rotamer_recovery¶

Bindings for protocols::rotamer_recovery namespace

class pyrosetta.rosetta.protocols.rotamer_recovery.OutputLevel¶

Bases: pybind11_object

Members:

OL_full

OL_features

OL_none

OL_features = <OutputLevel.OL_features: 2>¶

OL_full = <OutputLevel.OL_full: 1>¶

OL_none = <OutputLevel.OL_none: 3>¶

property name¶

property value¶

class pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, : pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman) → pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman¶: C++: protocols::rotamer_recovery::PerNativeRRReporterHuman::operator=(const class protocols::rotamer_recovery::PerNativeRRReporterHuman &) –> class protocols::rotamer_recovery::PerNativeRRReporterHuman &

initialized(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman) → bool¶: C++: protocols::rotamer_recovery::PerNativeRRReporterHuman::initialized() const –> bool

report_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, : pyrosetta.rosetta.core.pose.Pose, res: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::PerNativeRRReporterHuman::report_rotamer_recovery(const class core::pose::Pose &, const class core::conformation::Residue &, double, bool) –> void

set_native(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, native_pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::rotamer_recovery::PerNativeRRReporterHuman::set_native(const class core::pose::Pose &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, out: pyrosetta.rosetta.std.ostream) -> None
show(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, out: pyrosetta.rosetta.std.ostream, column_width: int) -> None
show(self: pyrosetta.rosetta.protocols.rotamer_recovery.PerNativeRRReporterHuman, out: pyrosetta.rosetta.std.ostream, column_width: int, precision: int) -> None

C++: protocols::rotamer_recovery::PerNativeRRReporterHuman::show(std::ostream &, unsigned long, unsigned long) const –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶

Bases: pybind11_object

The comparison functionality for the rotamer recovery test

Besides implementing the interface given in the base class RRComparer each RRComparer should have an entry in the conevience RotamerRecovery constructor so its use can be indicated by name.

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparer::operator=(const class protocols::rotamer_recovery::RRComparer &) –> class protocols::rotamer_recovery::RRComparer &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer) → str¶: C++: protocols::rotamer_recovery::RRComparer::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer) → str¶: C++: protocols::rotamer_recovery::RRComparer::get_parameters() const –> std::string

measure_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → bool¶: C++: protocols::rotamer_recovery::RRComparer::measure_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double &, bool &) –> bool

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRComparer::parse_attributes_from_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, absolute_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparer::set_absolute_threshold(const double) –> void

set_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, recovery_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparer::set_recovery_threshold(const double) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD¶

Bases: RRComparer

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::operator=(const class protocols::rotamer_recovery::RRComparerAutomorphicRMSD &) –> class protocols::rotamer_recovery::RRComparerAutomorphicRMSD &

get_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → float¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_absolute_threshold() const –> double

get_include_backbone_atoms(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → bool¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_include_backbone_atoms() const –> bool

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → str¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → str¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_parameters() const –> std::string

get_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD) → float¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_recovery_threshold() const –> double

measure_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → bool¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::measure_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double &, bool &) –> bool

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRComparer::parse_attributes_from_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD, absolute_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::set_absolute_threshold(const double) –> void

set_include_backbone_atoms(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD, include_backbone_atoms: bool) → None¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::set_include_backbone_atoms(const bool) –> void

set_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSD, recovery_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSD::set_recovery_threshold(const double) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator¶

Bases: RRComparerCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator::operator=(const class protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator &) –> class protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator &

create_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator::create_comparer() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerAutomorphicRMSDCreator) → str¶: C++: protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff¶

Bases: RRComparer

static append_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::operator=(const class protocols::rotamer_recovery::RRComparerChiDiff &) –> class protocols::rotamer_recovery::RRComparerChiDiff &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff) → str¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff) → str¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::get_parameters() const –> std::string

measure_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → bool¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::measure_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double &, bool &) –> bool

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::parse_attributes_from_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, setting: float) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::set_absolute_threshold(const double) –> void

set_max_chi_considered(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, max_chi: int) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::set_max_chi_considered(const unsigned long) –> void

set_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiff, setting: float) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiff::set_recovery_threshold(const double) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator¶

Bases: RRComparerCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerChiDiffCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator¶: C++: protocols::rotamer_recovery::RRComparerChiDiffCreator::operator=(const class protocols::rotamer_recovery::RRComparerChiDiffCreator &) –> class protocols::rotamer_recovery::RRComparerChiDiffCreator &

create_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparerChiDiffCreator::create_comparer() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerChiDiffCreator) → str¶: C++: protocols::rotamer_recovery::RRComparerChiDiffCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator¶

Bases: pybind11_object

The Creator class is responsible for creating a particular mover class.

