kwargs)¶

Overloaded function.

resample_full_model(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, start_pose: pyrosetta.rosetta.core.pose.Pose, output_pose: pyrosetta.rosetta.core.pose.Pose, checkpointing_breadcrumbs: bool) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::resample_full_model(const class core::pose::Pose &, class core::pose::Pose &, const bool) –> void

resample_full_model(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, start_pose: pyrosetta.rosetta.core.pose.Pose, output_pose: pyrosetta.rosetta.core.pose.Pose, checkpointing_breadcrumbs: bool, residues_to_resample: pyrosetta.rosetta.utility.vector1_unsigned_long, resample_round: int, nstruct: int) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::resample_full_model(const class core::pose::Pose &, class core::pose::Pose &, const bool, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const unsigned long, const unsigned long) –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_minimize_single_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, minimize_single_res: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::set_minimize_single_res(const bool) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::set_options(class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>) –> void

set_scorefxn(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::set_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_submotif_library(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover, setting: protocols::stepwise::monte_carlo::submotif::SubMotifLibrary) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::set_submotif_library(class std::shared_ptr<const class protocols::stepwise::monte_carlo::submotif::SubMotifLibrary>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

stepwise_move_selector(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::stepwise_move_selector() const –> class std::shared_ptr<const class protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector>

success(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMasterMover) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::success() const –> bool

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::operator=(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> class protocols::stepwise::monte_carlo::mover::StepWiseMove &

attached_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → int¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::attached_res() const –> unsigned long

attachment_type(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::attachment_type() const –> enum protocols::stepwise::monte_carlo::mover::AttachmentType

attachments(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_Attachment¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::attachments() const –> class utility::vector1<class protocols::stepwise::monte_carlo::mover::Attachment, class std::allocator<class protocols::stepwise::monte_carlo::mover::Attachment> >

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::clone() const –> class std::shared_ptr<class protocols::stepwise::monte_carlo::mover::StepWiseMove>

is_jump(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::is_jump() –> bool

move_element(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.utility.vector1_unsigned_long¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::move_element() const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

move_type(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.MoveType¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::move_type() const –> enum protocols::stepwise::monte_carlo::mover::MoveType

moving_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → int¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::moving_res() const –> unsigned long

set_attachments(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, setting: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_Attachment) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::set_attachments(const class utility::vector1<class protocols::stepwise::monte_carlo::mover::Attachment, class std::allocator<class protocols::stepwise::monte_carlo::mover::Attachment> > &) –> void

set_move_element(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::set_move_element(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_move_type(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, setting: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.MoveType) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::set_move_type(const enum protocols::stepwise::monte_carlo::mover::MoveType &) –> void

submotif_tag(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → str¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMove::submotif_tag() const –> const std::string &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector¶

Bases: pybind11_object

allow_delete(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::allow_delete() const –> bool

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::operator=(const class protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector &) –> class protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector &

choose_random(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::choose_random() const –> bool

clone(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::clone() const –> class std::shared_ptr<class protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector>

figure_out_all_possible_moves(*args, **kwargs)¶

Overloaded function.

figure_out_all_possible_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose) -> bool
figure_out_all_possible_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, verbose: bool) -> bool

C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::figure_out_all_possible_moves(const class core::pose::Pose &, const bool) –> bool

force_unique_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → bool¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::force_unique_moves() const –> bool

get_add_or_delete_element(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_add_or_delete_element(const class core::pose::Pose &, class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> void

get_attachments(*args, **kwargs)¶

Overloaded function.

get_attachments(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, moving_res: int) -> pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_Attachment

C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_attachments(const class core::pose::Pose &, const unsigned long &) –> class utility::vector1<class protocols::stepwise::monte_carlo::mover::Attachment, class std::allocator<class protocols::stepwise::monte_carlo::mover::Attachment> >

get_attachments(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, move_element: pyrosetta.rosetta.utility.vector1_unsigned_long) -> pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_Attachment

C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_attachments(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> class utility::vector1<class protocols::stepwise::monte_carlo::mover::Attachment, class std::allocator<class protocols::stepwise::monte_carlo::mover::Attachment> >

get_intramolecular_delete_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_intramolecular_delete_move_elements(const class core::pose::Pose &, class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &) –> void

get_resample_internal_local_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_resample_internal_local_move_elements(const class core::pose::Pose &, class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &) –> void

get_resample_internal_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_resample_internal_move_elements(const class core::pose::Pose &, class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &) –> void

get_resample_move_elements(*args, **kwargs)¶

Overloaded function.

get_resample_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove) -> None
get_resample_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove, save_moves: bool) -> None

C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_resample_move_elements(const class core::pose::Pose &, class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &, const bool) –> void

get_resample_terminal_move_elements(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose, swa_moves: pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_resample_terminal_move_elements(const class core::pose::Pose &, class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &) –> void

just_simple_cycles(*args, **kwargs)¶

Overloaded function.

