options

Bindings for core::import_pose::options namespace

class pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions

Bases: pybind11_object

assign(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, : pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions

C++: core::import_pose::options::RNA_BasicOptions::operator=(const class core::import_pose::options::RNA_BasicOptions &) –> class core::import_pose::options::RNA_BasicOptions &

clone(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions

C++: core::import_pose::options::RNA_BasicOptions::clone() const –> class std::shared_ptr<class core::import_pose::options::RNA_BasicOptions>

dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dock_into_density() const –> bool

dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dump_pdb() const –> bool

initialize_from_command_line(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → None

C++: core::import_pose::options::RNA_BasicOptions::initialize_from_command_line() –> void

initialize_from_options(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, opts: pyrosetta.rosetta.utility.options.OptionCollection) → None

C++: core::import_pose::options::RNA_BasicOptions::initialize_from_options(const class utility::options::OptionCollection &) –> void

initialize_from_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, tag: utility::tag::Tag) → None

C++: core::import_pose::options::RNA_BasicOptions::initialize_from_tag(const class std::shared_ptr<const class utility::tag::Tag> &) –> void

static list_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: core::import_pose::options::RNA_BasicOptions::list_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static list_options_read(opts: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) → None

C++: core::import_pose::options::RNA_BasicOptions::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void

model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::model_with_density() const –> bool

move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::move_first_rigid_body() const –> bool

parse_my_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, : utility::tag::Tag) → None

Initialize from the recursive “tag” structure.

C++: core::import_pose::options::RNA_BasicOptions::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dock_into_density(const bool &) –> void

set_dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dump_pdb(const bool) –> void

set_model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_model_with_density(const bool &) –> void

set_move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_move_first_rigid_body(const bool &) –> void

set_verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_verbose(const bool &) –> void

type(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → str

The class name (its type) for a particular ResourceOptions instance.

This function allows for better error message delivery.

C++: core::import_pose::options::RNA_BasicOptions::type() const –> std::string

verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::verbose() const –> bool

class pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions

Bases: RNA_FragmentMonteCarloOptions

VDW_rep_screen_info(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::VDW_rep_screen_info() const –> class utility::vector1<std::string, class std::allocator<std::string > >

align_output(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::align_output() const –> bool

align_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::align_pdb() const –> std::string

all_rna_fragments_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::all_rna_fragments_file() const –> std::string

allow_bulge(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_bulge() const –> bool

allow_consecutive_bulges(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_consecutive_bulges() const –> bool

allow_fragment_moves_in_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_fragment_moves_in_bps() const –> bool

allowed_bulge_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allowed_bulge_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

assign(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, : pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::operator=(const class core::import_pose::options::RNA_DeNovoProtocolOptions &) –> class core::import_pose::options::RNA_DeNovoProtocolOptions &

autofilter(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::autofilter() const –> bool

autofilter_score_quantile(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::autofilter_score_quantile() const –> double

binary_rna_output(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::binary_rna_output() const –> bool

bps_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::bps_moves() const –> bool

center_jumps_in_single_stranded(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::center_jumps_in_single_stranded() const –> bool

chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chainbreak_weight() const –> double

chunk_initialization_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_initialization_pdb_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

chunk_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_pdb_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

chunk_silent_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_silent_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

clone(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::clone() const –> class std::shared_ptr<class core::import_pose::options::RNA_DeNovoProtocolOptions>

close_loops(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::close_loops() const –> bool

close_loops_after_each_move(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::close_loops_after_each_move() const –> bool

convert_protein_centroid(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::convert_protein_centroid() const –> bool

cst_gap(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::cst_gap() const –> bool

deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::deriv_check() const –> bool

disallow_bps_at_extra_min_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::disallow_bps_at_extra_min_res() const –> bool

disallow_realign(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::disallow_realign() const –> bool

dock_chunks(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_chunks() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

dock_chunks_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_chunks_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

dock_each_chunk(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_each_chunk() const –> bool

dock_each_chunk_per_chain(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_each_chunk_per_chain() const –> bool

dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dock_into_density() const –> bool

dock_into_density_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_into_density_legacy() const –> bool

docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::docking() const –> bool

docking_move_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::docking_move_size() const –> double

dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dump_pdb() const –> bool

dump_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::dump_stems() const –> bool

exhaustive_fragment_insertion(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::exhaustive_fragment_insertion() const –> unsigned long

extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_chi_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

filter_chain_closure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure() const –> bool

filter_chain_closure_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure_distance() const –> double

filter_chain_closure_halfway(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure_halfway() const –> bool

filter_lores_base_pairs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_lores_base_pairs() const –> bool

filter_lores_base_pairs_early(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_lores_base_pairs_early() const –> bool

filter_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_vdw() const –> bool

fixed_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::fixed_stems() const –> bool

frag_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::frag_size() const –> unsigned long

ft_close_chains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ft_close_chains() const –> bool

gradual_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::gradual_constraints() const –> bool

grid_vdw_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::grid_vdw_weight() const –> double

helical_substruct_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::helical_substruct_res() const –> const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &

