cryst

Bindings for protocols::cryst namespace

class pyrosetta.rosetta.protocols.cryst.CheshireCell

Bases: pybind11_builtins.pybind11_object

A struct used by spacegroup.cc and its helper functions.

assign(self: pyrosetta.rosetta.protocols.cryst.CheshireCell, : pyrosetta.rosetta.protocols.cryst.CheshireCell) pyrosetta.rosetta.protocols.cryst.CheshireCell

C++: protocols::cryst::CheshireCell::operator=(const struct protocols::cryst::CheshireCell &) –> struct protocols::cryst::CheshireCell &

property high
property low
class pyrosetta.rosetta.protocols.cryst.CrystRMS

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.CrystRMS, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::CrystRMS::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.CrystRMS, : pyrosetta.rosetta.protocols.cryst.CrystRMS) pyrosetta.rosetta.protocols.cryst.CrystRMS

C++: protocols::cryst::CrystRMS::operator=(const class protocols::cryst::CrystRMS &) –> class protocols::cryst::CrystRMS &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.CrystRMS) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::CrystRMS::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.cryst.CrystRMS) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::CrystRMS::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.CrystRMS) str

C++: protocols::cryst::CrystRMS::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::CrystRMS::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.CrystRMS, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::CrystRMS::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::CrystRMS::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.CrystRMSCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.CrystRMSCreator, : pyrosetta.rosetta.protocols.cryst.CrystRMSCreator) pyrosetta.rosetta.protocols.cryst.CrystRMSCreator

C++: protocols::cryst::CrystRMSCreator::operator=(const class protocols::cryst::CrystRMSCreator &) –> class protocols::cryst::CrystRMSCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.CrystRMSCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::CrystRMSCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.CrystRMSCreator) str

C++: protocols::cryst::CrystRMSCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.CrystRMSCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::CrystRMSCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.DockLatticeMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, : pyrosetta.rosetta.protocols.cryst.DockLatticeMover) pyrosetta.rosetta.protocols.cryst.DockLatticeMover

C++: protocols::cryst::DockLatticeMover::operator=(const class protocols::cryst::DockLatticeMover &) –> class protocols::cryst::DockLatticeMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::DockLatticeMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::DockLatticeMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover) str

C++: protocols::cryst::DockLatticeMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

initialize(*args, **kwargs)

Overloaded function.

  1. initialize(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) -> None

  2. initialize(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose, contact_dist_scale: float) -> None

C++: protocols::cryst::DockLatticeMover::initialize(class core::pose::Pose &, double) –> void

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::DockLatticeMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::DockLatticeMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

perturb_chis(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::perturb_chis(class core::pose::Pose &) –> void

perturb_lattice(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::perturb_lattice(class core::pose::Pose &) –> void

perturb_rb(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::perturb_rb(class core::pose::Pose &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::DockLatticeMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

randomize_chis(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::randomize_chis(class core::pose::Pose &) –> void

regenerate_lattice(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) bool

C++: protocols::cryst::DockLatticeMover::regenerate_lattice(class core::pose::Pose &) –> bool

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

repack(*args, **kwargs)

Overloaded function.

  1. repack(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) -> None

  2. repack(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose, rottrials: bool) -> None

C++: protocols::cryst::DockLatticeMover::repack(class core::pose::Pose &, bool) –> void

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_defaults(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover) None

C++: protocols::cryst::DockLatticeMover::set_defaults() –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_ncycles(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, ncycles_in: int) None

C++: protocols::cryst::DockLatticeMover::set_ncycles(unsigned long) –> void

set_rot_mag(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, rot_mag_in: float) None

C++: protocols::cryst::DockLatticeMover::set_rot_mag(double) –> void

set_scorefunction(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, sf_new: pyrosetta.rosetta.core.scoring.ScoreFunction) None

C++: protocols::cryst::DockLatticeMover::set_scorefunction(class std::shared_ptr<class core::scoring::ScoreFunction>) –> void

set_temp(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, val: float) None

C++: protocols::cryst::DockLatticeMover::set_temp(double) –> void

set_trans_mag(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, trans_mag_in: float) None

C++: protocols::cryst::DockLatticeMover::set_trans_mag(double) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

slide_lattice(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::DockLatticeMover::slide_lattice(class core::pose::Pose &) –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator, : pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator) pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator

C++: protocols::cryst::DockLatticeMoverCreator::operator=(const class protocols::cryst::DockLatticeMoverCreator &) –> class protocols::cryst::DockLatticeMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::DockLatticeMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator) str

C++: protocols::cryst::DockLatticeMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.DockLatticeMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::DockLatticeMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.FitBfactorsMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::FitBfactorsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMover, : pyrosetta.rosetta.protocols.cryst.FitBfactorsMover) pyrosetta.rosetta.protocols.cryst.FitBfactorsMover

C++: protocols::cryst::FitBfactorsMover::operator=(const class protocols::cryst::FitBfactorsMover &) –> class protocols::cryst::FitBfactorsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::FitBfactorsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMover) str

C++: protocols::cryst::FitBfactorsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::FitBfactorsMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::FitBfactorsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::FitBfactorsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator, : pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator) pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator

C++: protocols::cryst::FitBfactorsMoverCreator::operator=(const class protocols::cryst::FitBfactorsMoverCreator &) –> class protocols::cryst::FitBfactorsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::FitBfactorsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator) str

C++: protocols::cryst::FitBfactorsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.FitBfactorsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::FitBfactorsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

This class loads a density map into global data. Each apply will regenerate this data and force a reload of the data by default.

apply(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::LoadDensityMapMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, : pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover

C++: protocols::cryst::LoadDensityMapMover::operator=(const class protocols::cryst::LoadDensityMapMover &) –> class protocols::cryst::LoadDensityMapMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::LoadDensityMapMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_mapfile(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) str

Get the mapfile path set for this mover.

