multistate_design

Bindings for protocols::multistate_design namespace

class pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction

Bases: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction

assign(self: pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction

C++: protocols::multistate_design::MetricCalculatorFitnessFunction::operator=(const class protocols::multistate_design::MetricCalculatorFitnessFunction &) –> class protocols::multistate_design::MetricCalculatorFitnessFunction &

evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose) float

C++: protocols::multistate_design::MetricCalculatorFitnessFunction::evaluate(const class core::pose::Pose &) const –> double

class pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

C++: protocols::multistate_design::MultiStateAggregateFunction::operator=(const class protocols::multistate_design::MultiStateAggregateFunction &) –> class protocols::multistate_design::MultiStateAggregateFunction &

evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, single_state_fitnesses: pyrosetta.rosetta.utility.vector1_double, fitness_function: protocols::multistate_design::MultiStateFitnessFunction) float

C++: protocols::multistate_design::MultiStateAggregateFunction::evaluate(const class utility::vector1<double, class std::allocator<double> > &, class protocols::multistate_design::MultiStateFitnessFunction &) const –> double

class pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.Entity

assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, : pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity

C++: protocols::multistate_design::MultiStateEntity::operator=(const class protocols::multistate_design::MultiStateEntity &) –> class protocols::multistate_design::MultiStateEntity &

clone(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.protocols.genetic_algorithm.Entity

C++: protocols::multistate_design::MultiStateEntity::clone() const –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>

fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float

C++: protocols::genetic_algorithm::Entity::fitness() const –> double

fitness_valid(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) bool

C++: protocols::genetic_algorithm::Entity::fitness_valid() const –> bool

read_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, is: pyrosetta.rosetta.std.istream) bool

C++: protocols::multistate_design::MultiStateEntity::read_checkpoint(std::istream &) –> bool

set_entity_element(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, index: int, element: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) None

C++: protocols::genetic_algorithm::Entity::set_entity_element(unsigned long, class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>) –> void

set_fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, val: float) None

C++: protocols::genetic_algorithm::Entity::set_fitness(double) –> void

set_traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, traits: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) None

C++: protocols::genetic_algorithm::Entity::set_traits(const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void

set_traits_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, size: int) None

C++: protocols::genetic_algorithm::Entity::set_traits_size(unsigned long) –> void

show(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, os: pyrosetta.rosetta.std.ostream) None

C++: protocols::multistate_design::MultiStateEntity::show(std::ostream &) const –> void

single_state_entity_data(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.utility.vector1_protocols_multistate_design_SingleStateEntityData

C++: protocols::multistate_design::MultiStateEntity::single_state_entity_data() –> class utility::vector1<class protocols::multistate_design::SingleStateEntityData, class std::allocator<class protocols::multistate_design::SingleStateEntityData> > &

to_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) str

C++: protocols::genetic_algorithm::Entity::to_string() const –> std::string

traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

C++: protocols::genetic_algorithm::Entity::traits() const –> const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &

traits_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) str

C++: protocols::genetic_algorithm::Entity::traits_string() const –> std::string

write_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, os: pyrosetta.rosetta.std.ostream) None

C++: protocols::multistate_design::MultiStateEntity::write_checkpoint(std::ostream &) const –> void

class pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.FitnessFunction

add_metric_value_getter(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, name: str, metric_value_getter: protocols::pose_metric_calculators::MetricValueGetter) None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_metric_value_getter(const std::string &, const class protocols::pose_metric_calculators::MetricValueGetter &) –> void

add_state(*args, **kwargs)

Overloaded function.

  1. add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, state: protocols::multistate_design::SingleState) -> None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(class std::shared_ptr<class protocols::multistate_design::SingleState>) –> void

  1. add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose, is_positive: bool) -> None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(const class core::pose::Pose &, bool) –> void

aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

C++: protocols::multistate_design::MultiStateFitnessFunction::aggregate_function() const –> class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>

assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction

C++: protocols::multistate_design::MultiStateFitnessFunction::operator=(const class protocols::multistate_design::MultiStateFitnessFunction &) –> class protocols::multistate_design::MultiStateFitnessFunction &

evaluate(*args, **kwargs)

Overloaded function.

  1. evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) -> float

C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate(class protocols::genetic_algorithm::Entity &) –> double

  1. evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, single_state_num: int) -> float

C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate(class protocols::genetic_algorithm::Entity &, unsigned long) –> double

evaluate_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float

C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate_positive_states(class protocols::genetic_algorithm::Entity &) –> double

num_negative_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_negative_states() const –> unsigned long

num_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_positive_states() const –> unsigned long

num_states(*args, **kwargs)

Overloaded function.

