data

Bindings for core::scoring::rna::data namespace

class pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, : pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::operator=(const class core::scoring::rna::data::RNA_DMS_LowResolutionPotential &) –> class core::scoring::rna::data::RNA_DMS_LowResolutionPotential &

careful_base_pair_classifier(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::careful_base_pair_classifier() const –> bool

evaluate(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose, rna_reactivity: pyrosetta.rosetta.core.pose.rna.RNA_Reactivity) float

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::evaluate(const class core::pose::Pose &, const class core::pose::rna::RNA_Reactivity &) –> double

get_rna_base_pairing_status(*args, **kwargs)

Overloaded function.

  1. get_rna_base_pairing_status(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose, wc_edge_paired: pyrosetta.rosetta.utility.vector1_bool, hoogsteen_edge_paired: pyrosetta.rosetta.utility.vector1_bool, sugar_edge_paired: pyrosetta.rosetta.utility.vector1_bool, is_bulged: pyrosetta.rosetta.utility.vector1_bool) -> None

  2. get_rna_base_pairing_status(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose, wc_edge_paired: pyrosetta.rosetta.utility.vector1_bool, hoogsteen_edge_paired: pyrosetta.rosetta.utility.vector1_bool, sugar_edge_paired: pyrosetta.rosetta.utility.vector1_bool, is_bulged: pyrosetta.rosetta.utility.vector1_bool, already_scored: bool) -> None

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::get_rna_base_pairing_status(class core::pose::Pose &, class utility::vector1<bool, class std::allocator<bool> > &, class utility::vector1<bool, class std::allocator<bool> > &, class utility::vector1<bool, class std::allocator<bool> > &, class utility::vector1<bool, class std::allocator<bool> > &, const bool) –> void

get_wc_near_o2prime(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose, i: int) bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::get_wc_near_o2prime(const class core::pose::Pose &, const unsigned long) –> bool

hoog_edge_paired(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) pyrosetta.rosetta.utility.vector1_bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::hoog_edge_paired() const –> const class utility::vector1<bool, class std::allocator<bool> > &

initialize(*args, **kwargs)

Overloaded function.

  1. initialize(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose) -> None

  2. initialize(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, pose: pyrosetta.rosetta.core.pose.Pose, rna_base_pair_computed: bool) -> None

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::initialize(class core::pose::Pose &, const bool) –> void

is_bulged(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) pyrosetta.rosetta.utility.vector1_bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::is_bulged() const –> const class utility::vector1<bool, class std::allocator<bool> > &

set_careful_base_pair_classifier(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, setting: bool) None

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::set_careful_base_pair_classifier(const bool &) –> void

sugar_edge_paired(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) pyrosetta.rosetta.utility.vector1_bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::sugar_edge_paired() const –> const class utility::vector1<bool, class std::allocator<bool> > &

update_edge_paired(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential, i: int, k: int, wc_edge_paired: pyrosetta.rosetta.utility.vector1_bool, hoogsteen_edge_paired: pyrosetta.rosetta.utility.vector1_bool, sugar_edge_paired: pyrosetta.rosetta.utility.vector1_bool) None

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::update_edge_paired(const unsigned long, const unsigned long, class utility::vector1<bool, class std::allocator<bool> > &, class utility::vector1<bool, class std::allocator<bool> > &, class utility::vector1<bool, class std::allocator<bool> > &) –> void

wc_edge_paired(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_LowResolutionPotential) pyrosetta.rosetta.utility.vector1_bool

C++: core::scoring::rna::data::RNA_DMS_LowResolutionPotential::wc_edge_paired() const –> const class utility::vector1<bool, class std::allocator<bool> > &

class pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential

Bases: pybind11_builtins.pybind11_object

DMS_values(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential) pyrosetta.rosetta.std.set_double_t

C++: core::scoring::rna::data::RNA_DMS_Potential::DMS_values() const –> const class std::set<double, struct std::less<double>, class std::allocator<double> > &

check_chbonded(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose, i: int, atom_name: str) bool

C++: core::scoring::rna::data::RNA_DMS_Potential::check_chbonded(const class core::pose::Pose &, const unsigned long &, const std::string &) const –> bool

check_hbonded(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose, i: int, atom_name: str, is_acceptor: bool) bool