C++: protocols::cryst::LoadDensityMapMover::get_mapfile() –> std::string

get_name(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) str

C++: protocols::cryst::LoadDensityMapMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_sc_scale(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) float

Get the sc_scale set for this mover.

C++: protocols::cryst::LoadDensityMapMover::get_sc_scale() –> double

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

get_window(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover) int

Get the window set for this mover.

C++: protocols::cryst::LoadDensityMapMover::get_window() –> unsigned long

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::LoadDensityMapMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::LoadDensityMapMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::LoadDensityMapMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_mapfile(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, mapfile: str) None

Set a mapfile to be loaded

C++: protocols::cryst::LoadDensityMapMover::set_mapfile(const std::string &) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_sc_scale(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, sc_scale: float) None

Set sidechain scaling in density map to this factor (default 1.0)

C++: protocols::cryst::LoadDensityMapMover::set_sc_scale(const double) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_window(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMover, window: int) None

Set window in the density map to this value (default 3). Used if using window scoring.

C++: protocols::cryst::LoadDensityMapMover::set_window(const unsigned long) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator, : pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator) pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator

C++: protocols::cryst::LoadDensityMapMoverCreator::operator=(const class protocols::cryst::LoadDensityMapMoverCreator &) –> class protocols::cryst::LoadDensityMapMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::LoadDensityMapMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator) str

C++: protocols::cryst::LoadDensityMapMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.LoadDensityMapMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::LoadDensityMapMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.MakeLatticeMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

add_monomers_to_lattice(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, monomer_pose: pyrosetta.rosetta.core.pose.Pose, pose: pyrosetta.rosetta.core.pose.Pose, monomer_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, monomer_jumps: pyrosetta.rosetta.utility.vector1_unsigned_long, rootres: int) None

C++: protocols::cryst::MakeLatticeMover::add_monomers_to_lattice(const class core::pose::Pose &, class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long) –> void

apply(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::MakeLatticeMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, : pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) pyrosetta.rosetta.protocols.cryst.MakeLatticeMover

C++: protocols::cryst::MakeLatticeMover::operator=(const class protocols::cryst::MakeLatticeMover &) –> class protocols::cryst::MakeLatticeMover &

build_lattice_of_virtuals(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose, EXTEND: pyrosetta.rosetta.numeric.xyzVector_int_t, Ajumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Bjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Cjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, subunit_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, basesubunit: int) None

C++: protocols::cryst::MakeLatticeMover::build_lattice_of_virtuals(class core::pose::Pose &, class numeric::xyzVector<int>, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLatticeMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

contact_dist(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, setting: float) None

C++: protocols::cryst::MakeLatticeMover::contact_dist(const double) –> void

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

detect_connecting_subunits(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, monomer_pose: pyrosetta.rosetta.core.pose.Pose, pose: pyrosetta.rosetta.core.pose.Pose, monomer_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, basesubunit: int) None

C++: protocols::cryst::MakeLatticeMover::detect_connecting_subunits(const class core::pose::Pose &, const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLatticeMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

getRT(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, idx: int, R: pyrosetta.rosetta.numeric.xyzMatrix_double_t, T: pyrosetta.rosetta.numeric.xyzVector_double_t) None

C++: protocols::cryst::MakeLatticeMover::getRT(int, class numeric::xyzMatrix<double> &, class numeric::xyzVector<double> &) –> void

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) str

C++: protocols::cryst::MakeLatticeMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::MakeLatticeMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::MakeLatticeMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

place_near_origin(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose) int

C++: protocols::cryst::MakeLatticeMover::place_near_origin(class core::pose::Pose &) –> unsigned long

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::MakeLatticeMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_refinable_lattice(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, val: bool) None

C++: protocols::cryst::MakeLatticeMover::set_refinable_lattice(bool) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

set_validate_lattice(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, val: bool) None

C++: protocols::cryst::MakeLatticeMover::set_validate_lattice(bool) –> void

setup_xtal_symminfo(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, pose: pyrosetta.rosetta.core.pose.Pose, num_monomers: int, num_virtuals: int, base_monomer: int, nres_monomer: int, Ajumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Bjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Cjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, monomer_jumps: pyrosetta.rosetta.utility.vector1_unsigned_long, symminfo: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo) None

C++: protocols::cryst::MakeLatticeMover::setup_xtal_symminfo(class core::pose::Pose &, const unsigned long, const unsigned long, const unsigned long, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class core::conformation::symmetry::SymmetryInfo &) –> void

sg(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) pyrosetta.rosetta.protocols.cryst.Spacegroup