  1. num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_states() const –> unsigned long

  1. num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg: bool) -> int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_states(bool) const –> unsigned long

scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::multistate_design::MultiStateFitnessFunction::scorefxn() const –> class std::shared_ptr<const class core::scoring::ScoreFunction>

set_aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) None

C++: protocols::multistate_design::MultiStateFitnessFunction::set_aggregate_function(class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>) –> void

set_scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::multistate_design::MultiStateFitnessFunction::set_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

class pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker

Bases: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction

add_metric_value_getter(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, name: str, metric_value_getter: protocols::pose_metric_calculators::MetricValueGetter) None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_metric_value_getter(const std::string &, const class protocols::pose_metric_calculators::MetricValueGetter &) –> void

add_state(*args, **kwargs)

Overloaded function.

  1. add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, state: protocols::multistate_design::SingleState) -> None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(class std::shared_ptr<class protocols::multistate_design::SingleState>) –> void

  1. add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose, is_positive: bool) -> None

C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(const class core::pose::Pose &, bool) –> void

aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

C++: protocols::multistate_design::MultiStateFitnessFunction::aggregate_function() const –> class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>

assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, : pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker) pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker

C++: protocols::multistate_design::MultiStatePacker::operator=(const class protocols::multistate_design::MultiStatePacker &) –> class protocols::multistate_design::MultiStatePacker &

evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, single_state_num: int) float

C++: protocols::multistate_design::MultiStatePacker::evaluate(class protocols::genetic_algorithm::Entity &, unsigned long) –> double

evaluate_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float

C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate_positive_states(class protocols::genetic_algorithm::Entity &) –> double

num_negative_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_negative_states() const –> unsigned long

num_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_positive_states() const –> unsigned long

num_states(*args, **kwargs)

Overloaded function.

  1. num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_states() const –> unsigned long

  1. num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg: bool) -> int

C++: protocols::multistate_design::MultiStateFitnessFunction::num_states(bool) const –> unsigned long

scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::multistate_design::MultiStateFitnessFunction::scorefxn() const –> class std::shared_ptr<const class core::scoring::ScoreFunction>

set_aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) None

C++: protocols::multistate_design::MultiStateFitnessFunction::set_aggregate_function(class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>) –> void

set_num_packs(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, num: int) None

C++: protocols::multistate_design::MultiStatePacker::set_num_packs(unsigned long) –> void

set_scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::multistate_design::MultiStateFitnessFunction::set_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

single_state_design(*args, **kwargs)

Overloaded function.

  1. single_state_design(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker) -> None

  2. single_state_design(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, restrict_to_canonical: bool) -> None

C++: protocols::multistate_design::MultiStatePacker::single_state_design(bool) –> void

class pyrosetta.rosetta.protocols.multistate_design.PackingState

Bases: pyrosetta.rosetta.protocols.multistate_design.SingleState

assign(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, : pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.protocols.multistate_design.PackingState

C++: protocols::multistate_design::PackingState::operator=(const class protocols::multistate_design::PackingState &) –> class protocols::multistate_design::PackingState &

best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) float

C++: protocols::multistate_design::SingleState::best_score() const –> double

create_packer_data(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) None

C++: protocols::multistate_design::PackingState::create_packer_data(class std::shared_ptr<const class core::scoring::ScoreFunction>, class std::shared_ptr<const class core::pack::task::PackerTask>) –> void

fitness_function(*args, **kwargs)

Overloaded function.

  1. fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, fitness_function: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> None

C++: protocols::multistate_design::SingleState::fitness_function(class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>) –> void

  1. fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) -> pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction

C++: protocols::multistate_design::SingleState::fitness_function() const –> class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>

ig(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.interaction_graph.InteractionGraphBase

C++: protocols::multistate_design::PackingState::ig() const –> class std::shared_ptr<const class core::pack::interaction_graph::InteractionGraphBase>

is_positive_state(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) bool

C++: protocols::multistate_design::SingleState::is_positive_state() const –> bool

nonconst_pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose

C++: protocols::multistate_design::SingleState::nonconst_pose() –> class core::pose::Pose &

pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose

C++: protocols::multistate_design::SingleState::pose() const –> const class core::pose::Pose &

ptask(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.task.PackerTask

C++: protocols::multistate_design::PackingState::ptask() const –> class std::shared_ptr<const class core::pack::task::PackerTask>

rotamersets(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.rotamer_set.RotamerSets

