etrie

Bindings for core::scoring::etable::etrie namespace

class pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric

Bases: pybind11_builtins.pybind11_object

conn_dat(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric, which_connection: int) pyrosetta.rosetta.core.scoring.etable.etrie.GenericResidueConnectionData

Indexed from 0.

C++: core::scoring::etable::etrie::CountPairDataGeneric::conn_dat(unsigned long) const –> const class core::scoring::etable::etrie::GenericResidueConnectionData &

conn_dist(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric, which_connection: int) int
For use by the 1-connection TrieCountPair functions

Indexed from 0.

C++: core::scoring::etable::etrie::CountPairDataGeneric::conn_dist(unsigned long) const –> unsigned long

n_connected_residues(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric) int

C++: core::scoring::etable::etrie::CountPairDataGeneric::n_connected_residues() const –> unsigned long

print(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric, os: pyrosetta.rosetta.std.ostream) None

C++: core::scoring::etable::etrie::CountPairDataGeneric::print(std::ostream &) const –> void

set_dist_to_connect_point(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairDataGeneric, entry: int, connpoint: int, connection_dist: int) None

“entry” is indexed from 1

C++: core::scoring::etable::etrie::CountPairDataGeneric::set_dist_to_connect_point(unsigned long, unsigned long, unsigned long) –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_1

Bases: pybind11_builtins.pybind11_object

conn_dist(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_1, : int) int

C++: core::scoring::etable::etrie::CountPairData_1_1::conn_dist(unsigned long) const –> unsigned long

print(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_1, os: pyrosetta.rosetta.std.ostream) None

C++: core::scoring::etable::etrie::CountPairData_1_1::print(std::ostream &) const –> void

set_dist_to_connect_point(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_1, entry: int, connpoint: int, connection_dist: int) None

C++: core::scoring::etable::etrie::CountPairData_1_1::set_dist_to_connect_point(unsigned long, unsigned long, unsigned long) –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_2

Bases: pybind11_builtins.pybind11_object

conn_dist(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_2, which_connection: int) int

C++: core::scoring::etable::etrie::CountPairData_1_2::conn_dist(unsigned long) const –> unsigned long

print(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_2, os: pyrosetta.rosetta.std.ostream) None

C++: core::scoring::etable::etrie::CountPairData_1_2::print(std::ostream &) const –> void

set_dist_to_connect_point(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_2, entry: int, connpoint: int, connection_dist: int) None

C++: core::scoring::etable::etrie::CountPairData_1_2::set_dist_to_connect_point(unsigned long, unsigned long, unsigned long) –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_3

Bases: pybind11_builtins.pybind11_object

conn_dist(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_3, which_connection: int) int

C++: core::scoring::etable::etrie::CountPairData_1_3::conn_dist(unsigned long) const –> unsigned long

print(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_3, os: pyrosetta.rosetta.std.ostream) None

C++: core::scoring::etable::etrie::CountPairData_1_3::print(std::ostream &) const –> void

set_dist_to_connect_point(self: pyrosetta.rosetta.core.scoring.etable.etrie.CountPairData_1_3, entry: int, connpoint: int, connection_dist: int) None

C++: core::scoring::etable::etrie::CountPairData_1_3::set_dist_to_connect_point(unsigned long, unsigned long, unsigned long) –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom

Bases: pyrosetta.rosetta.core.conformation.Atom

assign(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom, : pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom) pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom

C++: core::scoring::etable::etrie::EtableAtom::operator=(const class core::scoring::etable::etrie::EtableAtom &) –> class core::scoring::etable::etrie::EtableAtom &

atom_type(*args, **kwargs)

Overloaded function.

  1. atom_type(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom) -> int

deprecated!

C++: core::scoring::etable::etrie::EtableAtom::atom_type() const –> int

  1. atom_type(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom, setting: int) -> None

deprecated!

C++: core::scoring::etable::etrie::EtableAtom::atom_type(int) –> void

is_hydrogen(*args, **kwargs)

Overloaded function.

  1. is_hydrogen(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom) -> bool

property required by RotamerTrie class

C++: core::scoring::etable::etrie::EtableAtom::is_hydrogen() const –> bool

  1. is_hydrogen(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom, setting: bool) -> None

setter method for data required by RotamerTrie class

C++: core::scoring::etable::etrie::EtableAtom::is_hydrogen(bool) –> void

is_wat(*args, **kwargs)

Overloaded function.

  1. is_wat(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom) -> bool

//

checks if is water atom in hydrate/SPaDES protocol

C++: core::scoring::etable::etrie::EtableAtom::is_wat() const –> bool

  1. is_wat(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom, setting: bool) -> None

checks if is water atom in hydrate/SPaDES protocol

C++: core::scoring::etable::etrie::EtableAtom::is_wat(bool) –> void

mm_type(*args, **kwargs)

Overloaded function.