C++: protocols::cryst::MakeLatticeMover::sg() const –> const class protocols::cryst::Spacegroup &

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

spacegroup(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover, sg_in: pyrosetta.rosetta.protocols.cryst.Spacegroup) None

C++: protocols::cryst::MakeLatticeMover::spacegroup(const class protocols::cryst::Spacegroup &) –> void

symmops(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMover) pyrosetta.rosetta.utility.vector1_core_kinematics_RT

C++: protocols::cryst::MakeLatticeMover::symmops() const –> const class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator, : pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator) pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator

C++: protocols::cryst::MakeLatticeMoverCreator::operator=(const class protocols::cryst::MakeLatticeMoverCreator &) –> class protocols::cryst::MakeLatticeMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLatticeMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator) str

C++: protocols::cryst::MakeLatticeMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.MakeLatticeMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::MakeLatticeMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.MakeLayerMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

add_monomers_to_layer(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, monomer_pose: pyrosetta.rosetta.core.pose.Pose, pose: pyrosetta.rosetta.core.pose.Pose, monomer_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, monomer_jumps: pyrosetta.rosetta.utility.vector1_unsigned_long, rootres: int) None

C++: protocols::cryst::MakeLayerMover::add_monomers_to_layer(const class core::pose::Pose &, class core::pose::Pose &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long) –> void

apply(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::MakeLayerMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, : pyrosetta.rosetta.protocols.cryst.MakeLayerMover) pyrosetta.rosetta.protocols.cryst.MakeLayerMover

C++: protocols::cryst::MakeLayerMover::operator=(const class protocols::cryst::MakeLayerMover &) –> class protocols::cryst::MakeLayerMover &

build_layer_of_virtuals(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, pose: pyrosetta.rosetta.core.pose.Pose, Ajumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Bjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, subunit_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, basesubunit: int) None

C++: protocols::cryst::MakeLayerMover::build_layer_of_virtuals(class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long &) –> void

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLayerMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

contact_dist(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, setting: float) None

C++: protocols::cryst::MakeLayerMover::contact_dist(const double) –> void

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

detect_connecting_subunits(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, monomer_pose: pyrosetta.rosetta.core.pose.Pose, pose: pyrosetta.rosetta.core.pose.Pose, monomer_anchors: pyrosetta.rosetta.utility.vector1_unsigned_long, basesubunit: int) None

C++: protocols::cryst::MakeLayerMover::detect_connecting_subunits(const class core::pose::Pose &, const class core::pose::Pose &, class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, unsigned long &) –> void

fresh_instance(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLayerMover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover) str

C++: protocols::cryst::MakeLayerMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::MakeLayerMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::MakeLayerMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

place_near_origin(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, pose: pyrosetta.rosetta.core.pose.Pose) int

C++: protocols::cryst::MakeLayerMover::place_near_origin(class core::pose::Pose &) –> unsigned long

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::MakeLayerMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_moving_lattice(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, val: bool) None

C++: protocols::cryst::MakeLayerMover::set_moving_lattice(bool) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

setup_xtal_symminfo(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, pose: pyrosetta.rosetta.core.pose.Pose, num_monomers: int, num_virtuals: int, base_monomer: int, nres_monomer: int, Ajumps: pyrosetta.rosetta.utility.vector1_unsigned_long, Bjumps: pyrosetta.rosetta.utility.vector1_unsigned_long, monomer_jumps: pyrosetta.rosetta.utility.vector1_unsigned_long, symminfo: pyrosetta.rosetta.core.conformation.symmetry.SymmetryInfo) None

C++: protocols::cryst::MakeLayerMover::setup_xtal_symminfo(const class core::pose::Pose &, const unsigned long, const unsigned long, const unsigned long, const unsigned long, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, class core::conformation::symmetry::SymmetryInfo &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

wallpaper_group(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMover, wg_in: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) None

C++: protocols::cryst::MakeLayerMover::wallpaper_group(const class protocols::cryst::WallpaperGroup &) –> void

class pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator, : pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator) pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator

C++: protocols::cryst::MakeLayerMoverCreator::operator=(const class protocols::cryst::MakeLayerMoverCreator &) –> class protocols::cryst::MakeLayerMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::MakeLayerMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator) str

C++: protocols::cryst::MakeLayerMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.MakeLayerMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::MakeLayerMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::RecomputeDensityMapMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover, : pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover) pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover

C++: protocols::cryst::RecomputeDensityMapMover::operator=(const class protocols::cryst::RecomputeDensityMapMover &) –> class protocols::cryst::RecomputeDensityMapMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::RecomputeDensityMapMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover) str

C++: protocols::cryst::RecomputeDensityMapMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::RecomputeDensityMapMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::RecomputeDensityMapMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::RecomputeDensityMapMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator, : pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator) pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator

C++: protocols::cryst::RecomputeDensityMapMoverCreator::operator=(const class protocols::cryst::RecomputeDensityMapMoverCreator &) –> class protocols::cryst::RecomputeDensityMapMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::RecomputeDensityMapMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator) str

C++: protocols::cryst::RecomputeDensityMapMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.RecomputeDensityMapMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::RecomputeDensityMapMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.ReportGradientsMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::ReportGradientsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover, : pyrosetta.rosetta.protocols.cryst.ReportGradientsMover) pyrosetta.rosetta.protocols.cryst.ReportGradientsMover

