multistate_design¶
Bindings for protocols::multistate_design namespace
- class pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction¶
Bases:
SingleStateFitnessFunction
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction ¶
C++: protocols::multistate_design::MetricCalculatorFitnessFunction::operator=(const class protocols::multistate_design::MetricCalculatorFitnessFunction &) –> class protocols::multistate_design::MetricCalculatorFitnessFunction &
- evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MetricCalculatorFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose) float ¶
C++: protocols::multistate_design::MetricCalculatorFitnessFunction::evaluate(const class core::pose::Pose &) const –> double
- class pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction ¶
C++: protocols::multistate_design::MultiStateAggregateFunction::operator=(const class protocols::multistate_design::MultiStateAggregateFunction &) –> class protocols::multistate_design::MultiStateAggregateFunction &
- evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, single_state_fitnesses: pyrosetta.rosetta.utility.vector1_double, fitness_function: protocols::multistate_design::MultiStateFitnessFunction) float ¶
C++: protocols::multistate_design::MultiStateAggregateFunction::evaluate(const class utility::vector1<double, class std::allocator<double> > &, class protocols::multistate_design::MultiStateFitnessFunction &) const –> double
- class pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity¶
Bases:
Entity
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, : pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity ¶
C++: protocols::multistate_design::MultiStateEntity::operator=(const class protocols::multistate_design::MultiStateEntity &) –> class protocols::multistate_design::MultiStateEntity &
- clone(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.protocols.genetic_algorithm.Entity ¶
C++: protocols::multistate_design::MultiStateEntity::clone() const –> class std::shared_ptr<class protocols::genetic_algorithm::Entity>
- fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float ¶
C++: protocols::genetic_algorithm::Entity::fitness() const –> double
- fitness_valid(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) bool ¶
C++: protocols::genetic_algorithm::Entity::fitness_valid() const –> bool
- read_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, is: pyrosetta.rosetta.std.istream) bool ¶
C++: protocols::multistate_design::MultiStateEntity::read_checkpoint(std::istream &) –> bool
- set_entity_element(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, index: int, element: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) None ¶
C++: protocols::genetic_algorithm::Entity::set_entity_element(unsigned long, class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>) –> void
- set_fitness(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, val: float) None ¶
C++: protocols::genetic_algorithm::Entity::set_fitness(double) –> void
- set_traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, traits: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) None ¶
C++: protocols::genetic_algorithm::Entity::set_traits(const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void
- set_traits_size(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, size: int) None ¶
C++: protocols::genetic_algorithm::Entity::set_traits_size(unsigned long) –> void
- show(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, os: pyrosetta.rosetta.std.ostream) None ¶
C++: protocols::multistate_design::MultiStateEntity::show(std::ostream &) const –> void
- single_state_entity_data(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity) pyrosetta.rosetta.utility.vector1_protocols_multistate_design_SingleStateEntityData ¶
C++: protocols::multistate_design::MultiStateEntity::single_state_entity_data() –> class utility::vector1<class protocols::multistate_design::SingleStateEntityData, class std::allocator<class protocols::multistate_design::SingleStateEntityData> > &
- to_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) str ¶
C++: protocols::genetic_algorithm::Entity::to_string() const –> std::string
- traits(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t ¶
C++: protocols::genetic_algorithm::Entity::traits() const –> const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &
- traits_string(self: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) str ¶
C++: protocols::genetic_algorithm::Entity::traits_string() const –> std::string
- write_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateEntity, os: pyrosetta.rosetta.std.ostream) None ¶
C++: protocols::multistate_design::MultiStateEntity::write_checkpoint(std::ostream &) const –> void
- class pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction¶
Bases:
FitnessFunction
- add_metric_value_getter(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, name: str, metric_value_getter: protocols::pose_metric_calculators::MetricValueGetter) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::add_metric_value_getter(const std::string &, const class protocols::pose_metric_calculators::MetricValueGetter &) –> void
- add_state(*args, **kwargs)¶
Overloaded function.