helical_substructs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::helical_substructs() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

ignore_secstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ignore_secstruct() const –> bool

initial_structures_provided(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initial_structures_provided() const –> bool

initialize_for_farna_optimizer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, cycles: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initialize_for_farna_optimizer(const unsigned long &) –> void

initialize_from_command_line(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::initialize_from_command_line() –> void

initialize_from_options(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, opts: pyrosetta.rosetta.utility.options.OptionCollection) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::initialize_from_options(const class utility::options::OptionCollection &) –> void

initialize_from_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, tag: utility::tag::Tag) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::initialize_from_tag(const class std::shared_ptr<const class utility::tag::Tag> &) –> void

input_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::input_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

input_res_initialize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::input_res_initialize() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

jump_change_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_change_frequency() const –> double

jump_histogram_binwidth(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_binwidth() const –> double

jump_histogram_binwidth_rotvector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_binwidth_rotvector() const –> double

jump_histogram_boxsize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_boxsize() const –> double

jump_library_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_library_file() const –> std::string

linear_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::linear_chainbreak_weight() const –> double

static list_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::list_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static list_options_read(opts: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void

lores_scorefxn(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → str

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::lores_scorefxn() const –> std::string

max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::max_iter() const –> unsigned long

min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → str

C++: core::import_pose::options::RNA_MinimizerOptions::min_type() const –> std::string

minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_all_protein() const –> bool

minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_bps() const –> bool

minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_protein_sc() const –> bool

minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_rounds() const –> unsigned long

minimize_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::minimize_structure() const –> bool

minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimizer_use_coordinate_constraints() const –> bool

model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::model_with_density() const –> bool

monte_carlo_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::monte_carlo_cycles() const –> unsigned long

move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::move_first_rigid_body() const –> bool

nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::nblist_auto_update() const –> bool

new_fold_tree_initializer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::new_fold_tree_initializer() const –> bool

nstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → int

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::nstruct() const –> unsigned long

output_filters(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_filters() const –> bool

output_histogram_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_histogram_file() const –> std::string

output_jump_chainbreak(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_chainbreak() const –> bool

output_jump_o3p_to_o5p(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_o3p_to_o5p() const –> bool

output_jump_reference_RT_string(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_reference_RT_string() const –> std::string

output_jump_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

output_jump_target_xyz(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.numeric.xyzVector_double_t

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_target_xyz() const –> class numeric::xyzVector<double>

output_lores_silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_lores_silent_file() const –> bool

output_rotation_vector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_rotation_vector() const –> bool

output_score_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_score_file() const –> std::string

output_score_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_score_frequency() const –> unsigned long

override_refine_pose_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::override_refine_pose_rounds() const –> bool

overwrite(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::overwrite() const –> bool

parse_my_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, : utility::tag::Tag) → None

Initialize from the recursive “tag” structure.

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_pack_all() const –> bool

protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing() const –> bool

protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → float

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing_distance() const –> double

ramp_rnp_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ramp_rnp_vdw() const –> bool

randomize_init_rnp(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::randomize_init_rnp() const –> bool

refine_native_get_good_FT(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::refine_native_get_good_FT() const –> bool

refine_pose(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::refine_pose() const –> bool

relax_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::relax_structure() const –> bool

rmsd_screen(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rmsd_screen() const –> double

rna_protein_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking() const –> bool

rna_protein_docking_freq(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking_freq() const –> double

rna_protein_docking_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking_legacy() const –> bool

rnp_high_res_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_high_res_cycles() const –> double

rnp_high_res_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_high_res_relax() const –> bool

rnp_min_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_min_first() const –> bool

rnp_pack_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_pack_first() const –> bool

rnp_ramp_rep(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_ramp_rep() const –> bool

root_at_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::root_at_first_rigid_body() const –> bool

rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rounds() const –> unsigned long

save_jump_histogram(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::save_jump_histogram() const –> bool

save_times(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::save_times() const –> bool

set_VDW_rep_screen_info(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_VDW_rep_screen_info(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_align_output(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_align_output(const bool) –> void

set_align_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_align_pdb(const std::string &) –> void

set_all_rna_fragments_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_all_rna_fragments_file(const std::string &) –> void

set_allow_bulge(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_bulge(const bool &) –> void

set_allow_consecutive_bulges(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_consecutive_bulges(const bool &) –> void

set_allow_fragment_moves_in_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_fragment_moves_in_bps(const bool &) –> void

set_allowed_bulge_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allowed_bulge_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_autofilter(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_autofilter(const bool &) –> void

set_autofilter_score_quantile(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_autofilter_score_quantile(const double &) –> void

set_binary_rna_output(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_binary_rna_output(const bool) –> void

set_bps_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_bps_moves(const bool &) –> void

set_center_jumps_in_single_stranded(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_center_jumps_in_single_stranded(const bool &) –> void

set_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chainbreak_weight(const double &) –> void

set_chunk_initialization_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_initialization_pdb_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_chunk_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, chunk_pdb_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_pdb_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_chunk_silent_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, chunk_silent_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_silent_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_close_loops(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_close_loops(const bool) –> void

