movers

Bindings for protocols::protein_interface_design::movers namespace

class pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak

Bases: pyrosetta.rosetta.protocols.moves.Mover

a mover that sets a chainbreak in a specified position

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::AddChainBreak::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, : pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak

C++: protocols::protein_interface_design::movers::AddChainBreak::operator=(const class protocols::protein_interface_design::movers::AddChainBreak &) –> class protocols::protein_interface_design::movers::AddChainBreak &

automatic_distance_cutoff(*args, **kwargs)

Overloaded function.

  1. automatic_distance_cutoff(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> float

C++: protocols::protein_interface_design::movers::AddChainBreak::automatic_distance_cutoff() const –> double

  1. automatic_distance_cutoff(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, a: float) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::automatic_distance_cutoff(const double) –> void

change_conformation(*args, **kwargs)

Overloaded function.

  1. change_conformation(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, c: bool) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::change_conformation(const bool) –> void

  1. change_conformation(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> bool

C++: protocols::protein_interface_design::movers::AddChainBreak::change_conformation() const –> bool

change_foldtree(*args, **kwargs)

Overloaded function.

  1. change_foldtree(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, c: bool) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::change_foldtree(const bool) –> void

  1. change_foldtree(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> bool

C++: protocols::protein_interface_design::movers::AddChainBreak::change_foldtree() const –> bool

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddChainBreak::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

find_automatically(*args, **kwargs)

Overloaded function.

  1. find_automatically(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> bool

C++: protocols::protein_interface_design::movers::AddChainBreak::find_automatically() const –> bool

  1. find_automatically(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, b: bool) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::find_automatically(const bool) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddChainBreak::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) str

C++: protocols::protein_interface_design::movers::AddChainBreak::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::AddChainBreak::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::AddChainBreak::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::AddChainBreak::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

remove(*args, **kwargs)

Overloaded function.

  1. remove(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> bool

C++: protocols::protein_interface_design::movers::AddChainBreak::remove() const –> bool

  1. remove(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, r: bool) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::remove(const bool) –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

resnum(*args, **kwargs)

Overloaded function.

  1. resnum(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak, r: str) -> None

C++: protocols::protein_interface_design::movers::AddChainBreak::resnum(const std::string &) –> void

  1. resnum(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreak) -> str

C++: protocols::protein_interface_design::movers::AddChainBreak::resnum() const –> std::string

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator

C++: protocols::protein_interface_design::movers::AddChainBreakCreator::operator=(const class protocols::protein_interface_design::movers::AddChainBreakCreator &) –> class protocols::protein_interface_design::movers::AddChainBreakCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddChainBreakCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator) str

C++: protocols::protein_interface_design::movers::AddChainBreakCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddChainBreakCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::AddChainBreakCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, : pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::operator=(const class protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots &) –> class protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots &

chain(*args, **kwargs)

Overloaded function.

  1. chain(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) -> int

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::chain() const –> unsigned long

  1. chain(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, c: int) -> None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::chain(const unsigned long) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

coord_sdev(*args, **kwargs)

Overloaded function.

  1. coord_sdev(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) -> float

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::coord_sdev() const –> double

  1. coord_sdev(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, sdev: float) -> None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::coord_sdev(const double) –> void

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots) str

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_residue(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspots, residues: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots::set_residue(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator::operator=(const class protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator &) –> class protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator) str

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.AddSidechainConstraintsToHotspotsCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspotsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover

Bases: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::BackrubDDMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover

C++: protocols::protein_interface_design::movers::BackrubDDMover::operator=(const class protocols::protein_interface_design::movers::BackrubDDMover &) –> class protocols::protein_interface_design::movers::BackrubDDMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None
after fiddling with a task from outside this mover, clear it, or else, on the next iteration through

the mover the changes will be remembered

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task() –> void

clear_task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task_factory() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BackrubDDMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, des: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::design(const bool) –> void

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::design() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BackrubDDMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMover) str

C++: protocols::protein_interface_design::movers::BackrubDDMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

static get_xsd_complex_type() utility::tag::XMLSchemaComplexTypeGenerator

C++: protocols::calc_taskop_movers::DesignRepackMover::get_xsd_complex_type() –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

min_bb(*args, **kwargs)

Overloaded function.

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_bb: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_bb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb_set() const –> bool

min_rb(*args, **kwargs)

Overloaded function.