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator¶: C++: protocols::rotamer_recovery::RRComparerCreator::operator=(const class protocols::rotamer_recovery::RRComparerCreator &) –> class protocols::rotamer_recovery::RRComparerCreator &

create_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparerCreator::create_comparer() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerCreator) → str¶: C++: protocols::rotamer_recovery::RRComparerCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff¶

Bases: RRComparer

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::operator=(const class protocols::rotamer_recovery::RRComparerElecDensDiff &) –> class protocols::rotamer_recovery::RRComparerElecDensDiff &

get_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff) → float¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::get_absolute_threshold() const –> double

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff) → str¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff) → str¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::get_parameters() const –> std::string

get_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff) → float¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::get_recovery_threshold() const –> double

measure_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → bool¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::measure_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double &, bool &) –> bool

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRComparer::parse_attributes_from_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff, absolute_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::set_absolute_threshold(const double) –> void

set_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiff, recovery_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiff::set_recovery_threshold(const double) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator¶

Bases: RRComparerCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiffCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiffCreator::operator=(const class protocols::rotamer_recovery::RRComparerElecDensDiffCreator &) –> class protocols::rotamer_recovery::RRComparerElecDensDiffCreator &

create_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiffCreator::create_comparer() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerElecDensDiffCreator) → str¶: C++: protocols::rotamer_recovery::RRComparerElecDensDiffCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins¶

Bases: RRComparer

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins¶: C++: protocols::rotamer_recovery::RRComparerRotBins::operator=(const class protocols::rotamer_recovery::RRComparerRotBins &) –> class protocols::rotamer_recovery::RRComparerRotBins &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins) → str¶: C++: protocols::rotamer_recovery::RRComparerRotBins::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins) → str¶: C++: protocols::rotamer_recovery::RRComparerRotBins::get_parameters() const –> std::string

measure_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → bool¶: C++: protocols::rotamer_recovery::RRComparerRotBins::measure_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double &, bool &) –> bool

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRComparerRotBins::parse_attributes_from_tag(class std::shared_ptr<const class utility::tag::Tag>) –> void

set_absolute_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins, absolute_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerRotBins::set_absolute_threshold(const double) –> void

set_recovery_threshold(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBins, recovery_threshold: float) → None¶: C++: protocols::rotamer_recovery::RRComparerRotBins::set_recovery_threshold(const double) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator¶

Bases: RRComparerCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRComparerRotBinsCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator¶: C++: protocols::rotamer_recovery::RRComparerRotBinsCreator::operator=(const class protocols::rotamer_recovery::RRComparerRotBinsCreator &) –> class protocols::rotamer_recovery::RRComparerRotBinsCreator &

create_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RRComparerRotBinsCreator::create_comparer() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparerRotBinsCreator) → str¶: C++: protocols::rotamer_recovery::RRComparerRotBinsCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶

Bases: pybind11_object

The protocol to run to compute the rotamer recovery the rotamer recovery test

Besides implementing the interface given in the base class RRProtocol each RRProtocol should have an entry in the convenience RotamerRecovery constructor so its use can be indicated by name.

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocol::operator=(const class protocols::rotamer_recovery::RRProtocol &) –> class protocols::rotamer_recovery::RRProtocol &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol) → str¶: C++: protocols::rotamer_recovery::RRProtocol::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol) → str¶: C++: protocols::rotamer_recovery::RRProtocol::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocol::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator¶

Bases: pybind11_object

The Creator class is responsible for creating a particular mover class.

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator¶: C++: protocols::rotamer_recovery::RRProtocolCreator::operator=(const class protocols::rotamer_recovery::RRProtocolCreator &) –> class protocols::rotamer_recovery::RRProtocolCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack¶: C++: protocols::rotamer_recovery::RRProtocolMinPack::operator=(const class protocols::rotamer_recovery::RRProtocolMinPack &) –> class protocols::rotamer_recovery::RRProtocolMinPack &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack) → str¶: C++: protocols::rotamer_recovery::RRProtocolMinPack::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack) → str¶: C++: protocols::rotamer_recovery::RRProtocolMinPack::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPack, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolMinPack::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolMinPackCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator¶: C++: protocols::rotamer_recovery::RRProtocolMinPackCreator::operator=(const class protocols::rotamer_recovery::RRProtocolMinPackCreator &) –> class protocols::rotamer_recovery::RRProtocolMinPackCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolMinPackCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMinPackCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolMinPackCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover¶: C++: protocols::rotamer_recovery::RRProtocolMover::operator=(const class protocols::rotamer_recovery::RRProtocolMover &) –> class protocols::rotamer_recovery::RRProtocolMover &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover) → str¶: C++: protocols::rotamer_recovery::RRProtocolMover::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover) → str¶: C++: protocols::rotamer_recovery::RRProtocolMover::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMover, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolMover::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolMoverCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator¶: C++: protocols::rotamer_recovery::RRProtocolMoverCreator::operator=(const class protocols::rotamer_recovery::RRProtocolMoverCreator &) –> class protocols::rotamer_recovery::RRProtocolMoverCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolMoverCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolMoverCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolMoverCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamers::operator=(const class protocols::rotamer_recovery::RRProtocolPackRotamers &) –> class protocols::rotamer_recovery::RRProtocolPackRotamers &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers) → str¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamers::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers) → str¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamers::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamers, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamers::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamersCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamersCreator::operator=(const class protocols::rotamer_recovery::RRProtocolPackRotamersCreator &) –> class protocols::rotamer_recovery::RRProtocolPackRotamersCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamersCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolPackRotamersCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolPackRotamersCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::operator=(const class protocols::rotamer_recovery::RRProtocolRTMin &) –> class protocols::rotamer_recovery::RRProtocolRTMin &

get_cartesian(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin) → bool¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::get_cartesian() const –> bool

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin) → str¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::get_name() const –> std::string

get_nonideal(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin) → bool¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::get_nonideal() const –> bool

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin) → str¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

set_cartesian(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin, setting: bool) → None¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::set_cartesian(bool) –> void

set_nonideal(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMin, setting: bool) → None¶: C++: protocols::rotamer_recovery::RRProtocolRTMin::set_nonideal(bool) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolRTMinCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator¶: C++: protocols::rotamer_recovery::RRProtocolRTMinCreator::operator=(const class protocols::rotamer_recovery::RRProtocolRTMinCreator &) –> class protocols::rotamer_recovery::RRProtocolRTMinCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolRTMinCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRTMinCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolRTMinCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure¶

Bases: RRProtocol

static append_attributes(attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::operator=(const class protocols::rotamer_recovery::RRProtocolReferenceStructure &) –> class protocols::rotamer_recovery::RRProtocolReferenceStructure &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure) → str¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure) → str¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

reference_structure(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure, reference_pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::reference_structure(class std::shared_ptr<const class core::pose::Pose>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructure, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, : pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructure::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructureCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructureCreator::operator=(const class protocols::rotamer_recovery::RRProtocolReferenceStructureCreator &) –> class protocols::rotamer_recovery::RRProtocolReferenceStructureCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructureCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolReferenceStructureCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolReferenceStructureCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax¶: C++: protocols::rotamer_recovery::RRProtocolRelax::operator=(const class protocols::rotamer_recovery::RRProtocolRelax &) –> class protocols::rotamer_recovery::RRProtocolRelax &

get_cartesian(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax) → bool¶: C++: protocols::rotamer_recovery::RRProtocolRelax::get_cartesian() const –> bool

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax) → str¶: C++: protocols::rotamer_recovery::RRProtocolRelax::get_name() const –> std::string

get_nonideal(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax) → bool¶: C++: protocols::rotamer_recovery::RRProtocolRelax::get_nonideal() const –> bool