set_close_loops_after_each_move(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_close_loops_after_each_move(const bool &) –> void

set_convert_protein_centroid(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_convert_protein_centroid(const bool &) –> void

set_cst_gap(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_cst_gap(const bool) –> void

set_deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_deriv_check(const bool &) –> void

set_disallow_bps_at_extra_min_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_disallow_bps_at_extra_min_res(const bool &) –> void

set_disallow_realign(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_disallow_realign(const bool) –> void

set_dock_chunks(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, dock_chunks: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_chunks(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_dock_chunks_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_chunks_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_dock_each_chunk(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_each_chunk(const bool &) –> void

set_dock_each_chunk_per_chain(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_each_chunk_per_chain(const bool &) –> void

set_dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dock_into_density(const bool &) –> void

set_dock_into_density_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_into_density_legacy(const bool &) –> void

set_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_docking(const bool &) –> void

set_docking_move_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_docking_move_size(const double &) –> void

set_dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dump_pdb(const bool) –> void

set_dump_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_dump_stems(const bool) –> void

set_exhaustive_fragment_insertion(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_exhaustive_fragment_insertion(const unsigned long) –> void

set_extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_chi_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_chi_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_filter_chain_closure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure(const bool) –> void

set_filter_chain_closure_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure_distance(const double) –> void

set_filter_chain_closure_halfway(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure_halfway(const bool) –> void

set_filter_lores_base_pairs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_lores_base_pairs(const bool) –> void

set_filter_lores_base_pairs_early(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_lores_base_pairs_early(const bool) –> void

set_filter_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_vdw(const bool) –> void

set_fixed_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_fixed_stems(const bool &) –> void

set_frag_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_frag_size(const unsigned long &) –> void

set_ft_close_chains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ft_close_chains(const bool &) –> void

set_gradual_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_gradual_constraints(const bool) –> void

set_grid_vdw_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_grid_vdw_weight(const double &) –> void

set_helical_substruct_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_helical_substruct_res(const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &) –> void

set_helical_substructs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_helical_substructs(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_ignore_secstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ignore_secstruct(const bool &) –> void

set_initial_structures_provided(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_initial_structures_provided(const bool &) –> void

set_input_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_input_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_input_res_initialize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_input_res_initialize(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_jump_change_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_change_frequency(const double &) –> void

set_jump_histogram_binwidth(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_binwidth(const double &) –> void

set_jump_histogram_binwidth_rotvector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_binwidth_rotvector(const double &) –> void

set_jump_histogram_boxsize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_boxsize(const double &) –> void

set_jump_library_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_library_file(const std::string &) –> void

set_linear_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_linear_chainbreak_weight(const double &) –> void

set_lores_scorefxn(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: str) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_lores_scorefxn(const std::string &) –> void

set_max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_max_iter(const unsigned long &) –> void

set_min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: str) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_min_type(const std::string &) –> void

set_minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_all_protein(const bool &) –> void

set_minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_bps(const bool &) –> void

set_minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_protein_sc(const bool &) –> void

set_minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_rounds(const unsigned long &) –> void

set_minimize_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_minimize_structure(const bool &) –> void

set_minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimizer_use_coordinate_constraints(const bool &) –> void

set_model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_model_with_density(const bool &) –> void

set_monte_carlo_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_monte_carlo_cycles(const unsigned long) –> void

set_move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_move_first_rigid_body(const bool &) –> void

set_nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_nblist_auto_update(const bool &) –> void

set_new_fold_tree_initializer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_new_fold_tree_initializer(const bool &) –> void

set_nstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: int) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_nstruct(const unsigned long) –> void

set_output_filters(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_filters(const bool) –> void

set_output_histogram_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_histogram_file(const std::string &) –> void

set_output_jump_chainbreak(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_chainbreak(const bool &) –> void

set_output_jump_o3p_to_o5p(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_o3p_to_o5p(const bool &) –> void

set_output_jump_reference_RT_string(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_reference_RT_string(const std::string &) –> void

set_output_jump_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, output_jump_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_output_jump_target_xyz(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.numeric.xyzVector_double_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_target_xyz(const class numeric::xyzVector<double> &) –> void

set_output_lores_silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_lores_silent_file(const bool) –> void

set_output_rotation_vector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_rotation_vector(const bool &) –> void

set_output_score_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_score_file(const std::string &) –> void

set_output_score_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_score_frequency(const unsigned long &) –> void

set_override_refine_pose_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_override_refine_pose_rounds(const bool &) –> void

set_overwrite(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_overwrite(const bool) –> void

set_protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_pack_all(const bool &) –> void

set_protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing(const bool &) –> void

set_protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: float) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing_distance(const double &) –> void

set_ramp_rnp_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ramp_rnp_vdw(const bool &) –> void

set_randomize_init_rnp(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_randomize_init_rnp(const bool &) –> void

set_refine_native_get_good_FT(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_refine_native_get_good_FT(const bool &) –> void

set_refine_pose(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_refine_pose(const bool &) –> void

