simple_task_operations¶

Bindings for protocols::simple_task_operations namespace

class pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1¶

Bases: TaskOperation

apply(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::simple_task_operations::DockingNoRepack1::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1, : pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1) → pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1¶: C++: protocols::simple_task_operations::DockingNoRepack1::operator=(const class protocols::simple_task_operations::DockingNoRepack1 &) –> class protocols::simple_task_operations::DockingNoRepack1 &

clone(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack1) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::DockingNoRepack1::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

static keyname() → str¶: C++: protocols::simple_task_operations::DockingNoRepack1::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::DockingNoRepack1::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2¶

Bases: TaskOperation

apply(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::simple_task_operations::DockingNoRepack2::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2, : pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2) → pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2¶: C++: protocols::simple_task_operations::DockingNoRepack2::operator=(const class protocols::simple_task_operations::DockingNoRepack2 &) –> class protocols::simple_task_operations::DockingNoRepack2 &

clone(self: pyrosetta.rosetta.protocols.simple_task_operations.DockingNoRepack2) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::DockingNoRepack2::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

static keyname() → str¶: C++: protocols::simple_task_operations::DockingNoRepack2::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::DockingNoRepack2::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

class pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation¶

Bases: TaskOperation

add_movable_chain(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, additional_chain: int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::add_movable_chain(const int) –> void

add_movable_jump(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, additional_jump: int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::add_movable_jump(const int) –> void

apply(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.pack.task.PackerTask) → None¶

Change a packer task in some way. The input pose is the one to which the input: task will be later applied.

C++: core::pack::task::operation::TaskOperation::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, : pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation) → pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::operator=(const class protocols::simple_task_operations::InterfaceTaskOperation &) –> class protocols::simple_task_operations::InterfaceTaskOperation &

clone(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶

Create another task operation of the type matching the most-derived: version of the class.

C++: core::pack::task::operation::TaskOperation::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

static keyname() → str¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::keyname() –> std::string

movable_chains(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation) → pyrosetta.rosetta.utility.vector1_int¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::movable_chains() const –> const class utility::vector1<int, class std::allocator<int> > &

movable_jumps(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation) → pyrosetta.rosetta.utility.vector1_int¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::movable_jumps() const –> const class utility::vector1<int, class std::allocator<int> > &

parse_tag(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Used to parse an xml-like tag to load parameters and properties.

C++: core::pack::task::operation::TaskOperation::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_movable_chains(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, movable_chains: pyrosetta.rosetta.utility.vector1_int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::set_movable_chains(const class utility::vector1<int, class std::allocator<int> > &) –> void

set_movable_jumps(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, movable_jumps: pyrosetta.rosetta.utility.vector1_int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::set_movable_jumps(const class utility::vector1<int, class std::allocator<int> > &) –> void

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface¶

Bases: InterfaceTaskOperation

add_jump(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, rb_jump_in: int) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::add_jump(int) –> void

add_movable_chain(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, additional_chain: int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::add_movable_chain(const int) –> void

add_movable_jump(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, additional_jump: int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::add_movable_jump(const int) –> void

apply(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface¶: C++: protocols::simple_task_operations::RestrictToInterface::operator=(const class protocols::simple_task_operations::RestrictToInterface &) –> class protocols::simple_task_operations::RestrictToInterface &

clone(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::RestrictToInterface::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

distance(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, distance_in: float) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::distance(const double) –> void

static keyname() → str¶: C++: protocols::simple_task_operations::RestrictToInterface::keyname() –> std::string

movable_chains(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation) → pyrosetta.rosetta.utility.vector1_int¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::movable_chains() const –> const class utility::vector1<int, class std::allocator<int> > &

movable_jumps(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation) → pyrosetta.rosetta.utility.vector1_int¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::movable_jumps() const –> const class utility::vector1<int, class std::allocator<int> > &

parse_tag(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

rb_chain(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, chain_in: int) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::rb_chain(int) –> void

rb_jump(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, jump_in: int) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::rb_jump(int) –> void

set_movable_chains(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, movable_chains: pyrosetta.rosetta.utility.vector1_int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::set_movable_chains(const class utility::vector1<int, class std::allocator<int> > &) –> void

set_movable_jumps(self: pyrosetta.rosetta.protocols.simple_task_operations.InterfaceTaskOperation, movable_jumps: pyrosetta.rosetta.utility.vector1_int) → None¶: C++: protocols::simple_task_operations::InterfaceTaskOperation::set_movable_jumps(const class utility::vector1<int, class std::allocator<int> > &) –> void

symmetric_task(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterface, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::simple_task_operations::RestrictToInterface::symmetric_task(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator¶

Bases: TaskOperationCreator

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator¶: C++: protocols::simple_task_operations::RestrictToInterfaceCreator::operator=(const class protocols::simple_task_operations::RestrictToInterfaceCreator &) –> class protocols::simple_task_operations::RestrictToInterfaceCreator &

create_task_operation(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::RestrictToInterfaceCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator) → str¶: C++: protocols::simple_task_operations::RestrictToInterfaceCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToInterfaceCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToInterfaceCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → bool¶

Indicate whether we skip adding citation information to the XML schema.

False for any real task operation. True only for dummy task operations created for unit tests.

C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops¶

Bases: TaskOperation

apply(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶

Apply this operation to the packer task.

C++: protocols::simple_task_operations::RestrictToLoops::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops¶: C++: protocols::simple_task_operations::RestrictToLoops::operator=(const class protocols::simple_task_operations::RestrictToLoops &) –> class protocols::simple_task_operations::RestrictToLoops &

clone(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶

Return a deep-copied OP.