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax) → str¶: C++: protocols::rotamer_recovery::RRProtocolRelax::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolRelax::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

set_cartesian(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax, setting: bool) → None¶: C++: protocols::rotamer_recovery::RRProtocolRelax::set_cartesian(bool) –> void

set_nonideal(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelax, setting: bool) → None¶: C++: protocols::rotamer_recovery::RRProtocolRelax::set_nonideal(bool) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolRelaxCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator¶: C++: protocols::rotamer_recovery::RRProtocolRelaxCreator::operator=(const class protocols::rotamer_recovery::RRProtocolRelaxCreator &) –> class protocols::rotamer_recovery::RRProtocolRelaxCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolRelaxCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRelaxCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolRelaxCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials¶

Bases: RRProtocol

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrials::operator=(const class protocols::rotamer_recovery::RRProtocolRotamerTrials &) –> class protocols::rotamer_recovery::RRProtocolRotamerTrials &

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials) → str¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrials::get_name() const –> std::string

get_parameters(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials) → str¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrials::get_parameters() const –> std::string

parse_attributes_from_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol, dm: pyrosetta.rosetta.basic.datacache.DataMap, tag: pyrosetta.rosetta.utility.tag.Tag) → None¶

As the RRProtocol is being read in

C++: protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag(const class basic::datacache::DataMap &, class std::shared_ptr<const class utility::tag::Tag>) –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrials, comparer: pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer, reporter: protocols::rotamer_recovery::RRReporter, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrials::run(class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>, class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>, const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator¶

Bases: RRProtocolCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator::operator=(const class protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator &) –> class protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator &

create_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator::create_protocol() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocolRotamerTrialsCreator) → str¶: C++: protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶

Bases: pybind11_object

The reporting functionality for the rotamer recovery test

Besides implementing the interface given in the base class RRReporter each RRReporter should have an entry in the conevience RotamerRecovery constructor so its use can be indicated by name.

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RRReporter::operator=(const class protocols::rotamer_recovery::RRReporter &) –> class protocols::rotamer_recovery::RRReporter &

recovery_rate(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter) → float¶: C++: protocols::rotamer_recovery::RRReporter::recovery_rate() const –> double

report_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporter::report_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double, bool) –> void

reset_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter) → None¶: C++: protocols::rotamer_recovery::RRReporter::reset_recovery() –> void

set_comparer_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter, comparer_name: str, comparer_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporter::set_comparer_info(const std::string &, const std::string &) –> void

set_protocol_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter, protocol_name: str, protocol_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporter::set_protocol_info(const std::string &, const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RRReporter::show(std::ostream &) const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter) -> None

C++: protocols::rotamer_recovery::RRReporter::show() const –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator¶

Bases: pybind11_object

The Creator class is responsible for creating a particular mover class.

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRReporterCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator¶: C++: protocols::rotamer_recovery::RRReporterCreator::operator=(const class protocols::rotamer_recovery::RRReporterCreator &) –> class protocols::rotamer_recovery::RRReporterCreator &

create_reporter(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RRReporterCreator::create_reporter() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterCreator) → str¶: C++: protocols::rotamer_recovery::RRReporterCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman¶

Bases: RRReporter

The reporting functionality for the rotamer recovery test in a human readable format.

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman¶: C++: protocols::rotamer_recovery::RRReporterHuman::operator=(const class protocols::rotamer_recovery::RRReporterHuman &) –> class protocols::rotamer_recovery::RRReporterHuman &

recovery_rate(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman) → float¶: C++: protocols::rotamer_recovery::RRReporterHuman::recovery_rate() const –> double

report_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporterHuman::report_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double, bool) –> void

reset_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman) → None¶: C++: protocols::rotamer_recovery::RRReporterHuman::reset_recovery() –> void

set_comparer_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman, comparer_name: str, comparer_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporterHuman::set_comparer_info(const std::string &, const std::string &) –> void

set_protocol_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman, protocol_name: str, protocol_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporterHuman::set_protocol_info(const std::string &, const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RRReporterHuman::show(std::ostream &) const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHuman) -> None

C++: protocols::rotamer_recovery::RRReporterHuman::show() const –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator¶

Bases: RRReporterCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRReporterHumanCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator¶: C++: protocols::rotamer_recovery::RRReporterHumanCreator::operator=(const class protocols::rotamer_recovery::RRReporterHumanCreator &) –> class protocols::rotamer_recovery::RRReporterHumanCreator &

create_reporter(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RRReporterHumanCreator::create_reporter() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterHumanCreator) → str¶: C++: protocols::rotamer_recovery::RRReporterHumanCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite¶