C++: core::scoring::rna::data::RNA_DMS_Potential::check_hbonded(const class core::pose::Pose &, const unsigned long &, const std::string &, bool) const –> bool

evaluate(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose, rna_reactivity: pyrosetta.rosetta.core.pose.rna.RNA_Reactivity) float

C++: core::scoring::rna::data::RNA_DMS_Potential::evaluate(const class core::pose::Pose &, const class core::pose::rna::RNA_Reactivity &) –> double

get_N1_lonepair_donor_angle(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, acc_rsd: pyrosetta.rosetta.core.conformation.Residue, don_rsd: pyrosetta.rosetta.core.conformation.Residue, don_h_atm: int) float

C++: core::scoring::rna::data::RNA_DMS_Potential::get_N1_lonepair_donor_angle(const class core::conformation::Residue &, const class core::conformation::Residue &, const unsigned long) const –> double

get_binding_energy(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, i: int, probe_xyz: pyrosetta.rosetta.numeric.xyzVector_double_t, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) float

C++: core::scoring::rna::data::RNA_DMS_Potential::get_binding_energy(const unsigned long, const class numeric::xyzVector<double> &, const class core::scoring::ScoreFunction &) –> double

get_logL_values(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose, i: int) pyrosetta.rosetta.utility.vector1_double

C++: core::scoring::rna::data::RNA_DMS_Potential::get_logL_values(const class core::pose::Pose &, const unsigned long) –> class utility::vector1<double, class std::allocator<double> >

get_occupancy_densities(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, occupancy_densities: pyrosetta.rosetta.utility.vector1_double, pose: pyrosetta.rosetta.core.pose.Pose, i: int, probe_xyz: pyrosetta.rosetta.numeric.xyzVector_double_t, shells: pyrosetta.rosetta.utility.vector1_double) None

C++: core::scoring::rna::data::RNA_DMS_Potential::get_occupancy_densities(class utility::vector1<double, class std::allocator<double> > &, const class core::pose::Pose &, const unsigned long, const class numeric::xyzVector<double> &, const class utility::vector1<double, class std::allocator<double> > &) const –> void

get_occupancy_density(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose, i: int, probe_xyz: pyrosetta.rosetta.numeric.xyzVector_double_t, shells: Tuple[float, float]) float

C++: core::scoring::rna::data::RNA_DMS_Potential::get_occupancy_density(const class core::pose::Pose &, const unsigned long, const class numeric::xyzVector<double> &, const struct std::pair<double, double> &) const –> double

get_probe_scorefxn(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, soft_rep: bool, just_atr_rep: bool) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: core::scoring::rna::data::RNA_DMS_Potential::get_probe_scorefxn(const bool, const bool) const –> class std::shared_ptr<class core::scoring::ScoreFunction>

get_probe_xyz(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, rsd: pyrosetta.rosetta.core.conformation.Residue, probe_dist: float) pyrosetta.rosetta.numeric.xyzVector_double_t

C++: core::scoring::rna::data::RNA_DMS_Potential::get_probe_xyz(const class core::conformation::Residue &, const double) const –> class numeric::xyzVector<double>

initialize(self: pyrosetta.rosetta.core.scoring.rna.data.RNA_DMS_Potential, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: core::scoring::rna::data::RNA_DMS_Potential::initialize(const class core::pose::Pose &) –> void

pyrosetta.rosetta.core.scoring.rna.data.get_bool_idx(value: bool, values: pyrosetta.rosetta.utility.vector1_bool) int

C++: core::scoring::rna::data::get_bool_idx(const bool, const class utility::vector1<bool, class std::allocator<bool> > &) –> unsigned long

pyrosetta.rosetta.core.scoring.rna.data.get_idx(*args, **kwargs)

Overloaded function.

  1. get_idx(value: float, values: pyrosetta.rosetta.std.set_double_t) -> int

C++: core::scoring::rna::data::get_idx(const double, const class std::set<double, struct std::less<double>, class std::allocator<double> > &) –> unsigned long

  1. get_idx(value: float, values: pyrosetta.rosetta.utility.vector1_double) -> int

C++: core::scoring::rna::data::get_idx(const double, const class utility::vector1<double, class std::allocator<double> > &) –> unsigned long

pyrosetta.rosetta.core.scoring.rna.data.lookup_idx(value: float, values: pyrosetta.rosetta.utility.vector1_double) int

C++: core::scoring::rna::data::lookup_idx(const double, class utility::vector1<double, class std::allocator<double> > &) –> unsigned long