annealer¶
Bindings for core::pack::annealer namespace
- class pyrosetta.rosetta.core.pack.annealer.AnnealerFactory¶
Bases:
pybind11_object- static create_annealer(pose: pyrosetta.rosetta.core.pose.Pose, task: core::pack::task::PackerTask, rot_to_pack: pyrosetta.rosetta.utility.vector0_int, bestrotamer_at_seqpos: pyrosetta.rosetta.ObjexxFCL.FArray1D_int_t, bestenergy: float, start_with_current: bool, ig: core::pack::interaction_graph::AnnealableGraphBase, rotamer_sets: core::pack::rotamer_set::FixbbRotamerSets, current_rot_index: pyrosetta.rosetta.ObjexxFCL.FArray1_int_t, calc_rot_freq: bool, rot_freq: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t) core::pack::annealer::SimAnnealerBase¶
C++: core::pack::annealer::AnnealerFactory::create_annealer(const class core::pose::Pose &, const class std::shared_ptr<const class core::pack::task::PackerTask> &, class utility::vector0<int, class std::allocator<int> > &, class ObjexxFCL::FArray1D<int> &, float &, bool, const class std::shared_ptr<class core::pack::interaction_graph::AnnealableGraphBase> &, const class std::shared_ptr<const class core::pack::rotamer_set::FixbbRotamerSets> &, class ObjexxFCL::FArray1<int> &, bool, class ObjexxFCL::FArray1D<float> &) –> class std::shared_ptr<class core::pack::annealer::SimAnnealerBase>
- class pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
Bases:
pybind11_object- assign(self: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver, : pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::AnnealerObserver::operator=(const class core::pack::annealer::AnnealerObserver &) –> class core::pack::annealer::AnnealerObserver &
- observe_mc(self: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver, resid: int, mres: int, existing_rotamer: pyrosetta.rosetta.core.conformation.Residue, candidate_rotamer: pyrosetta.rosetta.core.conformation.Residue, temperature: float, passed: bool) None¶
This will be called every time a Monte Carlo move is considered
C++: core::pack::annealer::AnnealerObserver::observe_mc(int, int, const class core::conformation::Residue &, const class core::conformation::Residue &, float, bool) –> void
- setup_for_mc(self: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver, rotamer_sets: core::pack::rotamer_set::FixbbRotamerSets) None¶
Do whatever you need to do before monte carlo starts. This will be called exactly once before observe_mc
C++: core::pack::annealer::AnnealerObserver::setup_for_mc(const class std::shared_ptr<const class core::pack::rotamer_set::FixbbRotamerSets> &) –> void
- class pyrosetta.rosetta.core.pack.annealer.DebuggingAnnealer¶
Bases:
RotamerAssigningAnnealer- annealer_file(self: pyrosetta.rosetta.core.pack.annealer.DebuggingAnnealer, fname: str) None¶
C++: core::pack::annealer::DebuggingAnnealer::annealer_file(const std::string &) –> void
- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.DebuggingAnnealer) None¶
C++: core::pack::annealer::DebuggingAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.FASTERAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.FASTERAnnealer) None¶
C++: core::pack::annealer::FASTERAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_ciBR_only(self: pyrosetta.rosetta.core.pack.annealer.FASTERAnnealer, setting: bool) None¶
C++: core::pack::annealer::FASTERAnnealer::set_ciBR_only(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_num_sa_trajectories(self: pyrosetta.rosetta.core.pack.annealer.FASTERAnnealer, setting: int) None¶
C++: core::pack::annealer::FASTERAnnealer::set_num_sa_trajectories(int) –> void
- set_sa_length_scale(self: pyrosetta.rosetta.core.pack.annealer.FASTERAnnealer, setting: float) None¶
C++: core::pack::annealer::FASTERAnnealer::set_sa_length_scale(double) –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.FixbbCoupledRotamerSimAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.FixbbCoupledRotamerSimAnnealer) None¶
sim_annealing for fixed backbone design mode
C++: core::pack::annealer::FixbbCoupledRotamerSimAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.FixbbLinkingRotamerSimAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.FixbbLinkingRotamerSimAnnealer) None¶
sim_annealing for fixed backbone design mode
C++: core::pack::annealer::FixbbLinkingRotamerSimAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.FixbbPwatSimAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_dwell_times(self: pyrosetta.rosetta.core.pack.annealer.FixbbPwatSimAnnealer) pyrosetta.rosetta.utility.vector1_core_pack_annealer_PointDwell¶