  1. mm_type(self: pyrosetta.rosetta.core.conformation.Atom, mm_type_in: int) -> None

set the mm atom type number

C++: core::conformation::Atom::mm_type(const unsigned short) –> void

  1. mm_type(self: pyrosetta.rosetta.core.conformation.Atom) -> int

get the mm atom type number

C++: core::conformation::Atom::mm_type() const –> unsigned short

print(*args, **kwargs)

Overloaded function.

  1. print(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom) -> None

send a description of the atom to standard out

send a description of the atom to standard out

C++: core::scoring::etable::etrie::EtableAtom::print() const –> void

  1. print(self: pyrosetta.rosetta.core.scoring.etable.etrie.EtableAtom, os: pyrosetta.rosetta.std.ostream) -> None

send a description of the atom to an output stream

C++: core::scoring::etable::etrie::EtableAtom::print(std::ostream &) const –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.core.conformation.Atom, output: pyrosetta.rosetta.std.ostream) -> None

Generate string representation of conformation::Atom for debugging purposes.

C++: core::conformation::Atom::show(std::ostream &) const –> void

  1. show(self: pyrosetta.rosetta.core.conformation.Atom) -> None

Generate string representation of conformation::Atom to std::cout for debugging purposes.

C++: core::conformation::Atom::show() const –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.core.conformation.Atom, type_in: int) -> None

set the atom type number

C++: core::conformation::Atom::type(const unsigned short) –> void

  1. type(self: pyrosetta.rosetta.core.conformation.Atom) -> int

Returns the AtomType number

C++: core::conformation::Atom::type() const –> unsigned short

xyz(*args, **kwargs)

Overloaded function.

  1. xyz(self: pyrosetta.rosetta.core.conformation.Atom) -> pyrosetta.rosetta.numeric.xyzVector_double_t

Returns the atom coordinates as an xyzVector

C++: core::conformation::Atom::xyz() const –> const class numeric::xyzVector<double> &

  1. xyz(self: pyrosetta.rosetta.core.conformation.Atom, xyz_in: pyrosetta.rosetta.numeric.xyzVector_double_t) -> None

Sets the atom coordinates using an xyzVector

C++: core::conformation::Atom::xyz(const class numeric::xyzVector<double> &) –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.GenericResidueConnectionData

Bases: pybind11_builtins.pybind11_object

set_dist_to_connect_point(self: pyrosetta.rosetta.core.scoring.etable.etrie.GenericResidueConnectionData, connpoint: int, connection_dist: int) None

C++: core::scoring::etable::etrie::GenericResidueConnectionData::set_dist_to_connect_point(unsigned long, unsigned long) –> void

size(self: pyrosetta.rosetta.core.scoring.etable.etrie.GenericResidueConnectionData) int

C++: core::scoring::etable::etrie::GenericResidueConnectionData::size() const –> unsigned long

class pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPair1BC3

Bases: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

assign(self: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase, : pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase) pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

C++: core::scoring::trie::TrieCountPairBase::operator=(const class core::scoring::trie::TrieCountPairBase &) –> class core::scoring::trie::TrieCountPairBase &

static print() None

C++: core::scoring::etable::etrie::TrieCountPair1BC3::print() –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPair1BC4

Bases: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

assign(self: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase, : pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase) pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

C++: core::scoring::trie::TrieCountPairBase::operator=(const class core::scoring::trie::TrieCountPairBase &) –> class core::scoring::trie::TrieCountPairBase &

class pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairAll

Bases: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

assign(self: pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairAll, : pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairAll) pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairAll

C++: core::scoring::etable::etrie::TrieCountPairAll::operator=(const class core::scoring::etable::etrie::TrieCountPairAll &) –> class core::scoring::etable::etrie::TrieCountPairAll &

static print() None

C++: core::scoring::etable::etrie::TrieCountPairAll::print() –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairGeneric

Bases: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

assign(self: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase, : pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase) pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

C++: core::scoring::trie::TrieCountPairBase::operator=(const class core::scoring::trie::TrieCountPairBase &) –> class core::scoring::trie::TrieCountPairBase &

crossover(self: pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairGeneric, setting: int) None

C++: core::scoring::etable::etrie::TrieCountPairGeneric::crossover(unsigned long) –> void

hard_crossover(self: pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairGeneric, setting: bool) None

C++: core::scoring::etable::etrie::TrieCountPairGeneric::hard_crossover(bool) –> void

static print() None

C++: core::scoring::etable::etrie::TrieCountPairGeneric::print() –> void

class pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairNone

Bases: pyrosetta.rosetta.core.scoring.trie.TrieCountPairBase

assign(self: pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairNone, : pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairNone) pyrosetta.rosetta.core.scoring.etable.etrie.TrieCountPairNone

C++: core::scoring::etable::etrie::TrieCountPairNone::operator=(const class core::scoring::etable::etrie::TrieCountPairNone &) –> class core::scoring::etable::etrie::TrieCountPairNone &

static print() None

C++: core::scoring::etable::etrie::TrieCountPairNone::print() –> void