Bases: RRReporter

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite¶: C++: protocols::rotamer_recovery::RRReporterSQLite::operator=(const class protocols::rotamer_recovery::RRReporterSQLite &) –> class protocols::rotamer_recovery::RRReporterSQLite &

db_session(*args, **kwargs)¶

Overloaded function.

db_session(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, db_session: pyrosetta.rosetta.utility.sql_database.session) -> None

C++: protocols::rotamer_recovery::RRReporterSQLite::db_session(class std::shared_ptr<class utility::sql_database::session>) –> void

db_session(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) -> pyrosetta.rosetta.utility.sql_database.session

C++: protocols::rotamer_recovery::RRReporterSQLite::db_session() –> class std::shared_ptr<class utility::sql_database::session>

get_output_level(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) → pyrosetta.rosetta.protocols.rotamer_recovery.OutputLevel¶: C++: protocols::rotamer_recovery::RRReporterSQLite::get_output_level() const –> enum protocols::rotamer_recovery::OutputLevel

get_struct_id1(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) → int¶: C++: protocols::rotamer_recovery::RRReporterSQLite::get_struct_id1() const –> unsigned long

recovery_rate(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) → float¶: C++: protocols::rotamer_recovery::RRReporterSQLite::recovery_rate() const –> double

report_predicted_features(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, struct_id1: int, res1: pyrosetta.rosetta.core.conformation.Residue, predicted_pose: pyrosetta.rosetta.core.pose.Pose, predicted_res: pyrosetta.rosetta.core.conformation.Residue) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::report_predicted_features(unsigned long, const class core::conformation::Residue &, const class core::pose::Pose &, const class core::conformation::Residue &) –> void

report_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::report_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double, bool) –> void

report_rotamer_recovery_features(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, struct_id1: int, res1: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::report_rotamer_recovery_features(unsigned long, const class core::conformation::Residue &, double, bool) –> void

report_rotamer_recovery_full(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::report_rotamer_recovery_full(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double, bool) –> void

reset_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::reset_recovery() –> void

set_comparer_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, comparer_name: str, comparer_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::set_comparer_info(const std::string &, const std::string &) –> void

set_output_level(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, output_level: pyrosetta.rosetta.protocols.rotamer_recovery.OutputLevel) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::set_output_level(enum protocols::rotamer_recovery::OutputLevel) –> void

set_predicted_report_to_db(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, report_to_db: pyrosetta.rosetta.protocols.features.ReportToDB) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::set_predicted_report_to_db(class std::shared_ptr<class protocols::features::ReportToDB>) –> void

set_protocol_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, protocol_name: str, protocol_params: str) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::set_protocol_info(const std::string &, const std::string &) –> void

set_struct_id1(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, struct_id1: int) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLite::set_struct_id1(const unsigned long) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RRReporterSQLite::show(std::ostream &) const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite) -> None

C++: protocols::rotamer_recovery::RRReporterSQLite::show() const –> void

write_schema_to_db(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLite, db_session: pyrosetta.rosetta.utility.sql_database.session) → None¶

generate the table schemas and write them to the database

C++: protocols::rotamer_recovery::RRReporterSQLite::write_schema_to_db(class std::shared_ptr<class utility::sql_database::session>) const –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator¶

Bases: RRReporterCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRReporterSQLiteCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator¶: C++: protocols::rotamer_recovery::RRReporterSQLiteCreator::operator=(const class protocols::rotamer_recovery::RRReporterSQLiteCreator &) –> class protocols::rotamer_recovery::RRReporterSQLiteCreator &

create_reporter(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RRReporterSQLiteCreator::create_reporter() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSQLiteCreator) → str¶: C++: protocols::rotamer_recovery::RRReporterSQLiteCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple¶

