search

Bindings for protocols::indexed_structure_store::search namespace

class pyrosetta.rosetta.protocols.indexed_structure_store.search.PairQueryExecutor

Bases: pybind11_object

__init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.PairQueryExecutor, arg0: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructurePairQuery) → None

_pybind11_conduit_v1_()

execute(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.PairQueryExecutor, arg0: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase) → None

execute_structure(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.PairQueryExecutor, arg0: int, arg1: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureData) → None

property query_results

class pyrosetta.rosetta.protocols.indexed_structure_store.search.PairQuerySummaryStatistics

Bases: pybind11_object

__init__(*args, **kwargs)

_pybind11_conduit_v1_()

property fragments_considered

property fragments_expanded

property pairs_aligned

property pairs_considered

property result_count

property structures_considered

class pyrosetta.rosetta.protocols.indexed_structure_store.search.SingleQueryExecutor

Bases: pybind11_object

__init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.SingleQueryExecutor, arg0: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureSingleQuery) → None

_pybind11_conduit_v1_()

execute(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.SingleQueryExecutor, arg0: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase) → None

execute_structure(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.SingleQueryExecutor, arg0: int, arg1: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureData) → None

property query_results

class pyrosetta.rosetta.protocols.indexed_structure_store.search.SingleQuerySummaryStatistics

Bases: pybind11_object

__init__(*args, **kwargs)

_pybind11_conduit_v1_()

property fragments_considered

property result_count

property structures_considered

class pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureData

Bases: pybind11_object

__init__(*args, **kwargs)

_pybind11_conduit_v1_()

property chain_endpoints

property coordinate_buffer

get_fragment_centers_of_mass(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureData, arg0: int) → Eigen::Matrix<float, 3, -1, 0, 3, -1>

get_fragment_indicies(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureData, arg0: int) → Eigen::Array<long, -1, 1, 0, -1, 1>

property structure_offset

class pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase

Bases: pybind11_object

__init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase) → None

_pybind11_conduit_v1_()

get_structure_data(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase, arg0: int) → protocols::indexed_structure_store::search::StructureData

initialize(*args, **kwargs)

Overloaded function.

1. initialize(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase, arg0: ndarray::Array[float, ndim=3, contiguous=3], arg1: ndarray::Array[int, ndim=1, contiguous=0], arg2: ndarray::Array[int, ndim=1, contiguous=0]) -> None

2. initialize(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureDatabase, arg0: ndarray::Array[pyrosetta.rosetta.protocols.indexed_structure_store.ResidueEntry, ndim=1, contiguous=0]) -> None

class pyrosetta.rosetta.protocols.indexed_structure_store.search.StructurePairQuery

Bases: pybind11_object

__init__(*args, **kwargs)

Overloaded function.

1. __init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructurePairQuery, arg0: ndarray::Array[float, ndim=3, contiguous=3], arg1: ndarray::Array[float, ndim=3, contiguous=3], arg2: float) -> None

2. __init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructurePairQuery, arg0: ndarray::Array[float, ndim=3, contiguous=3], arg1: ndarray::Array[float, ndim=3, contiguous=3], arg2: float, arg3: int, arg4: int) -> None

_pybind11_conduit_v1_()

property c_per_entry

property n_entry_a

property n_entry_b

property q_buffer_a

property q_buffer_b

property rmsd_tolerance

class pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureSingleQuery

Bases: pybind11_object

__init__(self: pyrosetta.rosetta.protocols.indexed_structure_store.search.StructureSingleQuery, arg0: ndarray::Array[float, ndim=3, contiguous=3], arg1: float) → None

_pybind11_conduit_v1_()

property c_per_entry

property n_entry

property q_buffer

property rmsd_tolerance