C++: protocols::cryst::ReportGradientsMover::operator=(const class protocols::cryst::ReportGradientsMover &) –> class protocols::cryst::ReportGradientsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::ReportGradientsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

compute(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover, pose: pyrosetta.rosetta.core.pose.Pose) float

C++: protocols::cryst::ReportGradientsMover::compute(class core::pose::Pose &) –> double

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover) str

C++: protocols::cryst::ReportGradientsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::ReportGradientsMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

normalization(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover, pose: pyrosetta.rosetta.core.pose.Pose, atmid: pyrosetta.rosetta.core.id.AtomID, sfxn: pyrosetta.rosetta.core.scoring.ScoreFunction) float

C++: protocols::cryst::ReportGradientsMover::normalization(class core::pose::Pose &, class core::id::AtomID, class std::shared_ptr<class core::scoring::ScoreFunction>) –> double

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::ReportGradientsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::ReportGradientsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator, : pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator) pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator

C++: protocols::cryst::ReportGradientsMoverCreator::operator=(const class protocols::cryst::ReportGradientsMoverCreator &) –> class protocols::cryst::ReportGradientsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::ReportGradientsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator) str

C++: protocols::cryst::ReportGradientsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.ReportGradientsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::ReportGradientsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::SetCrystWeightMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover, : pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover) pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover

C++: protocols::cryst::SetCrystWeightMover::operator=(const class protocols::cryst::SetCrystWeightMover &) –> class protocols::cryst::SetCrystWeightMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::SetCrystWeightMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover) str

C++: protocols::cryst::SetCrystWeightMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::SetCrystWeightMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::SetCrystWeightMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::SetCrystWeightMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator, : pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator) pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator

C++: protocols::cryst::SetCrystWeightMoverCreator::operator=(const class protocols::cryst::SetCrystWeightMoverCreator &) –> class protocols::cryst::SetCrystWeightMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::SetCrystWeightMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator) str

C++: protocols::cryst::SetCrystWeightMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.SetCrystWeightMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::SetCrystWeightMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::SetRefinementOptionsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover, : pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover) pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover

C++: protocols::cryst::SetRefinementOptionsMover::operator=(const class protocols::cryst::SetRefinementOptionsMover &) –> class protocols::cryst::SetRefinementOptionsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::SetRefinementOptionsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover) str

C++: protocols::cryst::SetRefinementOptionsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::SetRefinementOptionsMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::SetRefinementOptionsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::SetRefinementOptionsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator, : pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator) pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator

C++: protocols::cryst::SetRefinementOptionsMoverCreator::operator=(const class protocols::cryst::SetRefinementOptionsMoverCreator &) –> class protocols::cryst::SetRefinementOptionsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::SetRefinementOptionsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator) str

C++: protocols::cryst::SetRefinementOptionsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.SetRefinementOptionsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::SetRefinementOptionsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.Spacegroup

Bases: pybind11_builtins.pybind11_object

A(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::A() const –> double

B(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::B() const –> double

C(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::C() const –> double

alpha(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::alpha() const –> double

assign(self: pyrosetta.rosetta.protocols.cryst.Spacegroup, : pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.protocols.cryst.Spacegroup

C++: protocols::cryst::Spacegroup::operator=(const class protocols::cryst::Spacegroup &) –> class protocols::cryst::Spacegroup &

beta(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::beta() const –> double

c2f(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.numeric.xyzMatrix_double_t

C++: protocols::cryst::Spacegroup::c2f() const –> const class numeric::xyzMatrix<double> &

cheshire_cell(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.protocols.cryst.CheshireCell

C++: protocols::cryst::Spacegroup::cheshire_cell() const –> struct protocols::cryst::CheshireCell

f2c(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.numeric.xyzMatrix_double_t

C++: protocols::cryst::Spacegroup::f2c() const –> const class numeric::xyzMatrix<double> &

gamma(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::gamma() const –> double

get_moveable_dofs(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) str

C++: protocols::cryst::Spacegroup::get_moveable_dofs() const –> std::string

get_nrot_dofs(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) int

C++: protocols::cryst::Spacegroup::get_nrot_dofs() –> unsigned long

get_nsubdivisions(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t

C++: protocols::cryst::Spacegroup::get_nsubdivisions() const –> class numeric::xyzVector<unsigned long>

get_trans_dofs(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t

C++: protocols::cryst::Spacegroup::get_trans_dofs() –> class numeric::xyzVector<unsigned long>

minmult(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) int

C++: protocols::cryst::Spacegroup::minmult() const –> unsigned long

name(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) str

C++: protocols::cryst::Spacegroup::name() const –> std::string

nsymmops(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) int

C++: protocols::cryst::Spacegroup::nsymmops() const –> unsigned long

pdbname(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) str

C++: protocols::cryst::Spacegroup::pdbname() const –> std::string

set_parameters(self: pyrosetta.rosetta.protocols.cryst.Spacegroup, a_in: float, b_in: float, c_in: float, alpha_in: float, beta_in: float, gamma_in: float) None

C++: protocols::cryst::Spacegroup::set_parameters(double, double, double, double, double, double) –> void

set_spacegroup(self: pyrosetta.rosetta.protocols.cryst.Spacegroup, name_in: str) None