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: bool) -> None

in most cases, there would only be one rb dof making it useful to have a non-vector accessor to min_rb_. However, if the pose has multiple jumps, setting min_rb_ in this way might cause trouble in other parts of the code.

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const bool) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb() const –> const class utility::vector1<bool, class std::allocator<bool> > &

min_rb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb_set() const –> bool

min_sc(*args, **kwargs)

Overloaded function.

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_sc: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_sc_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc_set() const –> bool

static mover_name() str

C++: protocols::protein_interface_design::movers::BackrubDDMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

optimize_foldtree(*args, **kwargs)

Overloaded function.

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree() const –> bool

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, opt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree(const bool) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::calc_taskop_movers::DesignRepackMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prevent_repacking(*args, **kwargs)

Overloaded function.

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BackrubDDMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restrict_to_repacking(*args, **kwargs)

Overloaded function.

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_minimize() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_repack() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_minimize(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_repack(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

setup_packer_and_movemap(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::calc_taskop_movers::DesignRepackMover::setup_packer_and_movemap(const class core::pose::Pose &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

target_residues(*args, **kwargs)

Overloaded function.

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, setting: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

Replace the current target_residue setting with the passed residue selector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.pack.task.PackerTask

C++: protocols::calc_taskop_movers::DesignRepackMover::task() –> class std::shared_ptr<class core::pack::task::PackerTask> &

task_factory(*args, **kwargs)

Overloaded function.

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.pack.task.TaskFactory

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory() –> class std::shared_ptr<class core::pack::task::TaskFactory> &

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_preset_task(*args, **kwargs)

Overloaded function.

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, bt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task(const bool) –> void

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task() const –> bool

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator

C++: protocols::protein_interface_design::movers::BackrubDDMoverCreator::operator=(const class protocols::protein_interface_design::movers::BackrubDDMoverCreator &) –> class protocols::protein_interface_design::movers::BackrubDDMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BackrubDDMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator) str

C++: protocols::protein_interface_design::movers::BackrubDDMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BackrubDDMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BackrubDDMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

remove all HotspotCst’s from the pose except the best X

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::operator=(const class protocols::protein_interface_design::movers::BestHotspotCstMover &) –> class protocols::protein_interface_design::movers::BestHotspotCstMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover) str

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMover, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BestHotspotCstMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator

C++: protocols::protein_interface_design::movers::BestHotspotCstMoverCreator::operator=(const class protocols::protein_interface_design::movers::BestHotspotCstMoverCreator &) –> class protocols::protein_interface_design::movers::BestHotspotCstMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BestHotspotCstMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator) str

C++: protocols::protein_interface_design::movers::BestHotspotCstMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BestHotspotCstMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BestHotspotCstMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose

Bases: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover

designs alanine residues in place of the residue identities at the interface. Retains interface glycines and prolines.

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::BuildAlaPose::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose) pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose

C++: protocols::protein_interface_design::movers::BuildAlaPose::operator=(const class protocols::protein_interface_design::movers::BuildAlaPose &) –> class protocols::protein_interface_design::movers::BuildAlaPose &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None
after fiddling with a task from outside this mover, clear it, or else, on the next iteration through

the mover the changes will be remembered

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task() –> void

clear_task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task_factory() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BuildAlaPose::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, des: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::design(const bool) –> void

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::design() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BuildAlaPose::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose) str

C++: protocols::protein_interface_design::movers::BuildAlaPose::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

static get_xsd_complex_type() utility::tag::XMLSchemaComplexTypeGenerator

C++: protocols::calc_taskop_movers::DesignRepackMover::get_xsd_complex_type() –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

min_bb(*args, **kwargs)

Overloaded function.

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_bb: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_bb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb_set() const –> bool

min_rb(*args, **kwargs)

Overloaded function.

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: bool) -> None

in most cases, there would only be one rb dof making it useful to have a non-vector accessor to min_rb_. However, if the pose has multiple jumps, setting min_rb_ in this way might cause trouble in other parts of the code.

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const bool) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb() const –> const class utility::vector1<bool, class std::allocator<bool> > &

min_rb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb_set() const –> bool

min_sc(*args, **kwargs)

Overloaded function.

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_sc: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_sc_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc_set() const –> bool

static mover_name() str

C++: protocols::protein_interface_design::movers::BuildAlaPose::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

optimize_foldtree(*args, **kwargs)

Overloaded function.