set_relax_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_relax_structure(const bool &) –> void

set_rmsd_screen(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rmsd_screen(const double) –> void

set_rna_protein_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking(const bool &) –> void

set_rna_protein_docking_freq(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking_freq(const double &) –> void

set_rna_protein_docking_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking_legacy(const bool &) –> void

set_rnp_high_res_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_high_res_cycles(const double &) –> void

set_rnp_high_res_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_high_res_relax(const bool &) –> void

set_rnp_min_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_min_first(const bool &) –> void

set_rnp_pack_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_pack_first(const bool &) –> void

set_rnp_ramp_rep(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_ramp_rep(const bool &) –> void

set_root_at_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_root_at_first_rigid_body(const bool &) –> void

set_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rounds(const unsigned long &) –> void

set_save_jump_histogram(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_save_jump_histogram(const bool &) –> void

set_save_times(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_save_times(const bool) –> void

set_silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: str) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_silent_file(const std::string &) –> void

set_simple_rmsd_cutoff_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_simple_rmsd_cutoff_relax(const bool &) –> void

set_skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_skip_o2prime_trials(const bool &) –> void

set_small_docking_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_small_docking_moves(const bool &) –> void

set_staged_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_staged_constraints(const bool &) –> void

set_superimpose_over_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_superimpose_over_all(const bool &) –> void

set_suppress_bp_constraint(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_suppress_bp_constraint(const double &) –> void

set_symm_hack_arity(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_symm_hack_arity(const unsigned long) –> void

set_temperature(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_temperature(const double) –> void

set_titrate_stack_bonus(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_titrate_stack_bonus(const bool &) –> void

set_use_chem_shift_data(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_use_chem_shift_data(const bool &) –> void

set_use_legacy_setup(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions, setting: bool) → None

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::set_use_legacy_setup(const bool) –> void

set_use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_use_nblist(const bool &) –> void

set_user_defined_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_user_defined_cycles(const bool &) –> void

set_vall_torsions_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_vall_torsions_file(const std::string &) –> void

set_vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_vary_bond_geometry(const bool &) –> void

set_vdw_rep_screen_include_sidechains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_vdw_rep_screen_include_sidechains(const bool) –> void

set_verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_verbose(const bool &) –> void

silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → str

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::silent_file() const –> std::string

simple_rmsd_cutoff_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::simple_rmsd_cutoff_relax() const –> bool

skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::skip_o2prime_trials() const –> bool

small_docking_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::small_docking_moves() const –> bool

staged_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::staged_constraints() const –> bool

superimpose_over_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::superimpose_over_all() const –> bool

suppress_bp_constraint(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::suppress_bp_constraint() const –> double

symm_hack_arity(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::symm_hack_arity() const –> unsigned long

temperature(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::temperature() const –> double

titrate_stack_bonus(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::titrate_stack_bonus() const –> bool

type(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → str

The class name (its type) for a particular instance.

This function allows for better error message delivery.

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::type() const –> std::string

use_chem_shift_data(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::use_chem_shift_data() const –> bool

use_legacy_setup(self: pyrosetta.rosetta.core.import_pose.options.RNA_DeNovoProtocolOptions) → bool

C++: core::import_pose::options::RNA_DeNovoProtocolOptions::use_legacy_setup() const –> bool

use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::use_nblist() const –> bool

user_defined_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::user_defined_cycles() const –> bool

vall_torsions_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::vall_torsions_file() const –> std::string

vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::vary_bond_geometry() const –> bool

vdw_rep_screen_include_sidechains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::vdw_rep_screen_include_sidechains() const –> bool

verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::verbose() const –> bool

class pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions

Bases: RNA_MinimizerOptions

VDW_rep_screen_info(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::VDW_rep_screen_info() const –> class utility::vector1<std::string, class std::allocator<std::string > >

align_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::align_pdb() const –> std::string

all_rna_fragments_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::all_rna_fragments_file() const –> std::string

allow_bulge(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_bulge() const –> bool

allow_consecutive_bulges(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_consecutive_bulges() const –> bool

allow_fragment_moves_in_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allow_fragment_moves_in_bps() const –> bool

allowed_bulge_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::allowed_bulge_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

assign(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, : pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::operator=(const class core::import_pose::options::RNA_FragmentMonteCarloOptions &) –> class core::import_pose::options::RNA_FragmentMonteCarloOptions &

autofilter(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::autofilter() const –> bool

autofilter_score_quantile(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::autofilter_score_quantile() const –> double

bps_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::bps_moves() const –> bool

center_jumps_in_single_stranded(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::center_jumps_in_single_stranded() const –> bool

chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chainbreak_weight() const –> double

chunk_initialization_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_initialization_pdb_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

chunk_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_pdb_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

chunk_silent_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::chunk_silent_files() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

clone(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::clone() const –> class std::shared_ptr<class core::import_pose::options::RNA_FragmentMonteCarloOptions>

close_loops(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::close_loops() const –> bool

close_loops_after_each_move(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::close_loops_after_each_move() const –> bool

convert_protein_centroid(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::convert_protein_centroid() const –> bool

deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::deriv_check() const –> bool

disallow_bps_at_extra_min_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::disallow_bps_at_extra_min_res() const –> bool

disallow_realign(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::disallow_realign() const –> bool

dock_chunks(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_chunks() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

dock_chunks_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_chunks_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

dock_each_chunk(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_each_chunk() const –> bool

dock_each_chunk_per_chain(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_each_chunk_per_chain() const –> bool

dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dock_into_density() const –> bool

dock_into_density_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::dock_into_density_legacy() const –> bool

docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::docking() const –> bool

docking_move_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::docking_move_size() const –> double

dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dump_pdb() const –> bool

exhaustive_fragment_insertion(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::exhaustive_fragment_insertion() const –> unsigned long

extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_chi_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

filter_chain_closure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure() const –> bool

filter_chain_closure_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure_distance() const –> double

filter_chain_closure_halfway(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_chain_closure_halfway() const –> bool

filter_lores_base_pairs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_lores_base_pairs() const –> bool

filter_lores_base_pairs_early(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_lores_base_pairs_early() const –> bool

filter_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::filter_vdw() const –> bool

fixed_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::fixed_stems() const –> bool

frag_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::frag_size() const –> unsigned long

ft_close_chains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ft_close_chains() const –> bool

gradual_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::gradual_constraints() const –> bool

grid_vdw_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::grid_vdw_weight() const –> double

helical_substruct_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::helical_substruct_res() const –> const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &

helical_substructs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_std_string

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::helical_substructs() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

ignore_secstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ignore_secstruct() const –> bool

initial_structures_provided(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initial_structures_provided() const –> bool

initialize_for_farna_optimizer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, cycles: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initialize_for_farna_optimizer(const unsigned long &) –> void

initialize_from_command_line(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initialize_from_command_line() –> void

initialize_from_options(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, opts: pyrosetta.rosetta.utility.options.OptionCollection) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initialize_from_options(const class utility::options::OptionCollection &) –> void

initialize_from_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, tag: utility::tag::Tag) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::initialize_from_tag(const class std::shared_ptr<const class utility::tag::Tag> &) –> void

input_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::input_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

input_res_initialize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::input_res_initialize() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

jump_change_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_change_frequency() const –> double

jump_histogram_binwidth(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_binwidth() const –> double

jump_histogram_binwidth_rotvector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_binwidth_rotvector() const –> double

jump_histogram_boxsize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_histogram_boxsize() const –> double

jump_library_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::jump_library_file() const –> std::string

linear_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::linear_chainbreak_weight() const –> double

static list_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::list_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static list_options_read(opts: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void

max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::max_iter() const –> unsigned long

min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → str

C++: core::import_pose::options::RNA_MinimizerOptions::min_type() const –> std::string

minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_all_protein() const –> bool

minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_bps() const –> bool

minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_protein_sc() const –> bool

minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_rounds() const –> unsigned long

minimize_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::minimize_structure() const –> bool

minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimizer_use_coordinate_constraints() const –> bool

model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::model_with_density() const –> bool

monte_carlo_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::monte_carlo_cycles() const –> unsigned long

move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::move_first_rigid_body() const –> bool

nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::nblist_auto_update() const –> bool

new_fold_tree_initializer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::new_fold_tree_initializer() const –> bool

output_filters(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_filters() const –> bool

output_histogram_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_histogram_file() const –> std::string

output_jump_chainbreak(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_chainbreak() const –> bool

output_jump_o3p_to_o5p(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_o3p_to_o5p() const –> bool

output_jump_reference_RT_string(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_reference_RT_string() const –> std::string

output_jump_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

output_jump_target_xyz(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → pyrosetta.rosetta.numeric.xyzVector_double_t

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_jump_target_xyz() const –> class numeric::xyzVector<double>

output_lores_silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_lores_silent_file() const –> bool

output_rotation_vector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_rotation_vector() const –> bool

output_score_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_score_file() const –> std::string

output_score_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::output_score_frequency() const –> unsigned long

override_refine_pose_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::override_refine_pose_rounds() const –> bool

parse_my_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, : utility::tag::Tag) → None

Initialize from the recursive “tag” structure.

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_pack_all() const –> bool

protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing() const –> bool

protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → float

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing_distance() const –> double

ramp_rnp_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::ramp_rnp_vdw() const –> bool

randomize_init_rnp(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::randomize_init_rnp() const –> bool

refine_native_get_good_FT(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::refine_native_get_good_FT() const –> bool

refine_pose(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::refine_pose() const –> bool

relax_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::relax_structure() const –> bool

rmsd_screen(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rmsd_screen() const –> double

rna_protein_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking() const –> bool

rna_protein_docking_freq(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking_freq() const –> double

rna_protein_docking_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rna_protein_docking_legacy() const –> bool

rnp_high_res_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_high_res_cycles() const –> double

rnp_high_res_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_high_res_relax() const –> bool

rnp_min_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_min_first() const –> bool

rnp_pack_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_pack_first() const –> bool

rnp_ramp_rep(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rnp_ramp_rep() const –> bool