C++: protocols::cryst::Spacegroup::set_spacegroup(std::string) –> void

setting(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.protocols.cryst.SpacegroupSetting

C++: protocols::cryst::Spacegroup::setting() const –> enum protocols::cryst::SpacegroupSetting

symmop(self: pyrosetta.rosetta.protocols.cryst.Spacegroup, i: int) pyrosetta.rosetta.core.kinematics.RT

C++: protocols::cryst::Spacegroup::symmop(unsigned long) const –> class core::kinematics::RT

symmops(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) pyrosetta.rosetta.utility.vector1_core_kinematics_RT

C++: protocols::cryst::Spacegroup::symmops() const –> const class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &

volume(self: pyrosetta.rosetta.protocols.cryst.Spacegroup) float

C++: protocols::cryst::Spacegroup::volume() const –> double

class pyrosetta.rosetta.protocols.cryst.SpacegroupSetting

Bases: pybind11_builtins.pybind11_object

Members:

TRICLINIC

MONOCLINIC

ORTHORHOMBIC

TETRAGONAL

HEXAGONAL

CUBIC

NOSETTING

CUBIC = <SpacegroupSetting.CUBIC: 5>
HEXAGONAL = <SpacegroupSetting.HEXAGONAL: 4>
MONOCLINIC = <SpacegroupSetting.MONOCLINIC: 1>
NOSETTING = <SpacegroupSetting.NOSETTING: 6>
ORTHORHOMBIC = <SpacegroupSetting.ORTHORHOMBIC: 2>
TETRAGONAL = <SpacegroupSetting.TETRAGONAL: 3>
TRICLINIC = <SpacegroupSetting.TRICLINIC: 0>
property name
class pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::TagPoseWithRefinementStatsMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover, : pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover) pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover

C++: protocols::cryst::TagPoseWithRefinementStatsMover::operator=(const class protocols::cryst::TagPoseWithRefinementStatsMover &) –> class protocols::cryst::TagPoseWithRefinementStatsMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::TagPoseWithRefinementStatsMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover) str

C++: protocols::cryst::TagPoseWithRefinementStatsMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::TagPoseWithRefinementStatsMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::TagPoseWithRefinementStatsMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::TagPoseWithRefinementStatsMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator, : pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator) pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator

C++: protocols::cryst::TagPoseWithRefinementStatsMoverCreator::operator=(const class protocols::cryst::TagPoseWithRefinementStatsMoverCreator &) –> class protocols::cryst::TagPoseWithRefinementStatsMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::TagPoseWithRefinementStatsMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator) str

C++: protocols::cryst::TagPoseWithRefinementStatsMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.TagPoseWithRefinementStatsMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::TagPoseWithRefinementStatsMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::UpdateCrystInfo::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo, : pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo) pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo

C++: protocols::cryst::UpdateCrystInfo::operator=(const class protocols::cryst::UpdateCrystInfo &) –> class protocols::cryst::UpdateCrystInfo &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::UpdateCrystInfo::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::UpdateCrystInfo::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo) str

C++: protocols::cryst::UpdateCrystInfo::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::UpdateCrystInfo::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfo, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::UpdateCrystInfo::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::UpdateCrystInfo::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator, : pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator) pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator

C++: protocols::cryst::UpdateCrystInfoCreator::operator=(const class protocols::cryst::UpdateCrystInfoCreator &) –> class protocols::cryst::UpdateCrystInfoCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::UpdateCrystInfoCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator) str

C++: protocols::cryst::UpdateCrystInfoCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.UpdateCrystInfoCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::UpdateCrystInfoCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.UpdateSolventMover

Bases: pyrosetta.rosetta.protocols.moves.Mover

apply(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMover, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: protocols::cryst::UpdateSolventMover::apply(class core::pose::Pose &) –> void

assign(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMover, : pyrosetta.rosetta.protocols.cryst.UpdateSolventMover) pyrosetta.rosetta.protocols.cryst.UpdateSolventMover

C++: protocols::cryst::UpdateSolventMover::operator=(const class protocols::cryst::UpdateSolventMover &) –> class protocols::cryst::UpdateSolventMover &

clear_info(self: pyrosetta.rosetta.protocols.moves.Mover) None

Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file.

clear_info is called by jd2 before calling apply

C++: protocols::moves::Mover::clear_info() –> void

clone(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::UpdateSolventMover::clone() const –> class std::shared_ptr<class protocols::moves::Mover>

create(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::create() –> class std::shared_ptr<class protocols::moves::Mover>

fresh_instance(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

Generates a new Mover object freshly created with the default ctor.

C++: protocols::moves::Mover::fresh_instance() const –> class std::shared_ptr<class protocols::moves::Mover>

get_additional_output(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

fpd

Mechanism by which a mover may return multiple output poses from a single input pose.

Supported in JD2. Will attempt to grab additional poses until a nullptr is returned.

C++: protocols::moves::Mover::get_additional_output() –> class std::shared_ptr<class core::pose::Pose>

get_current_job(self: pyrosetta.rosetta.protocols.moves.Mover) protocols::jobdist::BasicJob

C++: protocols::moves::Mover::get_current_job() const –> class std::shared_ptr<const class protocols::jobdist::BasicJob>

get_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover) str
A tag is a unique identifier used to identify structures produced

by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor.