C++: protocols::multistate_design::PackingState::rotamersets() const –> class std::shared_ptr<const class core::pack::rotamer_set::RotamerSets>

run_packer(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, rot_to_pack: pyrosetta.rosetta.utility.vector0_int) None

C++: protocols::multistate_design::PackingState::run_packer(const class utility::vector0<int, class std::allocator<int> > &) –> void

set_best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, score: float) None

C++: protocols::multistate_design::SingleState::set_best_score(double) –> void

share_packer_data_from(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, other: pyrosetta.rosetta.protocols.multistate_design.PackingState) None

C++: protocols::multistate_design::PackingState::share_packer_data_from(class protocols::multistate_design::PackingState &) –> void

class pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction

Bases: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

anchor_offset(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction) float

C++: protocols::multistate_design::PartitionAggregateFunction::anchor_offset() const –> double

assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction

C++: protocols::multistate_design::MultiStateAggregateFunction::operator=(const class protocols::multistate_design::MultiStateAggregateFunction &) –> class protocols::multistate_design::MultiStateAggregateFunction &

evaluate(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, single_state_fitnesses: pyrosetta.rosetta.utility.vector1_double, fitness_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) float

C++: protocols::multistate_design::PartitionAggregateFunction::evaluate(const class utility::vector1<double, class std::allocator<double> > &, class protocols::multistate_design::MultiStateFitnessFunction &) const –> double

set_anchor_offset(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, offset: float) None

C++: protocols::multistate_design::PartitionAggregateFunction::set_anchor_offset(double) –> void

set_temp(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, temp: float) None

C++: protocols::multistate_design::PartitionAggregateFunction::set_temp(double) –> void

temp(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction) float

C++: protocols::multistate_design::PartitionAggregateFunction::temp() const –> double

class pyrosetta.rosetta.protocols.multistate_design.PosType

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

assign(*args, **kwargs)

Overloaded function.

  1. assign(self: pyrosetta.rosetta.protocols.multistate_design.PosType, : pyrosetta.rosetta.protocols.multistate_design.PosType) -> pyrosetta.rosetta.protocols.multistate_design.PosType

C++: protocols::multistate_design::PosType::operator=(const class protocols::multistate_design::PosType &) –> class protocols::multistate_design::PosType &

  1. assign(self: pyrosetta.rosetta.protocols.multistate_design.PosType, rhs: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::multistate_design::PosType::operator=(const class protocols::genetic_algorithm::EntityElement &) –> class protocols::genetic_algorithm::EntityElement &

clone(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::multistate_design::PosType::clone() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

fresh_instance(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::multistate_design::PosType::fresh_instance() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

hash(self: pyrosetta.rosetta.protocols.multistate_design.PosType) int

C++: protocols::multistate_design::PosType::hash() const –> unsigned long

index(*args, **kwargs)

Overloaded function.

  1. index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> int

C++: protocols::genetic_algorithm::EntityElement::index() const –> unsigned long

  1. index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, index: int) -> None

C++: protocols::genetic_algorithm::EntityElement::index(unsigned long) –> void

name(self: pyrosetta.rosetta.protocols.multistate_design.PosType) str

C++: protocols::multistate_design::PosType::name() const –> std::string

to_string(self: pyrosetta.rosetta.protocols.multistate_design.PosType) str

C++: protocols::multistate_design::PosType::to_string() const –> std::string

type(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.core.chemical.AA

C++: protocols::multistate_design::PosType::type() const –> enum core::chemical::AA

class pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator

Bases: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElementCreator

assign(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator, : pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator) pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator

C++: protocols::multistate_design::PosTypeCreator::operator=(const class protocols::multistate_design::PosTypeCreator &) –> class protocols::multistate_design::PosTypeCreator &

new_entity(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator, word: str) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement

C++: protocols::multistate_design::PosTypeCreator::new_entity(const std::string &) –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>

widget_name(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator) str

C++: protocols::multistate_design::PosTypeCreator::widget_name() const –> std::string

class pyrosetta.rosetta.protocols.multistate_design.SingleState

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, : pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.protocols.multistate_design.SingleState

C++: protocols::multistate_design::SingleState::operator=(const class protocols::multistate_design::SingleState &) –> class protocols::multistate_design::SingleState &

best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) float

C++: protocols::multistate_design::SingleState::best_score() const –> double

fitness_function(*args, **kwargs)

Overloaded function.