add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, state: protocols::multistate_design::SingleState) -> None
C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(class std::shared_ptr<class protocols::multistate_design::SingleState>) –> void
add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose, is_positive: bool) -> None
C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(const class core::pose::Pose &, bool) –> void
- aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::aggregate_function() const –> class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::operator=(const class protocols::multistate_design::MultiStateFitnessFunction &) –> class protocols::multistate_design::MultiStateFitnessFunction &
- evaluate(*args, **kwargs)¶
Overloaded function.
evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) -> float
C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate(class protocols::genetic_algorithm::Entity &) –> double
evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, single_state_num: int) -> float
C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate(class protocols::genetic_algorithm::Entity &, unsigned long) –> double
- evaluate_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate_positive_states(class protocols::genetic_algorithm::Entity &) –> double
- num_negative_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::num_negative_states() const –> unsigned long
- num_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::num_positive_states() const –> unsigned long
- num_states(*args, **kwargs)¶
Overloaded function.
num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int
C++: protocols::multistate_design::MultiStateFitnessFunction::num_states() const –> unsigned long
num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg: bool) -> int
C++: protocols::multistate_design::MultiStateFitnessFunction::num_states(bool) const –> unsigned long
- scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.core.scoring.ScoreFunction ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::scorefxn() const –> class std::shared_ptr<const class core::scoring::ScoreFunction>
- set_aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::set_aggregate_function(class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>) –> void
- set_scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf: pyrosetta.rosetta.core.scoring.ScoreFunction) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::set_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void
- class pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker¶
Bases:
MultiStateFitnessFunction
- add_metric_value_getter(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, name: str, metric_value_getter: protocols::pose_metric_calculators::MetricValueGetter) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::add_metric_value_getter(const std::string &, const class protocols::pose_metric_calculators::MetricValueGetter &) –> void
- add_state(*args, **kwargs)¶
Overloaded function.
add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, state: protocols::multistate_design::SingleState) -> None
C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(class std::shared_ptr<class protocols::multistate_design::SingleState>) –> void
add_state(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose, is_positive: bool) -> None
C++: protocols::multistate_design::MultiStateFitnessFunction::add_state(const class core::pose::Pose &, bool) –> void
- aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::aggregate_function() const –> class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, : pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker) pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker ¶
C++: protocols::multistate_design::MultiStatePacker::operator=(const class protocols::multistate_design::MultiStatePacker &) –> class protocols::multistate_design::MultiStatePacker &
- evaluate(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity, single_state_num: int) float ¶
C++: protocols::multistate_design::MultiStatePacker::evaluate(class protocols::genetic_algorithm::Entity &, unsigned long) –> double
- evaluate_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, entity: pyrosetta.rosetta.protocols.genetic_algorithm.Entity) float ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::evaluate_positive_states(class protocols::genetic_algorithm::Entity &) –> double
- num_negative_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::num_negative_states() const –> unsigned long
- num_positive_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) int ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::num_positive_states() const –> unsigned long
- num_states(*args, **kwargs)¶
Overloaded function.
num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) -> int
C++: protocols::multistate_design::MultiStateFitnessFunction::num_states() const –> unsigned long
num_states(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, pos_neg: bool) -> int
C++: protocols::multistate_design::MultiStateFitnessFunction::num_states(bool) const –> unsigned long
- scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) pyrosetta.rosetta.core.scoring.ScoreFunction ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::scorefxn() const –> class std::shared_ptr<const class core::scoring::ScoreFunction>
- set_aggregate_function(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, aggregate_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::set_aggregate_function(class std::shared_ptr<const class protocols::multistate_design::MultiStateAggregateFunction>) –> void
- set_num_packs(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, num: int) None ¶
C++: protocols::multistate_design::MultiStatePacker::set_num_packs(unsigned long) –> void
- set_scorefxn(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction, sf: pyrosetta.rosetta.core.scoring.ScoreFunction) None ¶
C++: protocols::multistate_design::MultiStateFitnessFunction::set_scorefxn(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void
- single_state_design(*args, **kwargs)¶
Overloaded function.