Bases: RRReporter

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple¶: C++: protocols::rotamer_recovery::RRReporterSimple::operator=(const class protocols::rotamer_recovery::RRReporterSimple &) –> class protocols::rotamer_recovery::RRReporterSimple &

recovery_rate(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple) → float¶: C++: protocols::rotamer_recovery::RRReporterSimple::recovery_rate() const –> double

report_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple, pose1: pyrosetta.rosetta.core.pose.Pose, pose2: pyrosetta.rosetta.core.pose.Pose, res1: pyrosetta.rosetta.core.conformation.Residue, res2: pyrosetta.rosetta.core.conformation.Residue, score: float, recovered: bool) → None¶: C++: protocols::rotamer_recovery::RRReporterSimple::report_rotamer_recovery(const class core::pose::Pose &, const class core::pose::Pose &, const class core::conformation::Residue &, const class core::conformation::Residue &, double, bool) –> void

reset_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple) → None¶: C++: protocols::rotamer_recovery::RRReporterSimple::reset_recovery() –> void

set_comparer_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple, : str, : str) → None¶: C++: protocols::rotamer_recovery::RRReporterSimple::set_comparer_info(const std::string &, const std::string &) –> void

set_protocol_info(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple, : str, : str) → None¶: C++: protocols::rotamer_recovery::RRReporterSimple::set_protocol_info(const std::string &, const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RRReporterSimple::show(std::ostream &) const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimple) -> None

C++: protocols::rotamer_recovery::RRReporterSimple::show() const –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator¶

Bases: RRReporterCreator

append_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RRReporterSimpleCreator::append_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator¶: C++: protocols::rotamer_recovery::RRReporterSimpleCreator::operator=(const class protocols::rotamer_recovery::RRReporterSimpleCreator &) –> class protocols::rotamer_recovery::RRReporterSimpleCreator &

create_reporter(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RRReporterSimpleCreator::create_reporter() const –> class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>

type_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RRReporterSimpleCreator) → str¶: C++: protocols::rotamer_recovery::RRReporterSimpleCreator::type_name() const –> std::string

class pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery¶

Bases: pybind11_object

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery, : pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery¶: C++: protocols::rotamer_recovery::RotamerRecovery::operator=(const class protocols::rotamer_recovery::RotamerRecovery &) –> class protocols::rotamer_recovery::RotamerRecovery &

get_ignore_unrecognized_res(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → bool¶: C++: protocols::rotamer_recovery::RotamerRecovery::get_ignore_unrecognized_res() –> bool

init_rotamer_recovery_with_options(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery, rotamer_recovery: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → None¶: C++: protocols::rotamer_recovery::RotamerRecovery::init_rotamer_recovery_with_options(class protocols::rotamer_recovery::RotamerRecovery &) –> void

init_with_options(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → None¶: C++: protocols::rotamer_recovery::RotamerRecovery::init_with_options() –> void

recovery_rate(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → float¶: C++: protocols::rotamer_recovery::RotamerRecovery::recovery_rate() const –> double

register_options(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → None¶: C++: protocols::rotamer_recovery::RotamerRecovery::register_options() const –> void

reset_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) → None¶: C++: protocols::rotamer_recovery::RotamerRecovery::reset_recovery() –> void

run(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery, pose: pyrosetta.rosetta.core.pose.Pose, score_function: pyrosetta.rosetta.core.scoring.ScoreFunction, packer_task: pyrosetta.rosetta.core.pack.task.PackerTask) → float¶: C++: protocols::rotamer_recovery::RotamerRecovery::run(const class core::pose::Pose &, const class core::scoring::ScoreFunction &, const class core::pack::task::PackerTask &) –> double

set_ignore_unrecognized_res(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery, ignore_unrecognized_res: bool) → None¶: C++: protocols::rotamer_recovery::RotamerRecovery::set_ignore_unrecognized_res(const bool) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RotamerRecovery::show(std::ostream &) const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery) -> None

C++: protocols::rotamer_recovery::RotamerRecovery::show() –> void

class pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory¶

Bases: SingletonBase_protocols_rotamer_recovery_RotamerRecoveryFactory_t

Create Rotamer_Recovery Reporters

append_comparer_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::append_comparer_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

append_protocol_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::append_protocol_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

append_reporter_attributes(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, attlist: pyrosetta.rosetta.std.list_utility_tag_XMLSchemaAttribute_t) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::append_reporter_attributes(class std::list<class utility::tag::XMLSchemaAttribute, class std::allocator<class utility::tag::XMLSchemaAttribute> > &) const –> void

static get_instance() → protocols::rotamer_recovery::RotamerRecoveryFactory¶: C++: utility::SingletonBase<protocols::rotamer_recovery::RotamerRecoveryFactory>::get_instance() –> class protocols::rotamer_recovery::RotamerRecoveryFactory *