C++: protocols::simple_task_operations::RestrictToLoops::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

design_loop(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → bool¶

Return true if design is allowed.

C++: protocols::simple_task_operations::RestrictToLoops::design_loop() const –> bool

static keyname() → str¶: C++: protocols::simple_task_operations::RestrictToLoops::keyname() –> std::string

loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → pyrosetta.rosetta.protocols.loops.Loops¶

Return the loops allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::loops() const –> class std::shared_ptr<const class protocols::loops::Loops>

parse_tag(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

Configure from a RosettaScripts XML tag.

C++: protocols::simple_task_operations::RestrictToLoops::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

static provide_attributes(attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::simple_task_operations::RestrictToLoops::provide_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToLoops::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

restrict_only_design_to_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → bool¶

Return true if we are restricting to only design.: AKA RestrictDesignToLoops.

C++: protocols::simple_task_operations::RestrictToLoops::restrict_only_design_to_loops() const –> bool

set_design_loop(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, design_loop: bool) → None¶

Specify whether or not design is allowed.

C++: protocols::simple_task_operations::RestrictToLoops::set_design_loop(bool) –> void

set_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, loops: pyrosetta.rosetta.protocols.loops.Loops) → None¶

Specify the loops that will be allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::set_loops(class std::shared_ptr<const class protocols::loops::Loops>) –> void

set_loops_from_file(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, loops_file: str) → None¶

Specify the loops that will be allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::set_loops_from_file(std::string) –> void

set_restrict_only_design_to_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, restrict_only_design: bool) → None¶

Specify whether to restrict only design to loops/neighbors: AKA RestrictDesignToLoops. Does not disable packing for any residue. Implies and sets design_loop to true.

C++: protocols::simple_task_operations::RestrictToLoops::set_restrict_only_design_to_loops(bool) –> void

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors¶

Bases: RestrictToLoops

This class allows the selection for packing (and possibly design) of residues contained in a Loops object as well as the neighbors within a specified cutoff distance, with the default and maximum cutoff at 10.0 A.

apply(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::operator=(const class protocols::simple_task_operations::RestrictToLoopsAndNeighbors &) –> class protocols::simple_task_operations::RestrictToLoopsAndNeighbors &

clone(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶

RestrictToLoops::clone

C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

cutoff_distance(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors) → float¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::cutoff_distance() const –> double

design_loop(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → bool¶

Return true if design is allowed.

C++: protocols::simple_task_operations::RestrictToLoops::design_loop() const –> bool

design_neighbors(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors) → bool¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::design_neighbors() const –> bool

include_neighbors(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors) → bool¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::include_neighbors() const –> bool

static keyname() → str¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::keyname() –> std::string

loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → pyrosetta.rosetta.protocols.loops.Loops¶

Return the loops allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::loops() const –> class std::shared_ptr<const class protocols::loops::Loops>

parse_tag(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, tag: pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶

RestrictToLoops::parse_tag

C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

static provide_attributes(attributes: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::simple_task_operations::RestrictToLoops::provide_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

restrict_only_design_to_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops) → bool¶

Return true if we are restricting to only design.: AKA RestrictDesignToLoops.

C++: protocols::simple_task_operations::RestrictToLoops::restrict_only_design_to_loops() const –> bool

set_cutoff_distance(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, cutoff_distance: float) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_cutoff_distance(double) –> void

set_design_loop(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, design_loop: bool) → None¶

Specify whether or not design is allowed.

C++: protocols::simple_task_operations::RestrictToLoops::set_design_loop(bool) –> void

set_design_neighbors(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, design_neighbors: bool) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_design_neighbors(bool) –> void

set_include_neighbors(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighbors, include_neighbors: bool) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighbors::set_include_neighbors(bool) –> void

set_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, loops: pyrosetta.rosetta.protocols.loops.Loops) → None¶

Specify the loops that will be allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::set_loops(class std::shared_ptr<const class protocols::loops::Loops>) –> void

set_loops_from_file(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, loops_file: str) → None¶

Specify the loops that will be allowed to pack.

C++: protocols::simple_task_operations::RestrictToLoops::set_loops_from_file(std::string) –> void

set_restrict_only_design_to_loops(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoops, restrict_only_design: bool) → None¶

Specify whether to restrict only design to loops/neighbors: AKA RestrictDesignToLoops. Does not disable packing for any residue. Implies and sets design_loop to true.

C++: protocols::simple_task_operations::RestrictToLoops::set_restrict_only_design_to_loops(bool) –> void

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator¶

Bases: TaskOperationCreator

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::operator=(const class protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator &) –> class protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator &

create_task_operation(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator) → str¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsAndNeighborsCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsAndNeighborsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → bool¶

Indicate whether we skip adding citation information to the XML schema.

False for any real task operation. True only for dummy task operations created for unit tests.

C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool

class pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator¶

Bases: TaskOperationCreator

assign(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator, : pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator) → pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator¶: C++: protocols::simple_task_operations::RestrictToLoopsCreator::operator=(const class protocols::simple_task_operations::RestrictToLoopsCreator &) –> class protocols::simple_task_operations::RestrictToLoopsCreator &

create_task_operation(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::simple_task_operations::RestrictToLoopsCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator) → str¶: C++: protocols::simple_task_operations::RestrictToLoopsCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.simple_task_operations.RestrictToLoopsCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::simple_task_operations::RestrictToLoopsCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → bool¶

Indicate whether we skip adding citation information to the XML schema.

False for any real task operation. True only for dummy task operations created for unit tests.

C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool