buns¶
Bindings for protocols::buns namespace
- class pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2¶
Bases:
Filter
filters based on an upper bound # of buried unsatisfied polar residues
- apply(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, pose: pyrosetta.rosetta.core.pose.Pose) bool ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::apply(const class core::pose::Pose &) const –> bool
- static class_name() str ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::class_name() –> std::string
- clear(self: pyrosetta.rosetta.protocols.filters.Filter) None ¶
used to clear internal variables if needed. Using fresh_instance is preferred since it’s a pure virtual
C++: protocols::filters::Filter::clear() –> void
- clone(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2) pyrosetta.rosetta.protocols.filters.Filter ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::clone() const –> class std::shared_ptr<class protocols::filters::Filter>
- compute(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, pose: pyrosetta.rosetta.core.pose.Pose) int ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::compute(const class core::pose::Pose &) const –> unsigned long
- fresh_instance(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2) pyrosetta.rosetta.protocols.filters.Filter ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::fresh_instance() const –> class std::shared_ptr<class protocols::filters::Filter>
- get_type(self: pyrosetta.rosetta.protocols.filters.Filter) str ¶
C++: protocols::filters::Filter::get_type() const –> std::string
- get_user_defined_name(self: pyrosetta.rosetta.protocols.filters.Filter) str ¶
C++: protocols::filters::Filter::get_user_defined_name() const –> std::string
- name(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2) str ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::name() const –> std::string
- parse_my_tag(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void
- provide_citation_info(self: pyrosetta.rosetta.protocols.filters.Filter, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None ¶
- Provide citations to the passed CitationCollectionList
Subclasses should add the info for themselves and any other classes they use.
The default implementation of this function does nothing. It may be overriden by filters wishing to provide citation information.
C++: protocols::filters::Filter::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void
- static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void
- report(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, out: pyrosetta.rosetta.std.ostream, pose: pyrosetta.rosetta.core.pose.Pose) None ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::report(std::ostream &, const class core::pose::Pose &) const –> void
- report_sm(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, pose: pyrosetta.rosetta.core.pose.Pose) float ¶
C++: protocols::buns::BuriedUnsatHbondFilter2::report_sm(const class core::pose::Pose &) const –> double
- score(self: pyrosetta.rosetta.protocols.filters.Filter, pose: pyrosetta.rosetta.core.pose.Pose) float ¶
C++: protocols::filters::Filter::score(class core::pose::Pose &) –> double
- set_user_defined_name(self: pyrosetta.rosetta.protocols.filters.Filter, name: str) None ¶
C++: protocols::filters::Filter::set_user_defined_name(const std::string &) –> void
- task_factory(*args, **kwargs)¶
Overloaded function.
task_factory(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2, tf: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None
C++: protocols::buns::BuriedUnsatHbondFilter2::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void
task_factory(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2) -> pyrosetta.rosetta.core.pack.task.TaskFactory
C++: protocols::buns::BuriedUnsatHbondFilter2::task_factory() const –> class std::shared_ptr<class core::pack::task::TaskFactory>
- class pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator¶
Bases:
FilterCreator
- assign(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator, : pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator) pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator ¶
C++: protocols::buns::BuriedUnsatHbondFilter2Creator::operator=(const class protocols::buns::BuriedUnsatHbondFilter2Creator &) –> class protocols::buns::BuriedUnsatHbondFilter2Creator &
- create_filter(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator) pyrosetta.rosetta.protocols.filters.Filter ¶
C++: protocols::buns::BuriedUnsatHbondFilter2Creator::create_filter() const –> class std::shared_ptr<class protocols::filters::Filter>
- keyname(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatHbondFilter2Creator) str ¶
C++: protocols::buns::BuriedUnsatHbondFilter2Creator::keyname() const –> std::string
- class pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2¶
Bases:
EnergyDependentCalculator
- assign(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, : pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2) pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2 ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::operator=(const class protocols::buns::BuriedUnsatisfiedPolarsCalculator2 &) –> class protocols::buns::BuriedUnsatisfiedPolarsCalculator2 &
- clone(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2) pyrosetta.rosetta.core.pose.metrics.PoseMetricCalculator ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::clone() const –> class std::shared_ptr<class core::pose::metrics::PoseMetricCalculator>
- get(*args, **kwargs)¶
Overloaded function.
get(self: pyrosetta.rosetta.core.pose.metrics.EnergyDependentCalculator, key: str, val: pyrosetta.rosetta.basic.MetricValueBase, this_pose: pyrosetta.rosetta.core.pose.Pose) -> None
C++: core::pose::metrics::EnergyDependentCalculator::get(const std::string &, class basic::MetricValueBase &, const class core::pose::Pose &) –> void
get(self: pyrosetta.rosetta.core.pose.metrics.EnergyDependentCalculator, key: str, this_pose: pyrosetta.rosetta.core.pose.Pose) -> str
C++: core::pose::metrics::EnergyDependentCalculator::get(const std::string &, const class core::pose::Pose &) –> std::string
- name_of_weak_bunsat_calc(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2) str ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::name_of_weak_bunsat_calc() const –> const std::string &
- notify_energy_change(self: pyrosetta.rosetta.core.pose.metrics.EnergyDependentCalculator) None ¶
C++: core::pose::metrics::EnergyDependentCalculator::notify_energy_change() –> void
- notify_structure_change(self: pyrosetta.rosetta.core.pose.metrics.PoseMetricCalculator) None ¶
C++: core::pose::metrics::PoseMetricCalculator::notify_structure_change() –> void
- set_AHD_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_AHD_cutoff(const double &) –> void
- set_dist_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_dist_cutoff(const double &) –> void
- set_generous_hbonds(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: bool) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_generous_hbonds(bool) –> void
- set_hxl_dist_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_hxl_dist_cutoff(const double &) –> void
- set_layered_sasa(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: bool) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_layered_sasa(bool) –> void
- set_metal_dist_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_metal_dist_cutoff(const double &) –> void
- set_sasa_burial_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_sasa_burial_cutoff(const double &) –> void
- set_sulph_dist_cutoff(self: pyrosetta.rosetta.protocols.buns.BuriedUnsatisfiedPolarsCalculator2, val: float) None ¶
C++: protocols::buns::BuriedUnsatisfiedPolarsCalculator2::set_sulph_dist_cutoff(const double &) –> void