root_at_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::root_at_first_rigid_body() const –> bool

rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::rounds() const –> unsigned long

save_jump_histogram(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::save_jump_histogram() const –> bool

save_times(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::save_times() const –> bool

set_VDW_rep_screen_info(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_VDW_rep_screen_info(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_align_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_align_pdb(const std::string &) –> void

set_all_rna_fragments_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_all_rna_fragments_file(const std::string &) –> void

set_allow_bulge(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_bulge(const bool &) –> void

set_allow_consecutive_bulges(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_consecutive_bulges(const bool &) –> void

set_allow_fragment_moves_in_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allow_fragment_moves_in_bps(const bool &) –> void

set_allowed_bulge_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_allowed_bulge_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_autofilter(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_autofilter(const bool &) –> void

set_autofilter_score_quantile(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_autofilter_score_quantile(const double &) –> void

set_bps_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_bps_moves(const bool &) –> void

set_center_jumps_in_single_stranded(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_center_jumps_in_single_stranded(const bool &) –> void

set_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chainbreak_weight(const double &) –> void

set_chunk_initialization_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_initialization_pdb_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_chunk_pdb_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, chunk_pdb_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_pdb_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_chunk_silent_files(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, chunk_silent_files: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_chunk_silent_files(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_close_loops(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_close_loops(const bool) –> void

set_close_loops_after_each_move(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_close_loops_after_each_move(const bool &) –> void

set_convert_protein_centroid(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_convert_protein_centroid(const bool &) –> void

set_deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_deriv_check(const bool &) –> void

set_disallow_bps_at_extra_min_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_disallow_bps_at_extra_min_res(const bool &) –> void

set_disallow_realign(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_disallow_realign(const bool) –> void

set_dock_chunks(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, dock_chunks: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_chunks(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_dock_chunks_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_chunks_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_dock_each_chunk(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_each_chunk(const bool &) –> void

set_dock_each_chunk_per_chain(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_each_chunk_per_chain(const bool &) –> void

set_dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dock_into_density(const bool &) –> void

set_dock_into_density_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_dock_into_density_legacy(const bool &) –> void

set_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_docking(const bool &) –> void

set_docking_move_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_docking_move_size(const double &) –> void

set_dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dump_pdb(const bool) –> void

set_exhaustive_fragment_insertion(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_exhaustive_fragment_insertion(const unsigned long) –> void

set_extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_chi_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_chi_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_filter_chain_closure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure(const bool) –> void

set_filter_chain_closure_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure_distance(const double) –> void

set_filter_chain_closure_halfway(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_chain_closure_halfway(const bool) –> void

set_filter_lores_base_pairs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_lores_base_pairs(const bool) –> void

set_filter_lores_base_pairs_early(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_lores_base_pairs_early(const bool) –> void

set_filter_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_filter_vdw(const bool) –> void

set_fixed_stems(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_fixed_stems(const bool &) –> void

set_frag_size(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_frag_size(const unsigned long &) –> void

set_ft_close_chains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ft_close_chains(const bool &) –> void

set_gradual_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_gradual_constraints(const bool) –> void

set_grid_vdw_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_grid_vdw_weight(const double &) –> void

set_helical_substruct_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_unsigned_long_std_allocator_unsigned_long_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_helical_substruct_res(const class utility::vector1<class utility::vector1<unsigned long, class std::allocator<unsigned long> >, class std::allocator<class utility::vector1<unsigned long, class std::allocator<unsigned long> > > > &) –> void

set_helical_substructs(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.utility.vector1_std_string) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_helical_substructs(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_ignore_secstruct(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ignore_secstruct(const bool &) –> void

set_initial_structures_provided(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_initial_structures_provided(const bool &) –> void

set_input_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_input_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_input_res_initialize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, input_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_input_res_initialize(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_jump_change_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_change_frequency(const double &) –> void

set_jump_histogram_binwidth(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_binwidth(const double &) –> void

set_jump_histogram_binwidth_rotvector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_binwidth_rotvector(const double &) –> void

set_jump_histogram_boxsize(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_histogram_boxsize(const double &) –> void

set_jump_library_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_jump_library_file(const std::string &) –> void

set_linear_chainbreak_weight(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_linear_chainbreak_weight(const double &) –> void

set_max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_max_iter(const unsigned long &) –> void

set_min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: str) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_min_type(const std::string &) –> void

set_minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_all_protein(const bool &) –> void

set_minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_bps(const bool &) –> void

set_minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_protein_sc(const bool &) –> void

set_minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_rounds(const unsigned long &) –> void

set_minimize_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_minimize_structure(const bool &) –> void

set_minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimizer_use_coordinate_constraints(const bool &) –> void

set_model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_model_with_density(const bool &) –> void

set_monte_carlo_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_monte_carlo_cycles(const unsigned long) –> void

set_move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_move_first_rigid_body(const bool &) –> void

set_nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_nblist_auto_update(const bool &) –> void

set_new_fold_tree_initializer(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_new_fold_tree_initializer(const bool &) –> void

set_output_filters(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_filters(const bool) –> void