C++: core::pack::annealer::FixbbPwatSimAnnealer::get_dwell_times() –> class utility::vector1<struct core::pack::annealer::PointDwell, class std::allocator<struct core::pack::annealer::PointDwell> > &
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.FixbbPwatSimAnnealer) None¶
C++: core::pack::annealer::FixbbPwatSimAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_min_dwell(self: pyrosetta.rosetta.core.pack.annealer.FixbbPwatSimAnnealer, mindwell: float) None¶
C++: core::pack::annealer::FixbbPwatSimAnnealer::set_min_dwell(double) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.FixbbSimAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- record_annealer_trajectory(self: pyrosetta.rosetta.core.pack.annealer.FixbbSimAnnealer, setting: bool) None¶
C++: core::pack::annealer::FixbbSimAnnealer::record_annealer_trajectory(bool) –> void
- run(self: pyrosetta.rosetta.core.pack.annealer.FixbbSimAnnealer) None¶
C++: core::pack::annealer::FixbbSimAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- trajectory_file_name(self: pyrosetta.rosetta.core.pack.annealer.FixbbSimAnnealer, setting: str) None¶
C++: core::pack::annealer::FixbbSimAnnealer::trajectory_file_name(const std::string &) –> void
- class pyrosetta.rosetta.core.pack.annealer.MultiCoolAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.MultiCoolAnnealer) None¶
C++: core::pack::annealer::MultiCoolAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.PointDwell¶
Bases:
pybind11_object- property dwell¶
- property xyz¶
- class pyrosetta.rosetta.core.pack.annealer.RotSub¶
Bases:
pybind11_object- property accept¶
- property moltenresid¶
- property rotamerid¶
- class pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer¶
Bases:
SimAnnealerBase- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.SeqSymmAnnealerSetup¶
Bases:
pybind11_object- property common_res_types¶
- property corresponding_mress_for_mres¶
- class pyrosetta.rosetta.core.pack.annealer.SequenceSymmetricAnnealer¶
Bases:
RotamerAssigningAnnealer- create_corresponding_mress_for_mres(self: pyrosetta.rosetta.core.pack.annealer.SequenceSymmetricAnnealer) pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t¶
C++: core::pack::annealer::SequenceSymmetricAnnealer::create_corresponding_mress_for_mres() const –> class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > >
- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- record_annealer_trajectory(self: pyrosetta.rosetta.core.pack.annealer.SequenceSymmetricAnnealer, setting: bool) None¶
C++: core::pack::annealer::SequenceSymmetricAnnealer::record_annealer_trajectory(bool) –> void
- run(self: pyrosetta.rosetta.core.pack.annealer.SequenceSymmetricAnnealer) None¶
C++: core::pack::annealer::SequenceSymmetricAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- trajectory_file_name(self: pyrosetta.rosetta.core.pack.annealer.SequenceSymmetricAnnealer, setting: str) None¶
C++: core::pack::annealer::SequenceSymmetricAnnealer::trajectory_file_name(const std::string &) –> void
- class pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase¶
Bases:
pybind11_object- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- run(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- class pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer¶
Bases:
RotamerAssigningAnnealer- get_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) pyrosetta.rosetta.core.pack.annealer.AnnealerObserver¶
C++: core::pack::annealer::SimAnnealerBase::get_annealer_observer() –> class std::shared_ptr<class core::pack::annealer::AnnealerObserver>
- get_calc_rot_freq(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_calc_rot_freq() const –> bool
- get_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_inneriterations() const –> int
- get_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) int¶
C++: core::pack::annealer::SimAnnealerBase::get_outeriterations() const –> int
- get_start_with_current(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::get_start_with_current() const –> bool
- get_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) float¶
C++: core::pack::annealer::SimAnnealerBase::get_temperature() const –> float
- initialize_from_task(self: pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer, task: core::pack::task::PackerTask) None¶
C++: core::pack::annealer::SmartFixbbSimAnnealer::initialize_from_task(const class core::pack::task::PackerTask &) –> void
- pass_metropolis(*args, **kwargs)¶
Overloaded function.