single_state_design(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker) -> None
single_state_design(self: pyrosetta.rosetta.protocols.multistate_design.MultiStatePacker, restrict_to_canonical: bool) -> None
C++: protocols::multistate_design::MultiStatePacker::single_state_design(bool) –> void
- class pyrosetta.rosetta.protocols.multistate_design.PackingState¶
Bases:
SingleState
- assign(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, : pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.protocols.multistate_design.PackingState ¶
C++: protocols::multistate_design::PackingState::operator=(const class protocols::multistate_design::PackingState &) –> class protocols::multistate_design::PackingState &
- best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) float ¶
C++: protocols::multistate_design::SingleState::best_score() const –> double
- create_packer_data(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction, ptask: pyrosetta.rosetta.core.pack.task.PackerTask) None ¶
C++: protocols::multistate_design::PackingState::create_packer_data(class std::shared_ptr<const class core::scoring::ScoreFunction>, class std::shared_ptr<const class core::pack::task::PackerTask>) –> void
- fitness_function(*args, **kwargs)¶
Overloaded function.
fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, fitness_function: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> None
C++: protocols::multistate_design::SingleState::fitness_function(class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>) –> void
fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) -> pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction
C++: protocols::multistate_design::SingleState::fitness_function() const –> class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>
- ig(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.interaction_graph.InteractionGraphBase ¶
C++: protocols::multistate_design::PackingState::ig() const –> class std::shared_ptr<const class core::pack::interaction_graph::InteractionGraphBase>
- is_positive_state(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) bool ¶
C++: protocols::multistate_design::SingleState::is_positive_state() const –> bool
- nonconst_pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::multistate_design::SingleState::nonconst_pose() –> class core::pose::Pose &
- pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::multistate_design::SingleState::pose() const –> const class core::pose::Pose &
- ptask(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.task.PackerTask ¶
C++: protocols::multistate_design::PackingState::ptask() const –> class std::shared_ptr<const class core::pack::task::PackerTask>
- rotamersets(self: pyrosetta.rosetta.protocols.multistate_design.PackingState) pyrosetta.rosetta.core.pack.rotamer_set.RotamerSets ¶
C++: protocols::multistate_design::PackingState::rotamersets() const –> class std::shared_ptr<const class core::pack::rotamer_set::RotamerSets>
- run_packer(self: pyrosetta.rosetta.protocols.multistate_design.PackingState, rot_to_pack: pyrosetta.rosetta.utility.vector0_int) None ¶
C++: protocols::multistate_design::PackingState::run_packer(const class utility::vector0<int, class std::allocator<int> > &) –> void
- set_best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, score: float) None ¶
C++: protocols::multistate_design::SingleState::set_best_score(double) –> void
C++: protocols::multistate_design::PackingState::share_packer_data_from(class protocols::multistate_design::PackingState &) –> void
- class pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction¶
Bases:
MultiStateAggregateFunction
- anchor_offset(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction) float ¶
C++: protocols::multistate_design::PartitionAggregateFunction::anchor_offset() const –> double
- assign(self: pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction, : pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction) pyrosetta.rosetta.protocols.multistate_design.MultiStateAggregateFunction ¶
C++: protocols::multistate_design::MultiStateAggregateFunction::operator=(const class protocols::multistate_design::MultiStateAggregateFunction &) –> class protocols::multistate_design::MultiStateAggregateFunction &
- evaluate(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, single_state_fitnesses: pyrosetta.rosetta.utility.vector1_double, fitness_function: pyrosetta.rosetta.protocols.multistate_design.MultiStateFitnessFunction) float ¶
C++: protocols::multistate_design::PartitionAggregateFunction::evaluate(const class utility::vector1<double, class std::allocator<double> > &, class protocols::multistate_design::MultiStateFitnessFunction &) const –> double
- set_anchor_offset(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, offset: float) None ¶
C++: protocols::multistate_design::PartitionAggregateFunction::set_anchor_offset(double) –> void
- set_temp(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction, temp: float) None ¶
C++: protocols::multistate_design::PartitionAggregateFunction::set_temp(double) –> void
- temp(self: pyrosetta.rosetta.protocols.multistate_design.PartitionAggregateFunction) float ¶
C++: protocols::multistate_design::PartitionAggregateFunction::temp() const –> double
- class pyrosetta.rosetta.protocols.multistate_design.PosType¶
Bases:
EntityElement
- assign(*args, **kwargs)¶
Overloaded function.
