converters

pyrosetta.distributed.cluster.converters._parse_filter_results(obj: Any) → Union[bool, NoReturn]

Parse the input filter_results attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_decoy_ids(objs: Any) → List[int]

Normalize user-provided PyRosetta ‘decoy_ids’ to a list object containing int objects.

pyrosetta.distributed.cluster.converters._parse_empty_queue(protocol_name: str, ignore_errors: bool) → None

Return a None object when a protocol results in an error with ignore_errors=True.

pyrosetta.distributed.cluster.converters._parse_environment(obj: Any) → Union[str, NoReturn]

Parse the input environment attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_protocols(objs: Any) → Union[List[Union[Callable[[...], Any], Iterable[Any]]], NoReturn]

Parse the protocols argument parameters from the PyRosettaCluster().distribute() method.

pyrosetta.distributed.cluster.converters._parse_yield_results(yield_results: Any) → Union[bool, NoReturn]

pyrosetta.distributed.cluster.converters._parse_norm_task_options(obj: Any) → Union[bool, NoReturn]

Parse the input norm_task_options attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_pyrosetta_build(obj: Any) → Union[str, NoReturn]

Parse the PyRosetta build string.

pyrosetta.distributed.cluster.converters._parse_scratch_dir(obj: Any) → Union[str, NoReturn]

Parse the input scratch_dir attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_seeds(objs: Any) → List[str]

Normalize user-provided PyRosetta ‘seeds’ to a list object containing str objects.

pyrosetta.distributed.cluster.converters._parse_sha1(obj: Any) → Union[str, NoReturn]

Parse the input sha1 attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_system_info(obj: Any) → Union[Dict[Any, Any], NoReturn]

Parse the input system_info attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_logging_address(self) → str

pyrosetta.distributed.cluster.converters._get_decoy_id(protocols: Sized, decoy_ids: List[int]) → Optional[int]

Get the decoy number given the user-provided PyRosetta protocols.

pyrosetta.distributed.cluster.converters._get_packed_poses_output_kwargs(result: Any, input_kwargs: Dict[Any, Any], protocol_name: str) → Tuple[List[PackedPose], Dict[Any, Any]]

pyrosetta.distributed.cluster.converters._get_compressed_packed_pose_kwargs_pairs_list(packed_poses: List[PackedPose], output_kwargs: Dict[Any, Any], protocol_name: str, protocols_key: str, decoy_ids: List[int], serializer: S) → List[Tuple[bytes, bytes]]

pyrosetta.distributed.cluster.converters._parse_protocol_results(result: Any, input_kwargs: Dict[Any, Any], protocol_name: str, protocols_key: str, decoy_ids: List[int], serializer: S) → List[Tuple[bytes, bytes]]

Parse results from the user-provided PyRosetta protocol.

pyrosetta.distributed.cluster.converters._parse_target_results(objs: List[Tuple[bytes, bytes]]) → List[Tuple[bytes, bytes]]

Parse results returned from the spawned thread.

pyrosetta.distributed.cluster.converters._parse_tasks(objs: Any) → Union[List[Dict[Any, Any]], NoReturn]

Parse the input tasks attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_output_decoy_types(objs: Any) → Union[List[str], NoReturn]

Parse the input output_decoy_types attribute of PyRosettaCluster.

pyrosetta.distributed.cluster.converters._parse_output_scorefile_types(objs: Any) → Union[List[str], NoReturn]

Parse the input output_scorefile_types attribute of PyRosettaCluster.