unfolded_state_energy_calculator

Bindings for protocols::unfolded_state_energy_calculator namespace

class pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor

Bases: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor

add_batch(*args, **kwargs)

Overloaded function.

  1. add_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, : str) -> None

  2. add_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, : str, id: int) -> None

add a new batch ( name will be interpreted as flag_file )

C++: protocols::jd2::JobDistributor::add_batch(const std::string &, unsigned long) –> void

add_unfolded_energy_data(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor, tlc: str, scores: pyrosetta.rosetta.core.scoring.EMapVector) None

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor::add_unfolded_energy_data(std::string, const class core::scoring::EMapVector &) –> void

assign(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor, : pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor) pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor::operator=(const class protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor &) –> class protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor &

current_batch_id(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

what is the current batch number ? — refers to position in batches_

C++: protocols::jd2::JobDistributor::current_batch_id() const –> unsigned long

current_job(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) protocols::jd2::Job
Movers may ask their controlling job distributor for information about the current job.

They may also write information to this job for later output, though this use is now discouraged as the addition of the MultiplePoseMover now means that a single job may include several separate trajectories.

C++: protocols::jd2::JobDistributor::current_job() const –> class std::shared_ptr<class protocols::jd2::Job>

current_job_finished(self: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor) None

C++: protocols::jd2::FileSystemJobDistributor::current_job_finished() –> void

current_job_id(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

integer access - which job are we on?

C++: protocols::jd2::JobDistributor::current_job_id() const –> unsigned long

current_output_name(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) str

Movers may ask their controlling job distributor for the output name as defined by the Job and JobOutputter.

C++: protocols::jd2::JobDistributor::current_output_name() const –> std::string

get_current_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) str

what is the current batch ? — name refers to the flag-file used for this batch

C++: protocols::jd2::JobDistributor::get_current_batch() const –> std::string

static get_instance() pyrosetta.rosetta.protocols.jd2.JobDistributor

C++: protocols::jd2::JobDistributor::get_instance() –> class protocols::jd2::JobDistributor *

get_new_job_id(self: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor) int

C++: protocols::jd2::FileSystemJobDistributor::get_new_job_id() –> unsigned long

go(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor, mover: pyrosetta.rosetta.protocols.moves.Mover) None

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor::go(class std::shared_ptr<class protocols::moves::Mover>) –> void

static has_been_instantiated() bool

Has the job distributor been instantiated?

Returns true for yes and false for no.

Vikram K. Mulligan (vmullig.edu).

C++: protocols::jd2::JobDistributor::has_been_instantiated() –> bool

job_inputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobInputter

JobInputter access

C++: protocols::jd2::JobDistributor::job_inputter() const –> class std::shared_ptr<class protocols::jd2::JobInputter>

job_inputter_input_source(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobInputterInputSource.Enum

The input source for the current JobInputter.

C++: protocols::jd2::JobDistributor::job_inputter_input_source() const –> enum protocols::jd2::JobInputterInputSource::Enum

job_outputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobOutputter

Movers (or derived classes) may ask for the JobOutputter

C++: protocols::jd2::JobDistributor::job_outputter() const –> class std::shared_ptr<class protocols::jd2::JobOutputter>

mark_current_job_id_for_repetition(self: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor) None

C++: protocols::jd2::FileSystemJobDistributor::mark_current_job_id_for_repetition() –> void

mpi_finalize(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, finalize: bool) None

should the go() function call MPI_finalize()? It probably should, this is true by default.

C++: protocols::jd2::JobDistributor::mpi_finalize(bool) –> void

remove_bad_inputs_from_job_list(self: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor) None

C++: protocols::jd2::FileSystemJobDistributor::remove_bad_inputs_from_job_list() –> void

restart(self: pyrosetta.rosetta.protocols.jd2.FileSystemJobDistributor) None

C++: protocols::jd2::FileSystemJobDistributor::restart() –> void

set_energy_terms(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorJobDistributor, weights: pyrosetta.rosetta.core.scoring.EMapVector) None

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor::set_energy_terms(const class core::scoring::EMapVector &) –> void

set_job_inputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, new_job_inputter: pyrosetta.rosetta.protocols.jd2.JobInputter) None
Set the JobInputter and reset the Job list – this is not something you want to do

after go() has been called, but before it has returned.