C++: protocols::moves::Mover::get_current_tag() const –> std::string

get_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_input_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_last_move_status(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.MoverStatus

returns status after an apply(). The job distributor (august 08 vintage) will check this function to see if your protocol wants to filter its results - if your protocol wants to say “that run was no good, skip it” then use the protected last_move_status(MoverStatus) to change the value that this function will return.

C++: protocols::moves::Mover::get_last_move_status() const –> enum protocols::moves::MoverStatus

get_name(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMover) str

C++: protocols::cryst::UpdateSolventMover::get_name() const –> std::string

get_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.core.pose.Pose

C++: protocols::moves::Mover::get_native_pose() const –> class std::shared_ptr<const class core::pose::Pose>

get_self_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::moves::Mover::get_self_ptr() –> class std::shared_ptr<class protocols::moves::Mover>

get_self_weak_ptr(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.weak_ptr_protocols_moves_Mover_t

C++: protocols::moves::Mover::get_self_weak_ptr() –> class std::weak_ptr<class protocols::moves::Mover>

get_type(self: pyrosetta.rosetta.protocols.moves.Mover) str

C++: protocols::moves::Mover::get_type() const –> std::string

info(self: pyrosetta.rosetta.protocols.moves.Mover) pyrosetta.rosetta.std.list_std_string_std_allocator_std_string_t

non-const accessor

C++: protocols::moves::Mover::info() –> class std::list<std::string, class std::allocator<std::string > > &

last_proposal_density_ratio(self: pyrosetta.rosetta.protocols.moves.Mover) float

C++: protocols::moves::Mover::last_proposal_density_ratio() –> double

static mover_name() str

C++: protocols::cryst::UpdateSolventMover::mover_name() –> std::string

static name() str

C++: protocols::moves::Mover::name() –> std::string

parse_my_tag(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMover, tag: pyrosetta.rosetta.utility.tag.Tag, data: pyrosetta.rosetta.basic.datacache.DataMap) None

C++: protocols::cryst::UpdateSolventMover::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.protocols.moves.Mover, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) None
Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by movers wishing to provide citation information.

C++: protocols::moves::Mover::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::UpdateSolventMover::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

static register_options() None

Overload this static method if you access options within the mover.

These options will end up in -help of your application if users of this mover call register_options. Do this recursively! If you use movers within your mover, call their register_options in your register_options() method.

C++: protocols::moves::Mover::register_options() –> void

reinitialize_for_each_job(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be freshly regenerated on

each use.

C++: protocols::moves::Mover::reinitialize_for_each_job() const –> bool

reinitialize_for_new_input(self: pyrosetta.rosetta.protocols.moves.Mover) bool
Inform the Job Distributor (August ‘08 vintage) whether this object needs to be regenerated when the input

pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose).

C++: protocols::moves::Mover::reinitialize_for_new_input() const –> bool

reset_status(self: pyrosetta.rosetta.protocols.moves.Mover) None

resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s.

C++: protocols::moves::Mover::reset_status() –> void

set_current_job(self: pyrosetta.rosetta.protocols.moves.Mover, job: protocols::jobdist::BasicJob) None

C++: protocols::moves::Mover::set_current_job(class std::shared_ptr<const class protocols::jobdist::BasicJob>) –> void

set_current_tag(self: pyrosetta.rosetta.protocols.moves.Mover, new_tag: str) None

C++: protocols::moves::Mover::set_current_tag(const std::string &) –> void

set_input_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for poses contained for rms

C++: protocols::moves::Mover::set_input_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_native_pose(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None

setter for native poses contained for rms —- we should get rid of this method? it is widely used, but a bit unsafe

C++: protocols::moves::Mover::set_native_pose(class std::shared_ptr<const class core::pose::Pose>) –> void

set_type(self: pyrosetta.rosetta.protocols.moves.Mover, setting: str) None

Set the ‘type’ string

C++: protocols::moves::Mover::set_type(const std::string &) –> void

show(*args, **kwargs)

Overloaded function.

  1. show(self: pyrosetta.rosetta.protocols.moves.Mover) -> None

  2. show(self: pyrosetta.rosetta.protocols.moves.Mover, output: pyrosetta.rosetta.std.ostream) -> None

Outputs details about the Mover, including current settings.

C++: protocols::moves::Mover::show(std::ostream &) const –> void

test_move(self: pyrosetta.rosetta.protocols.moves.Mover, pose: pyrosetta.rosetta.core.pose.Pose) None
: Unit test support function. Apply one move to a given pose.

Allows extra test specific functions to be called before applying

C++: protocols::moves::Mover::test_move(class core::pose::Pose &) –> void

type(*args, **kwargs)

Overloaded function.