get_rotamer_recovery(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, protocol: str, comparer: str, reporter: str) → pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecovery¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::get_rotamer_recovery(const std::string &, const std::string &, const std::string &) –> class std::shared_ptr<class protocols::rotamer_recovery::RotamerRecovery>

get_rotamer_recovery_comparer(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, type_name: str) → pyrosetta.rosetta.protocols.rotamer_recovery.RRComparer¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::get_rotamer_recovery_comparer(const std::string &) –> class std::shared_ptr<class protocols::rotamer_recovery::RRComparer>

get_rotamer_recovery_protocol(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, type_name: str) → pyrosetta.rosetta.protocols.rotamer_recovery.RRProtocol¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::get_rotamer_recovery_protocol(const std::string &) –> class std::shared_ptr<class protocols::rotamer_recovery::RRProtocol>

get_rotamer_recovery_reporter(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryFactory, type_name: str) → pyrosetta.rosetta.protocols.rotamer_recovery.RRReporter¶: C++: protocols::rotamer_recovery::RotamerRecoveryFactory::get_rotamer_recovery_reporter(const std::string &) –> class std::shared_ptr<class protocols::rotamer_recovery::RRReporter>

class pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover¶

Bases: Mover

apply(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover, : pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::operator=(const class protocols::rotamer_recovery::RotamerRecoveryMover &) –> class protocols::rotamer_recovery::RotamerRecoveryMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → pyrosetta.rosetta.protocols.moves.Mover¶

make a copy

C++: protocols::rotamer_recovery::RotamerRecoveryMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → pyrosetta.rosetta.protocols.moves.Mover¶

make a copy but use default constructor

C++: protocols::rotamer_recovery::RotamerRecoveryMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) → protocols::jobdist::BasicJob¶: C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶

A tag is a unique identifier used to identify structures produced: by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.MoverStatus¶

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → str¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.core.pose.Pose¶: C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t¶: C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) → str¶: C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) → pyrosetta.rosetta.std.list_std_string_t¶

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) → float¶: C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() → str¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::mover_name() –> std::string

static name() → str¶: C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

register_options(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryMover::register_options() const –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → bool¶

this function informs the job distributor (august 08 vintage) whether this object needs to be freshly regenerated on each use.

C++: protocols::rotamer_recovery::RotamerRecoveryMover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) → bool¶

this function informs the job distributor (august 08 vintage) whether this object needs to be regenerated when the input pose is about to change (for example, if the mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::rotamer_recovery::RotamerRecoveryMover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) → None¶

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

score_function(*args, **kwargs)¶

Overloaded function.

score_function(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) -> pyrosetta.rosetta.core.scoring.ScoreFunction

C++: protocols::rotamer_recovery::RotamerRecoveryMover::score_function() –> class std::shared_ptr<class core::scoring::ScoreFunction>

score_function(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover, : pyrosetta.rosetta.core.scoring.ScoreFunction) -> None

C++: protocols::rotamer_recovery::RotamerRecoveryMover::score_function(class std::shared_ptr<class core::scoring::ScoreFunction>) –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) → None¶: C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) → None¶: C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) → None¶

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)¶

Overloaded function.

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover) -> None

C++: protocols::rotamer_recovery::RotamerRecoveryMover::show() const –> void

show(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMover, out: pyrosetta.rosetta.std.ostream) -> None

C++: protocols::rotamer_recovery::RotamerRecoveryMover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) → None¶

: Unit test support function. Apply one move to a given pose.: Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)¶

Overloaded function.

type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator¶

Bases: MoverCreator

assign(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator, : pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator) → pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator¶: C++: protocols::rotamer_recovery::RotamerRecoveryMoverCreator::operator=(const class protocols::rotamer_recovery::RotamerRecoveryMoverCreator &) –> class protocols::rotamer_recovery::RotamerRecoveryMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator) → pyrosetta.rosetta.protocols.moves.Mover¶: C++: protocols::rotamer_recovery::RotamerRecoveryMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator) → str¶: C++: protocols::rotamer_recovery::RotamerRecoveryMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.rotamer_recovery.RotamerRecoveryMoverCreator, xsd: pyrosetta.rosetta.utility.tag.XMLSchemaDefinition) → None¶: C++: protocols::rotamer_recovery::RotamerRecoveryMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void