C++: protocols::jd2::JobDistributor::set_job_inputter(class std::shared_ptr<class protocols::jd2::JobInputter>) –> void

set_job_outputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, new_job_outputter: pyrosetta.rosetta.protocols.jd2.JobOutputter) None

Movers (or derived classes) may ask for the JobOutputter

C++: protocols::jd2::JobDistributor::set_job_outputter(const class std::shared_ptr<class protocols::jd2::JobOutputter> &) –> void

total_nr_jobs(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

C++: protocols::jd2::JobDistributor::total_nr_jobs() const –> unsigned long

class pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor

Bases: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor

add_batch(*args, **kwargs)

Overloaded function.

  1. add_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, : str) -> None

  2. add_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, : str, id: int) -> None

add a new batch ( name will be interpreted as flag_file )

C++: protocols::jd2::JobDistributor::add_batch(const std::string &, unsigned long) –> void

add_unfolded_energy_data(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor, tlc: str, scores: pyrosetta.rosetta.core.scoring.EMapVector) None

dummy for master/slave version

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor::add_unfolded_energy_data(std::string, const class core::scoring::EMapVector &) –> void

assign(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor, : pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor) pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor::operator=(const class protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor &) –> class protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor &

current_batch_id(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

what is the current batch number ? — refers to position in batches_

C++: protocols::jd2::JobDistributor::current_batch_id() const –> unsigned long

current_job(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) protocols::jd2::Job
Movers may ask their controlling job distributor for information about the current job.

They may also write information to this job for later output, though this use is now discouraged as the addition of the MultiplePoseMover now means that a single job may include several separate trajectories.

C++: protocols::jd2::JobDistributor::current_job() const –> class std::shared_ptr<class protocols::jd2::Job>

current_job_id(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

integer access - which job are we on?

C++: protocols::jd2::JobDistributor::current_job_id() const –> unsigned long

current_output_name(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) str

Movers may ask their controlling job distributor for the output name as defined by the Job and JobOutputter.

C++: protocols::jd2::JobDistributor::current_output_name() const –> std::string

get_current_batch(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) str

what is the current batch ? — name refers to the flag-file used for this batch

C++: protocols::jd2::JobDistributor::get_current_batch() const –> std::string

static get_instance() pyrosetta.rosetta.protocols.jd2.JobDistributor

C++: protocols::jd2::JobDistributor::get_instance() –> class protocols::jd2::JobDistributor *

get_new_job_id(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor) int

dummy for master/slave version

C++: protocols::jd2::MPIWorkPoolJobDistributor::get_new_job_id() –> unsigned long

go(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor, mover: pyrosetta.rosetta.protocols.moves.Mover) None

dummy for master/slave version

C++: protocols::jd2::MPIWorkPoolJobDistributor::go(class std::shared_ptr<class protocols::moves::Mover>) –> void

static has_been_instantiated() bool

Has the job distributor been instantiated?

Returns true for yes and false for no.

Vikram K. Mulligan (vmullig.edu).

C++: protocols::jd2::JobDistributor::has_been_instantiated() –> bool

job_failed(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor, pose: pyrosetta.rosetta.core.pose.Pose, will_retry: bool) None

Called if job fails.

C++: protocols::jd2::MPIWorkPoolJobDistributor::job_failed(class core::pose::Pose &, bool) –> void

job_inputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobInputter

JobInputter access

C++: protocols::jd2::JobDistributor::job_inputter() const –> class std::shared_ptr<class protocols::jd2::JobInputter>

job_inputter_input_source(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobInputterInputSource.Enum

The input source for the current JobInputter.