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover, type_in: str) -> None

Set the ‘type’ string

C++: protocols::moves::Mover::type(const std::string &) –> void

  1. type(self: pyrosetta.rosetta.protocols.moves.Mover) -> str

Get the set ‘type’ string

C++: protocols::moves::Mover::type() const –> const std::string &

class pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator

Bases: pyrosetta.rosetta.protocols.moves.MoverCreator

assign(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator, : pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator) pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator

C++: protocols::cryst::UpdateSolventMoverCreator::operator=(const class protocols::cryst::UpdateSolventMoverCreator &) –> class protocols::cryst::UpdateSolventMoverCreator &

create_mover(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator) pyrosetta.rosetta.protocols.moves.Mover

C++: protocols::cryst::UpdateSolventMoverCreator::create_mover() const –> class std::shared_ptr<class protocols::moves::Mover>

keyname(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator) str

C++: protocols::cryst::UpdateSolventMoverCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.cryst.UpdateSolventMoverCreator, xsd: utility::tag::XMLSchemaDefinition) None

C++: protocols::cryst::UpdateSolventMoverCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.cryst.WallpaperGroup

Bases: pybind11_builtins.pybind11_object

A(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) float

C++: protocols::cryst::WallpaperGroup::A() const –> double

B(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) float

C++: protocols::cryst::WallpaperGroup::B() const –> double

alpha(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) float

C++: protocols::cryst::WallpaperGroup::alpha() const –> double

assign(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup, : pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.protocols.cryst.WallpaperGroup

C++: protocols::cryst::WallpaperGroup::operator=(const class protocols::cryst::WallpaperGroup &) –> class protocols::cryst::WallpaperGroup &

c2f(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.numeric.xyzMatrix_double_t

C++: protocols::cryst::WallpaperGroup::c2f() const –> const class numeric::xyzMatrix<double> &

cheshire_cell(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.protocols.cryst.CheshireCell

C++: protocols::cryst::WallpaperGroup::cheshire_cell() const –> struct protocols::cryst::CheshireCell

f2c(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.numeric.xyzMatrix_double_t

C++: protocols::cryst::WallpaperGroup::f2c() const –> const class numeric::xyzMatrix<double> &

get_moveable_dofs(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) str

C++: protocols::cryst::WallpaperGroup::get_moveable_dofs() const –> std::string

get_nrot_dofs(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) int

C++: protocols::cryst::WallpaperGroup::get_nrot_dofs() –> unsigned long

get_nsubdivisions(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t

C++: protocols::cryst::WallpaperGroup::get_nsubdivisions() –> class numeric::xyzVector<unsigned long>

get_trans_dofs(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.numeric.xyzVector_unsigned_long_t

C++: protocols::cryst::WallpaperGroup::get_trans_dofs() –> class numeric::xyzVector<unsigned long>

minmult(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) int

C++: protocols::cryst::WallpaperGroup::minmult() const –> unsigned long

nsymmops(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) int

C++: protocols::cryst::WallpaperGroup::nsymmops() const –> unsigned long

pdbname(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) str

C++: protocols::cryst::WallpaperGroup::pdbname() const –> std::string

set_parameters(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup, a_in: float, b_in: float, alpha_in: float) None

C++: protocols::cryst::WallpaperGroup::set_parameters(double, double, double) –> void

set_wallpaper_group(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup, name_in: str) None

C++: protocols::cryst::WallpaperGroup::set_wallpaper_group(std::string) –> void

setting(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.protocols.cryst.WallpaperGroupSetting

C++: protocols::cryst::WallpaperGroup::setting() const –> enum protocols::cryst::WallpaperGroupSetting

symmop(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup, i: int) pyrosetta.rosetta.core.kinematics.RT

C++: protocols::cryst::WallpaperGroup::symmop(unsigned long) const –> class core::kinematics::RT

symmops(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) pyrosetta.rosetta.utility.vector1_core_kinematics_RT

C++: protocols::cryst::WallpaperGroup::symmops() const –> const class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &

volume(self: pyrosetta.rosetta.protocols.cryst.WallpaperGroup) float

C++: protocols::cryst::WallpaperGroup::volume() const –> double

class pyrosetta.rosetta.protocols.cryst.WallpaperGroupSetting

Bases: pybind11_builtins.pybind11_object

Members:

wgMONOCLINIC

wgTETRAGONAL

wgHEXAGONAL

wgCUBIC

wgNOSETTING

property name
wgCUBIC = <WallpaperGroupSetting.wgCUBIC: 3>
wgHEXAGONAL = <WallpaperGroupSetting.wgHEXAGONAL: 2>
wgMONOCLINIC = <WallpaperGroupSetting.wgMONOCLINIC: 0>
wgNOSETTING = <WallpaperGroupSetting.wgNOSETTING: 4>
wgTETRAGONAL = <WallpaperGroupSetting.wgTETRAGONAL: 1>
pyrosetta.rosetta.protocols.cryst.absfpart(x: float) float

C++: protocols::cryst::absfpart(double) –> double

pyrosetta.rosetta.protocols.cryst.crystRMS(*args, **kwargs)

Overloaded function.

  1. crystRMS(pose_native: pyrosetta.rosetta.core.pose.Pose, pose_decoy: pyrosetta.rosetta.core.pose.Pose) -> float

  2. crystRMS(pose_native: pyrosetta.rosetta.core.pose.Pose, pose_decoy: pyrosetta.rosetta.core.pose.Pose, allatom: bool) -> float

  3. crystRMS(pose_native: pyrosetta.rosetta.core.pose.Pose, pose_decoy: pyrosetta.rosetta.core.pose.Pose, allatom: bool, native_cdist: int) -> float

  4. crystRMS(pose_native: pyrosetta.rosetta.core.pose.Pose, pose_decoy: pyrosetta.rosetta.core.pose.Pose, allatom: bool, native_cdist: int, decoy_cdist: int) -> float

C++: protocols::cryst::crystRMS(class core::pose::Pose &, class core::pose::Pose &, bool, int, int) –> double

pyrosetta.rosetta.protocols.cryst.crystRMSfast(pose_native: pyrosetta.rosetta.core.pose.Pose, pose_decoy: pyrosetta.rosetta.core.pose.Pose) float

C++: protocols::cryst::crystRMSfast(class core::pose::Pose &, class core::pose::Pose &) –> double

pyrosetta.rosetta.protocols.cryst.denom(x: float) int

C++: protocols::cryst::denom(double) –> unsigned long

pyrosetta.rosetta.protocols.cryst.get_nres_asu(pose: pyrosetta.rosetta.core.pose.Pose) int

C++: protocols::cryst::get_nres_asu(const class core::pose::Pose &) –> unsigned long

pyrosetta.rosetta.protocols.cryst.get_symmops_Aba2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Aba2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Abm2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Abm2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ama2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ama2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Amm2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Amm2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_B11m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_B11m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C121(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C121(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C12slashc1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C12slashc1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C12slashm1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C12slashm1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C1c1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C1c1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C1m1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C1m1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C222(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C222(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_C2221(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_C2221(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ccc2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ccc2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ccca__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ccca__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cccm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cccm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmc21(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmc21(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmca(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmca(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmcm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmcm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmm2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmm2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmma(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmma(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Cmmm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Cmmm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_F222(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_F222(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_F23(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_F23(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_F4132(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_F4132(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_F432(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_F432(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fdd2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fdd2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fddd__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fddd__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fdminus3__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fdminus3__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fdminus3c__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fdminus3c__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fdminus3m__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fdminus3m__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fminus43c(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fminus43c(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fminus43m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fminus43m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fmm2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fmm2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fmminus3(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fmminus3(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fmminus3c(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fmminus3c(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fmminus3m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fmminus3m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Fmmm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Fmmm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I212121(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I212121(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I213(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I213(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I222(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I222(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I23(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I23(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4122(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4122(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4132(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4132(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41cd(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41cd(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41md(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41md(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41slasha__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41slasha__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41slashacd__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41slashacd__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I41slashamd__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I41slashamd__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I422(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I422(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I432(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I432(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4cm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4cm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4mm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4mm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4slashm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4slashm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4slashmcm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4slashmcm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_I4slashmmm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_I4slashmmm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iaminus3(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iaminus3(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iaminus3d(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iaminus3d(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iba2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iba2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ibam(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ibam(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ibca(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ibca(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Ima2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Ima2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus4(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus4(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus42d(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus42d(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus42m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus42m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus43d(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus43d(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus43m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus43m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus4c2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus4c2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Iminus4m2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Iminus4m2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Imm2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Imm2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Imma(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Imma(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Imminus3(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Imminus3(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Imminus3m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Imminus3m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_Immm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_Immm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P121(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P121(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P1211(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P1211(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P121slashc1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P121slashc1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P121slashm1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P121slashm1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P121slashn1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P121slashn1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P12slashc1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P12slashc1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P12slashm1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P12slashm1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P1c1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P1c1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P1m1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P1m1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P21212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P21212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P212121(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P212121(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P213(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P213(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P222(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P222(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P2221(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P2221(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P23(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P23(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P31(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P31(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3112(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3112(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P312(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P312(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3121(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3121(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P31c(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P31c(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P31m(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P31m(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P32(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P32(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P321(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P321(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3221(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3221(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3c1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3c1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P3m1(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P3m1(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P41(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P41(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P41212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P41212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4122(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4122(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4132(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4132(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P422(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P422(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4222(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4222(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4232(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4232(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42bc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42bc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42cm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42cm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42mc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42mc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42nm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42nm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashmbc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashmbc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashmcm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashmcm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashmmc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashmmc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashmnm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashmnm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashn__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashn__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashnbc__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashnbc__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashncm__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashncm__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashnmc__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashnmc__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P42slashnnm__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P42slashnnm__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P43(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P43(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P432(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P432(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P43212(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P43212(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4322(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4322(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4332(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4332(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4bm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4bm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4cc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4cc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4mm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4mm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4nc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4nc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashmbm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashmbm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashmcc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashmcc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashmmm(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashmmm(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashmnc(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashmnc(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashn__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashn__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashnbm__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashnbm__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashncc__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashncc__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashnmm__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell) None

C++: protocols::cryst::get_symmops_P4slashnmm__2(class utility::vector1<class core::kinematics::RT, class std::allocator<class core::kinematics::RT> > &, struct protocols::cryst::CheshireCell &) –> void

pyrosetta.rosetta.protocols.cryst.get_symmops_P4slashnnc__2(rt_out: pyrosetta.rosetta.utility.vector1_core_kinematics_RT, cc: pyrosetta.rosetta.protocols.cryst.CheshireCell