  1. fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, fitness_function: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> None

C++: protocols::multistate_design::SingleState::fitness_function(class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>) –> void

  1. fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) -> pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction

C++: protocols::multistate_design::SingleState::fitness_function() const –> class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>

is_positive_state(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) bool

C++: protocols::multistate_design::SingleState::is_positive_state() const –> bool

nonconst_pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose

C++: protocols::multistate_design::SingleState::nonconst_pose() –> class core::pose::Pose &

pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose

C++: protocols::multistate_design::SingleState::pose() const –> const class core::pose::Pose &

set_best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, score: float) None

C++: protocols::multistate_design::SingleState::set_best_score(double) –> void

class pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, : pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData

C++: protocols::multistate_design::SingleStateEntityData::operator=(const class protocols::multistate_design::SingleStateEntityData &) –> class protocols::multistate_design::SingleStateEntityData &

fitness(*args, **kwargs)

Overloaded function.

  1. fitness(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) -> float

C++: protocols::multistate_design::SingleStateEntityData::fitness() const –> double

  1. fitness(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, fitness: float) -> None

C++: protocols::multistate_design::SingleStateEntityData::fitness(double) –> void

metric_value(*args, **kwargs)

Overloaded function.

  1. metric_value(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, name: str) -> pyrosetta.rosetta.basic.MetricValueBase

C++: protocols::multistate_design::SingleStateEntityData::metric_value(const std::string &) const –> class std::shared_ptr<const class basic::MetricValueBase>

  1. metric_value(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, name: str, metric_value: pyrosetta.rosetta.basic.MetricValueBase) -> None

C++: protocols::multistate_design::SingleStateEntityData::metric_value(const std::string &, class std::shared_ptr<class basic::MetricValueBase>) –> void

metric_value_map(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) pyrosetta.rosetta.std.map_std_string_std_shared_ptr_basic_MetricValueBase_t

C++: protocols::multistate_design::SingleStateEntityData::metric_value_map() const –> const class std::map<std::string, class std::shared_ptr<class basic::MetricValueBase>, struct std::less<std::string >, class std::allocator<struct std::pair<const std::string, class std::shared_ptr<class basic::MetricValueBase> > > > &

read_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, is: pyrosetta.rosetta.std.istream) bool

C++: protocols::multistate_design::SingleStateEntityData::read_checkpoint(std::istream &) –> bool

write_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, os: pyrosetta.rosetta.std.ostream) None

C++: protocols::multistate_design::SingleStateEntityData::write_checkpoint(std::ostream &) const –> void

class pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction

C++: protocols::multistate_design::SingleStateFitnessFunction::operator=(const class protocols::multistate_design::SingleStateFitnessFunction &) –> class protocols::multistate_design::SingleStateFitnessFunction &

evaluate(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose) float

C++: protocols::multistate_design::SingleStateFitnessFunction::evaluate(const class core::pose::Pose &) const –> double

pyrosetta.rosetta.protocols.multistate_design.entity_elements_from_1letterstring(input: str) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

Creates a set of PosType entity-elements from a string of 1-letter AA codes

C++: protocols::multistate_design::entity_elements_from_1letterstring(const std::string &) –> class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > >

pyrosetta.rosetta.protocols.multistate_design.limit_rotamer_set(rot_to_pack: pyrosetta.rosetta.utility.vector0_int, state: protocols::multistate_design::PackingState, seq: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) None

C++: protocols::multistate_design::limit_rotamer_set(class utility::vector0<int, class std::allocator<int> > &, const class protocols::multistate_design::PackingState &, const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void

pyrosetta.rosetta.protocols.multistate_design.list_amino_acid_options(residue_index: int, rtask: pyrosetta.rosetta.core.pack.task.ResidueLevelTask) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t

C++: protocols::multistate_design::list_amino_acid_options(unsigned long, const class core::pack::task::ResidueLevelTask &) –> class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > >

pyrosetta.rosetta.protocols.multistate_design.restrict_to_canonical_aas(state: protocols::multistate_design::PackingState, rot_to_pack: pyrosetta.rosetta.utility.vector0_int) None

C++: protocols::multistate_design::restrict_to_canonical_aas(const class protocols::multistate_design::PackingState &, class utility::vector0<int, class std::allocator<int> > &) –> void