C++: protocols::jd2::JobDistributor::job_inputter_input_source() const –> enum protocols::jd2::JobInputterInputSource::Enum

job_outputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) pyrosetta.rosetta.protocols.jd2.JobOutputter

Movers (or derived classes) may ask for the JobOutputter

C++: protocols::jd2::JobDistributor::job_outputter() const –> class std::shared_ptr<class protocols::jd2::JobOutputter>

job_succeeded(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor, pose: pyrosetta.rosetta.core.pose.Pose, run_time: float, tag: str) None

dummy for master/slave version

C++: protocols::jd2::MPIWorkPoolJobDistributor::job_succeeded(class core::pose::Pose &, double, const std::string &) –> void

mark_current_job_id_for_repetition(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor) None

dummy for master/slave version

C++: protocols::jd2::MPIWorkPoolJobDistributor::mark_current_job_id_for_repetition() –> void

mpi_finalize(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor, finalize: bool) None

should the go() function call MPI_finalize()? It probably should, this is true by default.

C++: protocols::jd2::MPIWorkPoolJobDistributor::mpi_finalize(bool) –> void

remove_bad_inputs_from_job_list(self: pyrosetta.rosetta.protocols.jd2.MPIWorkPoolJobDistributor) None

dummy for master/slave version

C++: protocols::jd2::MPIWorkPoolJobDistributor::remove_bad_inputs_from_job_list() –> void

restart(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) None

C++: protocols::jd2::JobDistributor::restart() –> void

set_energy_terms(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor, weights: pyrosetta.rosetta.core.scoring.EMapVector) None

dummy for master/slave version

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor::set_energy_terms(const class core::scoring::EMapVector &) –> void

set_job_inputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, new_job_inputter: pyrosetta.rosetta.protocols.jd2.JobInputter) None
Set the JobInputter and reset the Job list – this is not something you want to do

after go() has been called, but before it has returned.

C++: protocols::jd2::JobDistributor::set_job_inputter(class std::shared_ptr<class protocols::jd2::JobInputter>) –> void

set_job_outputter(self: pyrosetta.rosetta.protocols.jd2.JobDistributor, new_job_outputter: pyrosetta.rosetta.protocols.jd2.JobOutputter) None

Movers (or derived classes) may ask for the JobOutputter

C++: protocols::jd2::JobDistributor::set_job_outputter(const class std::shared_ptr<class protocols::jd2::JobOutputter> &) –> void

total_nr_jobs(self: pyrosetta.rosetta.protocols.jd2.JobDistributor) int

C++: protocols::jd2::JobDistributor::total_nr_jobs() const –> unsigned long

class pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::operator=(const class protocols::moves::Mover &) –> class protocols::moves::Mover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Return a clone of the Mover object.

C++: protocols::moves::Mover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover) str

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.moves.Mover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

Called by MoverFactory when constructing new Movers. Takes care of the specific mover’s parsing.

C++: protocols::moves::Mover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover) bool

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.UnfoldedStateEnergyCalculatorMover) bool

C++: protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.calc_all_averages(unweighted_energies: pyrosetta.rosetta.utility.vector1_core_scoring_EMapVector, energy_terms: pyrosetta.rosetta.core.scoring.EMapVector) None

C++: protocols::unfolded_state_energy_calculator::calc_all_averages(class utility::vector1<class core::scoring::EMapVector, class std::allocator<class core::scoring::EMapVector> >, class core::scoring::EMapVector) –> void

pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.calc_vector_boltzmann(data: pyrosetta.rosetta.utility.vector1_double) float

C++: protocols::unfolded_state_energy_calculator::calc_vector_boltzmann(const class utility::vector1<double, class std::allocator<double> > &) –> double

pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.calc_vector_mean(data: pyrosetta.rosetta.utility.vector1_double) float

C++: protocols::unfolded_state_energy_calculator::calc_vector_mean(const class utility::vector1<double, class std::allocator<double> > &) –> double

pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.calc_vector_median(data: pyrosetta.rosetta.utility.vector1_double) float

C++: protocols::unfolded_state_energy_calculator::calc_vector_median(const class utility::vector1<double, class std::allocator<double> > &) –> double

pyrosetta.rosetta.protocols.unfolded_state_energy_calculator.calc_vector_mode(data: pyrosetta.rosetta.utility.vector1_double) float

C++: protocols::unfolded_state_energy_calculator::calc_vector_mode(const class utility::vector1<double, class std::allocator<double> > &) –> double