assign(self: pyrosetta.rosetta.protocols.multistate_design.PosType, : pyrosetta.rosetta.protocols.multistate_design.PosType) -> pyrosetta.rosetta.protocols.multistate_design.PosType
C++: protocols::multistate_design::PosType::operator=(const class protocols::multistate_design::PosType &) –> class protocols::multistate_design::PosType &
assign(self: pyrosetta.rosetta.protocols.multistate_design.PosType, rhs: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement
C++: protocols::multistate_design::PosType::operator=(const class protocols::genetic_algorithm::EntityElement &) –> class protocols::genetic_algorithm::EntityElement &
- clone(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement ¶
C++: protocols::multistate_design::PosType::clone() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>
- fresh_instance(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement ¶
C++: protocols::multistate_design::PosType::fresh_instance() –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>
- hash(self: pyrosetta.rosetta.protocols.multistate_design.PosType) int ¶
C++: protocols::multistate_design::PosType::hash() const –> unsigned long
- index(*args, **kwargs)¶
Overloaded function.
index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement) -> int
C++: protocols::genetic_algorithm::EntityElement::index() const –> unsigned long
index(self: pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement, index: int) -> None
C++: protocols::genetic_algorithm::EntityElement::index(unsigned long) –> void
- name(self: pyrosetta.rosetta.protocols.multistate_design.PosType) str ¶
C++: protocols::multistate_design::PosType::name() const –> std::string
- to_string(self: pyrosetta.rosetta.protocols.multistate_design.PosType) str ¶
C++: protocols::multistate_design::PosType::to_string() const –> std::string
- type(self: pyrosetta.rosetta.protocols.multistate_design.PosType) pyrosetta.rosetta.core.chemical.AA ¶
C++: protocols::multistate_design::PosType::type() const –> enum core::chemical::AA
- class pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator¶
Bases:
EntityElementCreator
- assign(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator, : pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator) pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator ¶
C++: protocols::multistate_design::PosTypeCreator::operator=(const class protocols::multistate_design::PosTypeCreator &) –> class protocols::multistate_design::PosTypeCreator &
- new_entity(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator, word: str) pyrosetta.rosetta.protocols.genetic_algorithm.EntityElement ¶
C++: protocols::multistate_design::PosTypeCreator::new_entity(const std::string &) –> class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>
- widget_name(self: pyrosetta.rosetta.protocols.multistate_design.PosTypeCreator) str ¶
C++: protocols::multistate_design::PosTypeCreator::widget_name() const –> std::string
- class pyrosetta.rosetta.protocols.multistate_design.SingleState¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, : pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.protocols.multistate_design.SingleState ¶
C++: protocols::multistate_design::SingleState::operator=(const class protocols::multistate_design::SingleState &) –> class protocols::multistate_design::SingleState &
- best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) float ¶
C++: protocols::multistate_design::SingleState::best_score() const –> double
- fitness_function(*args, **kwargs)¶
Overloaded function.
fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, fitness_function: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) -> None
C++: protocols::multistate_design::SingleState::fitness_function(class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>) –> void
fitness_function(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) -> pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction
C++: protocols::multistate_design::SingleState::fitness_function() const –> class std::shared_ptr<const class protocols::multistate_design::SingleStateFitnessFunction>
- is_positive_state(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) bool ¶
C++: protocols::multistate_design::SingleState::is_positive_state() const –> bool
- nonconst_pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::multistate_design::SingleState::nonconst_pose() –> class core::pose::Pose &
- pose(self: pyrosetta.rosetta.protocols.multistate_design.SingleState) pyrosetta.rosetta.core.pose.Pose ¶
C++: protocols::multistate_design::SingleState::pose() const –> const class core::pose::Pose &
- set_best_score(self: pyrosetta.rosetta.protocols.multistate_design.SingleState, score: float) None ¶
C++: protocols::multistate_design::SingleState::set_best_score(double) –> void
- class pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, : pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData ¶
C++: protocols::multistate_design::SingleStateEntityData::operator=(const class protocols::multistate_design::SingleStateEntityData &) –> class protocols::multistate_design::SingleStateEntityData &
- fitness(*args, **kwargs)¶
Overloaded function.