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree() const –> bool

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, opt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree(const bool) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPose, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::BuildAlaPose::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prevent_repacking(*args, **kwargs)

Overloaded function.

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BuildAlaPose::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restrict_to_repacking(*args, **kwargs)

Overloaded function.

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_minimize() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_repack() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_minimize(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_repack(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

setup_packer_and_movemap(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::calc_taskop_movers::DesignRepackMover::setup_packer_and_movemap(const class core::pose::Pose &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

target_residues(*args, **kwargs)

Overloaded function.

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, setting: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

Replace the current target_residue setting with the passed residue selector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.pack.task.PackerTask

C++: protocols::calc_taskop_movers::DesignRepackMover::task() –> class std::shared_ptr<class core::pack::task::PackerTask> &

task_factory(*args, **kwargs)

Overloaded function.

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.pack.task.TaskFactory

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory() –> class std::shared_ptr<class core::pack::task::TaskFactory> &

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_preset_task(*args, **kwargs)

Overloaded function.

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, bt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task(const bool) –> void

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task() const –> bool

class pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator

C++: protocols::protein_interface_design::movers::BuildAlaPoseCreator::operator=(const class protocols::protein_interface_design::movers::BuildAlaPoseCreator &) –> class protocols::protein_interface_design::movers::BuildAlaPoseCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::BuildAlaPoseCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator) str

C++: protocols::protein_interface_design::movers::BuildAlaPoseCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.BuildAlaPoseCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::BuildAlaPoseCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack, : pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack) pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack

C++: protocols::protein_interface_design::movers::CoordinateConstraintStack::operator=(const class protocols::protein_interface_design::movers::CoordinateConstraintStack &) –> class protocols::protein_interface_design::movers::CoordinateConstraintStack &

coord_csts(*args, **kwargs)

Overloaded function.

  1. coord_csts(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack) -> pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t

C++: protocols::protein_interface_design::movers::CoordinateConstraintStack::coord_csts() const –> const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &

  1. coord_csts(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack, setting: pyrosetta.rosetta.utility.vector1_std_shared_ptr_const_core_scoring_constraints_Constraint_t) -> None

C++: protocols::protein_interface_design::movers::CoordinateConstraintStack::coord_csts(const class utility::vector1<class std::shared_ptr<const class core::scoring::constraints::Constraint>, class std::allocator<class std::shared_ptr<const class core::scoring::constraints::Constraint> > > &) –> void

parent(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack) pyrosetta.rosetta.protocols.protein_interface_design.movers.CoordinateConstraintStack

C++: protocols::protein_interface_design::movers::CoordinateConstraintStack::parent() const –> class std::shared_ptr<class protocols::protein_interface_design::movers::CoordinateConstraintStack>

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds

Bases: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover

used to design a protein to hbond preferentially to a set of target residues on the partner. Hbonds involving backbone or sidechain on the target can be counted, and whether to design donors or acceptors can also be defined.

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds) pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::operator=(const class protocols::protein_interface_design::movers::DesignMinimizeHbonds &) –> class protocols::protein_interface_design::movers::DesignMinimizeHbonds &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None
after fiddling with a task from outside this mover, clear it, or else, on the next iteration through

the mover the changes will be remembered

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task() –> void

clear_task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task_factory() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, des: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::design(const bool) –> void

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::design() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds) str

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

static get_xsd_complex_type() utility::tag::XMLSchemaComplexTypeGenerator

C++: protocols::calc_taskop_movers::DesignRepackMover::get_xsd_complex_type() –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

min_bb(*args, **kwargs)

Overloaded function.

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_bb: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_bb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb_set() const –> bool

min_rb(*args, **kwargs)

Overloaded function.

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: bool) -> None

in most cases, there would only be one rb dof making it useful to have a non-vector accessor to min_rb_. However, if the pose has multiple jumps, setting min_rb_ in this way might cause trouble in other parts of the code.

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const bool) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb() const –> const class utility::vector1<bool, class std::allocator<bool> > &

min_rb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb_set() const –> bool

min_sc(*args, **kwargs)

Overloaded function.

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_sc: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_sc_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc_set() const –> bool

static mover_name() str

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

optimize_foldtree(*args, **kwargs)

Overloaded function.

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree() const –> bool

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, opt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree(const bool) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbonds, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prevent_repacking(*args, **kwargs)

Overloaded function.

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DesignMinimizeHbonds::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restrict_to_repacking(*args, **kwargs)

Overloaded function.