set_output_histogram_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_histogram_file(const std::string &) –> void

set_output_jump_chainbreak(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_chainbreak(const bool &) –> void

set_output_jump_o3p_to_o5p(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_o3p_to_o5p(const bool &) –> void

set_output_jump_reference_RT_string(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_reference_RT_string(const std::string &) –> void

set_output_jump_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, output_jump_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_output_jump_target_xyz(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: pyrosetta.rosetta.numeric.xyzVector_double_t) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_jump_target_xyz(const class numeric::xyzVector<double> &) –> void

set_output_lores_silent_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_lores_silent_file(const bool) –> void

set_output_rotation_vector(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_rotation_vector(const bool &) –> void

set_output_score_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_score_file(const std::string &) –> void

set_output_score_frequency(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_output_score_frequency(const unsigned long &) –> void

set_override_refine_pose_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_override_refine_pose_rounds(const bool &) –> void

set_protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_pack_all(const bool &) –> void

set_protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing(const bool &) –> void

set_protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: float) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing_distance(const double &) –> void

set_ramp_rnp_vdw(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_ramp_rnp_vdw(const bool &) –> void

set_randomize_init_rnp(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_randomize_init_rnp(const bool &) –> void

set_refine_native_get_good_FT(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_refine_native_get_good_FT(const bool &) –> void

set_refine_pose(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_refine_pose(const bool &) –> void

set_relax_structure(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_relax_structure(const bool &) –> void

set_rmsd_screen(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rmsd_screen(const double) –> void

set_rna_protein_docking(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking(const bool &) –> void

set_rna_protein_docking_freq(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking_freq(const double &) –> void

set_rna_protein_docking_legacy(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rna_protein_docking_legacy(const bool &) –> void

set_rnp_high_res_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_high_res_cycles(const double &) –> void

set_rnp_high_res_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_high_res_relax(const bool &) –> void

set_rnp_min_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_min_first(const bool &) –> void

set_rnp_pack_first(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_pack_first(const bool &) –> void

set_rnp_ramp_rep(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rnp_ramp_rep(const bool &) –> void

set_root_at_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_root_at_first_rigid_body(const bool &) –> void

set_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_rounds(const unsigned long &) –> void

set_save_jump_histogram(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_save_jump_histogram(const bool &) –> void

set_save_times(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_save_times(const bool) –> void

set_simple_rmsd_cutoff_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_simple_rmsd_cutoff_relax(const bool &) –> void

set_skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_skip_o2prime_trials(const bool &) –> void

set_small_docking_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_small_docking_moves(const bool &) –> void

set_staged_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_staged_constraints(const bool &) –> void

set_superimpose_over_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_superimpose_over_all(const bool &) –> void

set_suppress_bp_constraint(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_suppress_bp_constraint(const double &) –> void

set_symm_hack_arity(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: int) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_symm_hack_arity(const unsigned long) –> void

set_temperature(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: float) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_temperature(const double) –> void

set_titrate_stack_bonus(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_titrate_stack_bonus(const bool &) –> void

set_use_chem_shift_data(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_use_chem_shift_data(const bool &) –> void

set_use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_use_nblist(const bool &) –> void

set_user_defined_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_user_defined_cycles(const bool &) –> void

set_vall_torsions_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: str) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_vall_torsions_file(const std::string &) –> void

set_vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_vary_bond_geometry(const bool &) –> void

set_vdw_rep_screen_include_sidechains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions, setting: bool) → None

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::set_vdw_rep_screen_include_sidechains(const bool) –> void

set_verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_verbose(const bool &) –> void

simple_rmsd_cutoff_relax(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::simple_rmsd_cutoff_relax() const –> bool

skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::skip_o2prime_trials() const –> bool

small_docking_moves(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::small_docking_moves() const –> bool

staged_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::staged_constraints() const –> bool

superimpose_over_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::superimpose_over_all() const –> bool

suppress_bp_constraint(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::suppress_bp_constraint() const –> double

symm_hack_arity(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → int

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::symm_hack_arity() const –> unsigned long

temperature(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → float

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::temperature() const –> double

titrate_stack_bonus(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::titrate_stack_bonus() const –> bool

type(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

The class name (its type) for a particular instance.

This function allows for better error message delivery.

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::type() const –> std::string

use_chem_shift_data(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::use_chem_shift_data() const –> bool

use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::use_nblist() const –> bool

user_defined_cycles(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::user_defined_cycles() const –> bool

vall_torsions_file(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → str

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::vall_torsions_file() const –> std::string

vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::vary_bond_geometry() const –> bool

vdw_rep_screen_include_sidechains(self: pyrosetta.rosetta.core.import_pose.options.RNA_FragmentMonteCarloOptions) → bool

C++: core::import_pose::options::RNA_FragmentMonteCarloOptions::vdw_rep_screen_include_sidechains() const –> bool

verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::verbose() const –> bool

class pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions

Bases: RNA_BasicOptions

assign(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, : pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions