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float) const –> bool
pass_metropolis(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, previous_energy: float, delta_energy: float) -> bool
C++: core::pack::annealer::SimAnnealerBase::pass_metropolis(float, float) const –> bool
- perform_validation_test(self: pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer) None¶
C++: core::pack::annealer::SmartFixbbSimAnnealer::perform_validation_test() const –> void
- pick_a_rotamer(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, cycle: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer(int) –> int
- pick_a_rotamer_for_node(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, node: int) int¶
C++: core::pack::annealer::RotamerAssigningAnnealer::pick_a_rotamer_for_node(int) const –> int
- quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) bool¶
C++: core::pack::annealer::SimAnnealerBase::quench() const –> bool
- record_annealer_trajectory(self: pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer, setting: bool) None¶
C++: core::pack::annealer::SmartFixbbSimAnnealer::record_annealer_trajectory(bool) –> void
- run(self: pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer) None¶
C++: core::pack::annealer::SmartFixbbSimAnnealer::run() –> void
- scale_inneriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, si: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_inneriterations(const float) –> void
- scale_outeriterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, so: float) None¶
C++: core::pack::annealer::SimAnnealerBase::scale_outeriterations(const float) –> void
- set_annealer_observer(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, obs: pyrosetta.rosetta.core.pack.annealer.AnnealerObserver) None¶
C++: core::pack::annealer::SimAnnealerBase::set_annealer_observer(class std::shared_ptr<class core::pack::annealer::AnnealerObserver>) –> void
- set_assign_state_to_all_nodes_immediately(self: pyrosetta.rosetta.core.pack.annealer.RotamerAssigningAnnealer, setting: bool) None¶
C++: core::pack::annealer::RotamerAssigningAnnealer::set_assign_state_to_all_nodes_immediately(bool) –> void
- set_disallow_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, setting: bool) None¶
C++: core::pack::annealer::SimAnnealerBase::set_disallow_quench(const bool &) –> void
- set_hightemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_hightemp(float) –> void
- set_lowtemp(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, : float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_lowtemp(float) –> void
- set_not_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_not_to_quench() –> void
- set_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, new_temperature: float) None¶
C++: core::pack::annealer::SimAnnealerBase::set_temperature(float) –> void
- set_to_quench(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) None¶
C++: core::pack::annealer::SimAnnealerBase::set_to_quench() –> void
- setup_iterations(*args, **kwargs)¶
Overloaded function.
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations() –> void
setup_iterations(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, num_of_state_changes: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_iterations(const int &) –> void
- setup_temperature(*args, **kwargs)¶
Overloaded function.
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const int &) –> void
setup_temperature(self: pyrosetta.rosetta.core.pack.annealer.SimAnnealerBase, loopenergy: pyrosetta.rosetta.ObjexxFCL.FArray1D_float_t, nn: int) -> None
C++: core::pack::annealer::SimAnnealerBase::setup_temperature(const class ObjexxFCL::FArray1D<float> &, int) –> void
- trajectory_file_name(self: pyrosetta.rosetta.core.pack.annealer.SmartFixbbSimAnnealer, setting: str) None¶
C++: core::pack::annealer::SmartFixbbSimAnnealer::trajectory_file_name(const std::string &) –> void