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_minimize() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_repack() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_minimize(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_repack(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

setup_packer_and_movemap(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::calc_taskop_movers::DesignRepackMover::setup_packer_and_movemap(const class core::pose::Pose &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

target_residues(*args, **kwargs)

Overloaded function.

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, setting: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

Replace the current target_residue setting with the passed residue selector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.pack.task.PackerTask

C++: protocols::calc_taskop_movers::DesignRepackMover::task() –> class std::shared_ptr<class core::pack::task::PackerTask> &

task_factory(*args, **kwargs)

Overloaded function.

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.pack.task.TaskFactory

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory() –> class std::shared_ptr<class core::pack::task::TaskFactory> &

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_preset_task(*args, **kwargs)

Overloaded function.

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, bt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task(const bool) –> void

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task() const –> bool

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator

C++: protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator::operator=(const class protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator &) –> class protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator) str

C++: protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DesignMinimizeHbondsCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DesignMinimizeHbondsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover

Bases: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::DisulfideMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover

C++: protocols::protein_interface_design::movers::DisulfideMover::operator=(const class protocols::protein_interface_design::movers::DisulfideMover &) –> class protocols::protein_interface_design::movers::DisulfideMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None
after fiddling with a task from outside this mover, clear it, or else, on the next iteration through

the mover the changes will be remembered

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task() –> void

clear_task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task_factory() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DisulfideMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, des: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::design(const bool) –> void

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::design() const –> bool

static disulfide_list(pose: pyrosetta.rosetta.core.pose.Pose, targets: pyrosetta.rosetta.utility.vector1_unsigned_long, rb_jump: int, disulfides: pyrosetta.rosetta.utility.vector1_std_pair_unsigned_long_unsigned_long_t) None

Find all residues which could disulfide bond to a target

pairs of residues (target, host) from the target protein and the

docking protein.

This is implemented as a static method so that DisulfidedFilter

can share code.

C++: protocols::protein_interface_design::movers::DisulfideMover::disulfide_list(const class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long, class utility::vector1<struct std::pair<unsigned long, unsigned long>, class std::allocator<struct std::pair<unsigned long, unsigned long> > > &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DisulfideMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover) str

C++: protocols::protein_interface_design::movers::DisulfideMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

static get_xsd_complex_type() utility::tag::XMLSchemaComplexTypeGenerator

C++: protocols::calc_taskop_movers::DesignRepackMover::get_xsd_complex_type() –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

min_bb(*args, **kwargs)

Overloaded function.

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_bb: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_bb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb_set() const –> bool

min_rb(*args, **kwargs)

Overloaded function.

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: bool) -> None

in most cases, there would only be one rb dof making it useful to have a non-vector accessor to min_rb_. However, if the pose has multiple jumps, setting min_rb_ in this way might cause trouble in other parts of the code.

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const bool) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb() const –> const class utility::vector1<bool, class std::allocator<bool> > &

min_rb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb_set() const –> bool

min_sc(*args, **kwargs)

Overloaded function.

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_sc: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_sc_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc_set() const –> bool

static mover_name() str

C++: protocols::protein_interface_design::movers::DisulfideMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

optimize_foldtree(*args, **kwargs)

Overloaded function.

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree() const –> bool

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, opt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree(const bool) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMover, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::DisulfideMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prevent_repacking(*args, **kwargs)

Overloaded function.

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DisulfideMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restrict_to_repacking(*args, **kwargs)

Overloaded function.

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_minimize() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_repack() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_minimize(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::calc_taskop_movers::DesignRepackMover::set_scorefxn_repack(class std::shared_ptr<const class core::scoring::ScoreFunction>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

setup_packer_and_movemap(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::calc_taskop_movers::DesignRepackMover::setup_packer_and_movemap(const class core::pose::Pose &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

target_residues(*args, **kwargs)

Overloaded function.

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, setting: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

Replace the current target_residue setting with the passed residue selector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.select.residue_selector.ResidueSelector

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues() const –> class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>

  1. target_residues(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::target_residues(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.pack.task.PackerTask

C++: protocols::calc_taskop_movers::DesignRepackMover::task() –> class std::shared_ptr<class core::pack::task::PackerTask> &

task_factory(*args, **kwargs)

Overloaded function.