C++: core::import_pose::options::RNA_MinimizerOptions::operator=(const class core::import_pose::options::RNA_MinimizerOptions &) –> class core::import_pose::options::RNA_MinimizerOptions &

clone(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions

C++: core::import_pose::options::RNA_MinimizerOptions::clone() const –> class std::shared_ptr<class core::import_pose::options::RNA_MinimizerOptions>

deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::deriv_check() const –> bool

dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dock_into_density() const –> bool

dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::dump_pdb() const –> bool

extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_chi_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → pyrosetta.rosetta.utility.vector1_unsigned_long

C++: core::import_pose::options::RNA_MinimizerOptions::extra_minimize_res() const –> const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &

initialize_from_command_line(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → None

C++: core::import_pose::options::RNA_MinimizerOptions::initialize_from_command_line() –> void

initialize_from_options(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, opts: pyrosetta.rosetta.utility.options.OptionCollection) → None

C++: core::import_pose::options::RNA_MinimizerOptions::initialize_from_options(const class utility::options::OptionCollection &) –> void

initialize_from_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, tag: utility::tag::Tag) → None

C++: core::import_pose::options::RNA_MinimizerOptions::initialize_from_tag(const class std::shared_ptr<const class utility::tag::Tag> &) –> void

static list_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None

C++: core::import_pose::options::RNA_MinimizerOptions::list_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

static list_options_read(opts: pyrosetta.rosetta.std.list_utility_keys_VariantKey_utility_options_OptionKey_t) → None

C++: core::import_pose::options::RNA_MinimizerOptions::list_options_read(class std::list<class utility::keys::VariantKey<class utility::options::OptionKey>, class std::allocator<class utility::keys::VariantKey<class utility::options::OptionKey> > > &) –> void

max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::max_iter() const –> unsigned long

min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → str

C++: core::import_pose::options::RNA_MinimizerOptions::min_type() const –> std::string

minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_all_protein() const –> bool

minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_bps() const –> bool

minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_protein_sc() const –> bool

minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → int

C++: core::import_pose::options::RNA_MinimizerOptions::minimize_rounds() const –> unsigned long

minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::minimizer_use_coordinate_constraints() const –> bool

model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::model_with_density() const –> bool

move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::move_first_rigid_body() const –> bool

nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::nblist_auto_update() const –> bool

parse_my_tag(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, : utility::tag::Tag) → None

Initialize from the recursive “tag” structure.

C++: core::import_pose::options::RNA_MinimizerOptions::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_pack_all() const –> bool

protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing() const –> bool

protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → float

C++: core::import_pose::options::RNA_MinimizerOptions::protein_packing_distance() const –> double

set_deriv_check(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_deriv_check(const bool &) –> void

set_dock_into_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dock_into_density(const bool &) –> void

set_dump_pdb(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_dump_pdb(const bool) –> void

set_extra_minimize_chi_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_chi_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_chi_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_extra_minimize_res(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, extra_minimize_res: pyrosetta.rosetta.utility.vector1_unsigned_long) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_extra_minimize_res(const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &) –> void

set_max_iter(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_max_iter(const unsigned long &) –> void

set_min_type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: str) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_min_type(const std::string &) –> void

set_minimize_all_protein(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_all_protein(const bool &) –> void

set_minimize_bps(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_bps(const bool &) –> void

set_minimize_protein_sc(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_protein_sc(const bool &) –> void

set_minimize_rounds(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: int) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimize_rounds(const unsigned long &) –> void

set_minimizer_use_coordinate_constraints(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_minimizer_use_coordinate_constraints(const bool &) –> void

set_model_with_density(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_model_with_density(const bool &) –> void

set_move_first_rigid_body(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_move_first_rigid_body(const bool &) –> void

set_nblist_auto_update(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_nblist_auto_update(const bool &) –> void

set_protein_pack_all(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_pack_all(const bool &) –> void

set_protein_packing(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing(const bool &) –> void

set_protein_packing_distance(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: float) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_protein_packing_distance(const double &) –> void

set_skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_skip_o2prime_trials(const bool &) –> void

set_use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_use_nblist(const bool &) –> void

set_vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions, setting: bool) → None

C++: core::import_pose::options::RNA_MinimizerOptions::set_vary_bond_geometry(const bool &) –> void

set_verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions, setting: bool) → None

C++: core::import_pose::options::RNA_BasicOptions::set_verbose(const bool &) –> void

skip_o2prime_trials(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::skip_o2prime_trials() const –> bool

type(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → str

The class name (its type) for a particular instance.

This function allows for better error message delivery.

C++: core::import_pose::options::RNA_MinimizerOptions::type() const –> std::string

use_nblist(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::use_nblist() const –> bool

vary_bond_geometry(self: pyrosetta.rosetta.core.import_pose.options.RNA_MinimizerOptions) → bool

C++: core::import_pose::options::RNA_MinimizerOptions::vary_bond_geometry() const –> bool

verbose(self: pyrosetta.rosetta.core.import_pose.options.RNA_BasicOptions) → bool

C++: core::import_pose::options::RNA_BasicOptions::verbose() const –> bool