fitness(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) -> float
C++: protocols::multistate_design::SingleStateEntityData::fitness() const –> double
fitness(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, fitness: float) -> None
C++: protocols::multistate_design::SingleStateEntityData::fitness(double) –> void
- metric_value(*args, **kwargs)¶
Overloaded function.
metric_value(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, name: str) -> pyrosetta.rosetta.basic.MetricValueBase
C++: protocols::multistate_design::SingleStateEntityData::metric_value(const std::string &) const –> class std::shared_ptr<const class basic::MetricValueBase>
metric_value(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, name: str, metric_value: pyrosetta.rosetta.basic.MetricValueBase) -> None
C++: protocols::multistate_design::SingleStateEntityData::metric_value(const std::string &, class std::shared_ptr<class basic::MetricValueBase>) –> void
- metric_value_map(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData) pyrosetta.rosetta.std.map_std_string_std_shared_ptr_basic_MetricValueBase_t_std_allocator_std_pair_const_std_string_std_shared_ptr_basic_MetricValueBase_t ¶
C++: protocols::multistate_design::SingleStateEntityData::metric_value_map() const –> const class std::map<std::string, class std::shared_ptr<class basic::MetricValueBase>, struct std::less<std::string >, class std::allocator<struct std::pair<const std::string, class std::shared_ptr<class basic::MetricValueBase> > > > &
- read_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, is: pyrosetta.rosetta.std.istream) bool ¶
C++: protocols::multistate_design::SingleStateEntityData::read_checkpoint(std::istream &) –> bool
- write_checkpoint(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateEntityData, os: pyrosetta.rosetta.std.ostream) None ¶
C++: protocols::multistate_design::SingleStateEntityData::write_checkpoint(std::ostream &) const –> void
- class pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction¶
Bases:
pybind11_object
- assign(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction, : pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction) pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction ¶
C++: protocols::multistate_design::SingleStateFitnessFunction::operator=(const class protocols::multistate_design::SingleStateFitnessFunction &) –> class protocols::multistate_design::SingleStateFitnessFunction &
- evaluate(self: pyrosetta.rosetta.protocols.multistate_design.SingleStateFitnessFunction, pose: pyrosetta.rosetta.core.pose.Pose) float ¶
C++: protocols::multistate_design::SingleStateFitnessFunction::evaluate(const class core::pose::Pose &) const –> double
- pyrosetta.rosetta.protocols.multistate_design.entity_elements_from_1letterstring(input: str) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t ¶
Creates a set of PosType entity-elements from a string of 1-letter AA codes
C++: protocols::multistate_design::entity_elements_from_1letterstring(const std::string &) –> class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > >
- pyrosetta.rosetta.protocols.multistate_design.limit_rotamer_set(rot_to_pack: pyrosetta.rosetta.utility.vector0_int, state: protocols::multistate_design::PackingState, seq: pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t) None ¶
C++: protocols::multistate_design::limit_rotamer_set(class utility::vector0<int, class std::allocator<int> > &, const class protocols::multistate_design::PackingState &, const class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > > &) –> void
- pyrosetta.rosetta.protocols.multistate_design.list_amino_acid_options(residue_index: int, rtask: pyrosetta.rosetta.core.pack.task.ResidueLevelTask) pyrosetta.rosetta.utility.vector1_std_shared_ptr_protocols_genetic_algorithm_EntityElement_t ¶
C++: protocols::multistate_design::list_amino_acid_options(unsigned long, const class core::pack::task::ResidueLevelTask &) –> class utility::vector1<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement>, class std::allocator<class std::shared_ptr<class protocols::genetic_algorithm::EntityElement> > >
- pyrosetta.rosetta.protocols.multistate_design.restrict_to_canonical_aas(state: protocols::multistate_design::PackingState, rot_to_pack: pyrosetta.rosetta.utility.vector0_int) None ¶
C++: protocols::multistate_design::restrict_to_canonical_aas(const class protocols::multistate_design::PackingState &, class utility::vector0<int, class std::allocator<int> > &) –> void