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.core.pack.task.TaskFactory) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory(class std::shared_ptr<class core::pack::task::TaskFactory>) –> void

  1. task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.core.pack.task.TaskFactory

C++: protocols::calc_taskop_movers::DesignRepackMover::task_factory() –> class std::shared_ptr<class core::pack::task::TaskFactory> &

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

use_preset_task(*args, **kwargs)

Overloaded function.

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, bt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task(const bool) –> void

  1. use_preset_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::use_preset_task() const –> bool

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator

C++: protocols::protein_interface_design::movers::DisulfideMoverCreator::operator=(const class protocols::protein_interface_design::movers::DisulfideMoverCreator &) –> class protocols::protein_interface_design::movers::DisulfideMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DisulfideMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator) str

C++: protocols::protein_interface_design::movers::DisulfideMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DisulfideMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DisulfideMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains) pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::operator=(const class protocols::protein_interface_design::movers::DockAndRetrieveSidechains &) –> class protocols::protein_interface_design::movers::DockAndRetrieveSidechains &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains) str

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechains, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechains::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator::operator=(const class protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator &) –> class protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator) str

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockAndRetrieveSidechainsCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DockAndRetrieveSidechainsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

A mover to mutate a single residue

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::operator=(const class protocols::protein_interface_design::movers::DockWithHotspotMover &) –> class protocols::protein_interface_design::movers::DockWithHotspotMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover) str

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMover, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DockWithHotspotMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator

C++: protocols::protein_interface_design::movers::DockWithHotspotMoverCreator::operator=(const class protocols::protein_interface_design::movers::DockWithHotspotMoverCreator &) –> class protocols::protein_interface_design::movers::DockWithHotspotMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::DockWithHotspotMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator) str

C++: protocols::protein_interface_design::movers::DockWithHotspotMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.DockWithHotspotMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::DockWithHotspotMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle, : pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle) pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::operator=(const class protocols::protein_interface_design::movers::FavorNativeResiduePreCycle &) –> class protocols::protein_interface_design::movers::FavorNativeResiduePreCycle &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle) str

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycle, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycle::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator::operator=(const class protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator &) –> class protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator) str

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNativeResiduePreCycleCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::FavorNativeResiduePreCycleCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle, : pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle) pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::operator=(const class protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle &) –> class protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle) str

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycle, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator::operator=(const class protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator &) –> class protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator) str

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.FavorNonNativeResiduePreCycleCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycleCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::operator=(const class protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover &) –> class protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover &

chain(*args, **kwargs)

Overloaded function.

  1. chain(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, c: int) -> None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::chain(const unsigned long) –> void

  1. chain(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) -> int

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::chain() const –> unsigned long

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

ddG_threshold(*args, **kwargs)

Overloaded function.

  1. ddG_threshold(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) -> float

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::ddG_threshold() const –> double

  1. ddG_threshold(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, : float) -> None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::ddG_threshold(const double) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) str

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_residues(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, pose: pyrosetta.rosetta.core.pose.Pose) pyrosetta.rosetta.std.set_unsigned_long_t

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::get_residues(const class core::pose::Pose &) const –> class std::set<unsigned long, struct std::less<unsigned long>, class std::allocator<unsigned long> >

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

interface_radius(*args, **kwargs)

Overloaded function.

  1. interface_radius(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, rad: float) -> None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::interface_radius(const double) –> void

  1. interface_radius(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) -> float

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::interface_radius() const –> double

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

scorefxn(*args, **kwargs)

Overloaded function.

  1. scorefxn(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::scorefxn() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

  1. scorefxn(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::scorefxn(class std::shared_ptr<class core::scoring::ScoreFunction>) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_residues(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMover, residues: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::set_residues(class std::shared_ptr<const class core::select::residue_selector::ResidueSelector>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator::operator=(const class protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator &) –> class protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator) str

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotDisjointedFoldTreeMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::HotspotHasherMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover

C++: protocols::protein_interface_design::movers::HotspotHasherMover::operator=(const class protocols::protein_interface_design::movers::HotspotHasherMover &) –> class protocols::protein_interface_design::movers::HotspotHasherMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotHasherMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotHasherMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover) str

C++: protocols::protein_interface_design::movers::HotspotHasherMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::HotspotHasherMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMover, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::HotspotHasherMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::HotspotHasherMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator

C++: protocols::protein_interface_design::movers::HotspotHasherMoverCreator::operator=(const class protocols::protein_interface_design::movers::HotspotHasherMoverCreator &) –> class protocols::protein_interface_design::movers::HotspotHasherMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::HotspotHasherMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator) str

C++: protocols::protein_interface_design::movers::HotspotHasherMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.HotspotHasherMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::HotspotHasherMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

a pure virtual base class for movers which redesign and repack the interface

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover, : pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover) pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::operator=(const class protocols::protein_interface_design::movers::InterfaceRecapitulationMover &) –> class protocols::protein_interface_design::movers::InterfaceRecapitulationMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover) str

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_reference_pose(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::get_reference_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_reference_pose(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMover, : pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMover::set_reference_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator, : pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator) pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator::operator=(const class protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator &) –> class protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator) str

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.InterfaceRecapitulationMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::InterfaceRecapitulationMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder

Bases: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover

apply(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::protein_interface_design::movers::LoopFinder::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder, : pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder) pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder

C++: protocols::protein_interface_design::movers::LoopFinder::operator=(const class protocols::protein_interface_design::movers::LoopFinder &) –> class protocols::protein_interface_design::movers::LoopFinder &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clear_task(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None
after fiddling with a task from outside this mover, clear it, or else, on the next iteration through

the mover the changes will be remembered

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task() –> void

clear_task_factory(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) None

C++: protocols::calc_taskop_movers::DesignRepackMover::clear_task_factory() –> void

clone(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::LoopFinder::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

design(*args, **kwargs)

Overloaded function.

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, des: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::design(const bool) –> void

  1. design(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::design() const –> bool

fresh_instance(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::protein_interface_design::movers::LoopFinder::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder) str

C++: protocols::protein_interface_design::movers::LoopFinder::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

static get_xsd_complex_type() utility::tag::XMLSchemaComplexTypeGenerator

C++: protocols::calc_taskop_movers::DesignRepackMover::get_xsd_complex_type() –> class std::shared_ptr<class utility::tag::XMLSchemaComplexTypeGenerator>

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

min_bb(*args, **kwargs)

Overloaded function.

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_bb: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_bb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_bb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_bb_set() const –> bool

min_rb(*args, **kwargs)

Overloaded function.

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: pyrosetta.rosetta.utility.vector1_bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const class utility::vector1<bool, class std::allocator<bool> > &) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_rb: bool) -> None

in most cases, there would only be one rb dof making it useful to have a non-vector accessor to min_rb_. However, if the pose has multiple jumps, setting min_rb_ in this way might cause trouble in other parts of the code.

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb(const bool) –> void

  1. min_rb(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb() const –> const class utility::vector1<bool, class std::allocator<bool> > &

min_rb_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_rb_set() const –> bool

min_sc(*args, **kwargs)

Overloaded function.

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, min_sc: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(class std::shared_ptr<class core::select::residue_selector::ResidueSelector>) –> void

  1. min_sc(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, pose: pyrosetta.rosetta.core.pose.Pose) -> pyrosetta.rosetta.utility.vector1_bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

min_sc_set(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) bool

C++: protocols::calc_taskop_movers::DesignRepackMover::min_sc_set() const –> bool

static mover_name() str

C++: protocols::protein_interface_design::movers::LoopFinder::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

optimize_foldtree(*args, **kwargs)

Overloaded function.

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> bool

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree() const –> bool

  1. optimize_foldtree(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, opt: bool) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::optimize_foldtree(const bool) –> void

parse_my_tag(self: pyrosetta.rosetta.protocols.protein_interface_design.movers.LoopFinder, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::protein_interface_design::movers::LoopFinder::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

prevent_repacking(*args, **kwargs)

Overloaded function.

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. prevent_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::prevent_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::protein_interface_design::movers::LoopFinder::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

restrict_to_repacking(*args, **kwargs)

Overloaded function.

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover, p: pyrosetta.rosetta.utility.vector1_unsigned_long) -> None

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

  1. restrict_to_repacking(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) -> pyrosetta.rosetta.utility.vector1_unsigned_long

C++: protocols::calc_taskop_movers::DesignRepackMover::restrict_to_repacking() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

scorefxn_minimize(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_minimize() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

scorefxn_repack(self: pyrosetta.rosetta.protocols.calc_taskop_movers.DesignRepackMover) pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::calc_taskop_movers::DesignRepackMover::scorefxn_repack() const –> class std::shared_ptr<class core::scoring::ScoreFunction>

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: