selectors¶

Bindings for protocols::fold_from_loops::selectors namespace

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector¶

Bases: ResidueSelector

_pybind11_conduit_v1_()¶

angle(*args, **kwargs)¶

Overloaded function.

angle(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) -> bool

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::angle() const –> bool

angle(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, pick: bool) -> None

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::angle(bool) –> void

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::operator=(const class protocols::fold_from_loops::selectors::ConstraintResidueSelector &) –> class protocols::fold_from_loops::selectors::ConstraintResidueSelector &

static class_name() → str¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy this object and return an owning pointer to the new object.

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

static default_angle() → bool¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::default_angle() –> bool

static default_dihedral() → bool¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::default_dihedral() –> bool

static default_distance() → bool¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::default_distance() –> bool

dihedral(*args, **kwargs)¶

Overloaded function.

dihedral(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) -> bool

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::dihedral() const –> bool

dihedral(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, pick: bool) -> None

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::dihedral(bool) –> void

distance(*args, **kwargs)¶

Overloaded function.

distance(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) -> bool

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::distance() const –> bool

distance(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, pick: bool) -> None

C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::distance(bool) –> void

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector) → str¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::get_name() const –> std::string

get_residues(pose)¶

Return a python list object of selected residues in pose numbering.

Args:: pose: a Pose object to which to apply this residue selector.
Returns:: A list object of selected residues in pose numbering.

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by residue selectors wishing to provide citation information.

C++: core::select::residue_selector::ResidueSelector::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

selection_positions(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long¶

Calls apply and returns the Rosetta numbering corresponding to the selected residues

C++: core::select::residue_selector::ResidueSelector::selection_positions(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator¶

Bases: ResidueSelectorCreator

_pybind11_conduit_v1_()¶

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator::operator=(const class protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator &) –> class protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator &

create_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator::create_residue_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator) → str¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ConstraintResidueSelectorCreator, : utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::ConstraintResidueSelectorCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector¶

Bases: ResidueSelector

_pybind11_conduit_v1_()¶

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::operator=(const class protocols::fold_from_loops::selectors::CutpointResidueSelector &) –> class protocols::fold_from_loops::selectors::CutpointResidueSelector &

static class_name() → str¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy this object and return an owning pointer to the new object.

C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector) → str¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::get_name() const –> std::string

get_residues(pose)¶

Return a python list object of selected residues in pose numbering.

Args:: pose: a Pose object to which to apply this residue selector.
Returns:: A list object of selected residues in pose numbering.

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by residue selectors wishing to provide citation information.

C++: core::select::residue_selector::ResidueSelector::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

selection_positions(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long¶

Calls apply and returns the Rosetta numbering corresponding to the selected residues

C++: core::select::residue_selector::ResidueSelector::selection_positions(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

use_foldtree(*args, **kwargs)¶

Overloaded function.

use_foldtree(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector, pick: bool) -> None

C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree(bool) –> void

use_foldtree(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelector) -> bool

C++: protocols::fold_from_loops::selectors::CutpointResidueSelector::use_foldtree() const –> bool

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator¶

Bases: ResidueSelectorCreator

_pybind11_conduit_v1_()¶

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::operator=(const class protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator &) –> class protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator &

create_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::create_residue_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator) → str¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.CutpointResidueSelectorCreator, : utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::CutpointResidueSelectorCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector¶

Bases: ResidueSelector

_pybind11_conduit_v1_()¶

apply(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_bool¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::apply(const class core::pose::Pose &) const –> class utility::vector1<bool, class std::allocator<bool> >

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::operator=(const class protocols::fold_from_loops::selectors::ProteinResidueSelector &) –> class protocols::fold_from_loops::selectors::ProteinResidueSelector &

static class_name() → str¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::class_name() –> std::string

clone(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶

Clone operator.

Copy this object and return an owning pointer to the new object.

C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::clone() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

get_name(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector) → str¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::get_name() const –> std::string

get_residues(pose)¶

Return a python list object of selected residues in pose numbering.

Args:: pose: a Pose object to which to apply this residue selector.
Returns:: A list object of selected residues in pose numbering.

parse_my_tag(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelector, tag: pyrosetta.rosetta.utility.tag.Tag, datamap: pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::parse_my_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by residue selectors wishing to provide citation information.

C++: core::select::residue_selector::ResidueSelector::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelector::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

selection_positions(self: pyrosetta.rosetta.core.select.residue_selector.ResidueSelector, pose: pyrosetta.rosetta.core.pose.Pose) → pyrosetta.rosetta.utility.vector1_unsigned_long¶

Calls apply and returns the Rosetta numbering corresponding to the selected residues

C++: core::select::residue_selector::ResidueSelector::selection_positions(const class core::pose::Pose &) const –> class utility::vector1<unsigned long, class std::allocator<unsigned long> >

class pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator¶

Bases: ResidueSelectorCreator

_pybind11_conduit_v1_()¶

assign(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator, : pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator) → pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator::operator=(const class protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator &) –> class protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator &

create_residue_selector(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator) → pyrosetta.rosetta.core.select.residue_selector.ResidueSelector¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator::create_residue_selector() const –> class std::shared_ptr<class core::select::residue_selector::ResidueSelector>

keyname(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator) → str¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.fold_from_loops.selectors.ProteinResidueSelectorCreator, : utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::fold_from_loops::selectors::ProteinResidueSelectorCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void