just_simple_cycles(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose: pyrosetta.rosetta.core.pose.Pose) -> bool
just_simple_cycles(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose: pyrosetta.rosetta.core.pose.Pose, verbose: bool) -> bool

C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::just_simple_cycles(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, const class core::pose::Pose &, const bool) const –> bool

options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::options() const –> class std::shared_ptr<const class protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions>

output_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::output_moves() const –> void

proposal_probability(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) → float¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::proposal_probability(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) const –> double

reverse_move(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove, pose_before: pyrosetta.rosetta.core.pose.Pose, pose_after: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_move(const class protocols::stepwise::monte_carlo::mover::StepWiseMove &, const class core::pose::Pose &, const class core::pose::Pose &) const –> class protocols::stepwise::monte_carlo::mover::StepWiseMove

select_random_move(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::select_random_move(const class core::pose::Pose &) const –> class protocols::stepwise::monte_carlo::mover::StepWiseMove

set_allow_delete(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::set_allow_delete(const bool &) –> void

set_choose_random(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::set_choose_random(const bool &) –> void

set_force_unique_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::set_force_unique_moves(const bool &) –> void

set_options(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, setting: protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::set_options(class std::shared_ptr<const class protocols::stepwise::monte_carlo::mover::options::StepWiseMoveSelectorOptions>) –> void

set_submotif_library(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector, setting: protocols::stepwise::monte_carlo::submotif::SubMotifLibrary) → None¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::set_submotif_library(class std::shared_ptr<const class protocols::stepwise::monte_carlo::submotif::SubMotifLibrary>) –> void

submotif_library(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → protocols::stepwise::monte_carlo::submotif::SubMotifLibrary¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::submotif_library() –> class std::shared_ptr<const class protocols::stepwise::monte_carlo::submotif::SubMotifLibrary>

swa_moves(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMoveSelector) → pyrosetta.rosetta.utility.vector1_protocols_stepwise_monte_carlo_mover_StepWiseMove¶: C++: protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::swa_moves() const –> const class utility::vector1<class protocols::stepwise::monte_carlo::mover::StepWiseMove, class std::allocator<class protocols::stepwise::monte_carlo::mover::StepWiseMove> > &

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler¶

Bases: pybind11_object

move_jump_points_away(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler) → bool¶: C++: protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::move_jump_points_away() const –> bool

put_in_cutpoints(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::put_in_cutpoints(class core::pose::Pose &) –> void

set_minimize_res(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None¶: C++: protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_minimize_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_move_jump_points_away(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler, setting: bool) → None¶: C++: protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_move_jump_points_away(const bool &) –> void

take_out_cutpoints(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.TransientCutpointHandler, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::take_out_cutpoints(class core::pose::Pose &) –> void

class pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover¶

Bases: Mover

In stepwise design, vary desired loop lengths by updating FullModelParameters

apply(*args, **kwargs)¶

Overloaded function.

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover, pose: pyrosetta.rosetta.core.pose.Pose, swa_move: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.StepWiseMove) -> None

C++: protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(class core::pose::Pose &, const class protocols::stepwise::monte_carlo::mover::StepWiseMove &) –> void

apply(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover, pose: pyrosetta.rosetta.core.pose.Pose) -> None

C++: protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover, : pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover¶: C++: protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::operator=(const class protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover &) –> class protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.VaryLoopLengthMover) → str¶: C++: protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() → None¶

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on: each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) → bool¶

Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input: pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None
show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.attachment_type_from_string(name: str) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType¶: C++: protocols::stepwise::monte_carlo::mover::attachment_type_from_string(const std::string &) –> enum protocols::stepwise::monte_carlo::mover::AttachmentType

pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.move_type_from_string(name: str) → pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.MoveType¶: C++: protocols::stepwise::monte_carlo::mover::move_type_from_string(const std::string &) –> enum protocols::stepwise::monte_carlo::mover::MoveType

pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.setup_unified_stepwise_modeler(options: protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) → pyrosetta.rosetta.protocols.stepwise.modeler.StepWiseModeler¶: C++: protocols::stepwise::monte_carlo::mover::setup_unified_stepwise_modeler(class std::shared_ptr<const class protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions>, class std::shared_ptr<const class core::scoring::ScoreFunction>) –> class std::shared_ptr<class protocols::stepwise::modeler::StepWiseModeler>

pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.to_string(*args, **kwargs)¶

Overloaded function.

to_string(attachment_type: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.AttachmentType) -> str

C++: protocols::stepwise::monte_carlo::mover::to_string(const enum protocols::stepwise::monte_carlo::mover::AttachmentType &) –> std::string

to_string(move_type_name: pyrosetta.rosetta.protocols.stepwise.monte_carlo.mover.MoveType) -> str

C++: protocols::stepwise::monte_carlo::mover::to_string(const enum protocols::stepwise::monte_carlo::mover::MoveType &) –> std::string