rna

Bindings for core::io::rna namespace

class pyrosetta.rosetta.core.io.rna.RDAT

Bases: pybind11_builtins.pybind11_object

annotations(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_std_pair_std_string_std_string_t

C++: core::io::rna::RDAT::annotations() const –> const class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > &

assign(self: pyrosetta.rosetta.core.io.rna.RDAT, : pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.core.io.rna.RDAT

C++: core::io::rna::RDAT::operator=(const class core::io::rna::RDAT &) –> class core::io::rna::RDAT &

check_rdat(self: pyrosetta.rosetta.core.io.rna.RDAT) bool

C++: core::io::rna::RDAT::check_rdat() const –> bool

comments(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_std_string

C++: core::io::rna::RDAT::comments() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

data_annotations(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_utility_vector1_std_pair_std_string_std_string_std_allocator_std_pair_std_string_std_string_t

C++: core::io::rna::RDAT::data_annotations() const –> const class utility::vector1<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > >, class std::allocator<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > > > &

fill_data_from_features(self: pyrosetta.rosetta.core.io.rna.RDAT, seqchars: pyrosetta.rosetta.utility.vector1_char, resnums: pyrosetta.rosetta.utility.vector1_unsigned_long, feature_names: pyrosetta.rosetta.utility.vector1_std_string, all_feature_vals: pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t) None

C++: core::io::rna::RDAT::fill_data_from_features(const class utility::vector1<char, class std::allocator<char> > &, const class utility::vector1<unsigned long, class std::allocator<unsigned long> > &, const class utility::vector1<std::string, class std::allocator<std::string > > &, const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &) –> void

fill_header_information(self: pyrosetta.rosetta.core.io.rna.RDAT, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: core::io::rna::RDAT::fill_header_information(class core::pose::Pose &) –> void

name(self: pyrosetta.rosetta.core.io.rna.RDAT) str

C++: core::io::rna::RDAT::name() const –> const std::string &

offset(self: pyrosetta.rosetta.core.io.rna.RDAT) int

C++: core::io::rna::RDAT::offset() const –> const int &

output_data(self: pyrosetta.rosetta.core.io.rna.RDAT, out: pyrosetta.rosetta.utility.io.ozstream) None

C++: core::io::rna::RDAT::output_data(class utility::io::ozstream &) const –> void

output_rdat_to_file(self: pyrosetta.rosetta.core.io.rna.RDAT, filename: str) None

C++: core::io::rna::RDAT::output_rdat_to_file(const std::string &) const –> void

reactivity(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t

C++: core::io::rna::RDAT::reactivity() const –> const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &

reactivity_error(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t

C++: core::io::rna::RDAT::reactivity_error() const –> const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &

read_rdat_file(self: pyrosetta.rosetta.core.io.rna.RDAT, filename: str) None

C++: core::io::rna::RDAT::read_rdat_file(const std::string &) –> void

seqpos(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_int

C++: core::io::rna::RDAT::seqpos() const –> const class utility::vector1<int, class std::allocator<int> > &

sequence(self: pyrosetta.rosetta.core.io.rna.RDAT) str

C++: core::io::rna::RDAT::sequence() const –> const std::string &

sequences(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_std_string

C++: core::io::rna::RDAT::sequences() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

set_annotations(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_std_pair_std_string_std_string_t) None

C++: core::io::rna::RDAT::set_annotations(const class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > &) –> void

set_comments(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_std_string) None

C++: core::io::rna::RDAT::set_comments(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_data_annotations(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_std_pair_std_string_std_string_std_allocator_std_pair_std_string_std_string_t) None

C++: core::io::rna::RDAT::set_data_annotations(const class utility::vector1<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > >, class std::allocator<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > > > &) –> void

set_name(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: str) None

C++: core::io::rna::RDAT::set_name(const std::string &) –> void

set_offset(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: int) None

C++: core::io::rna::RDAT::set_offset(const int &) –> void

set_reactivity(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t) None

C++: core::io::rna::RDAT::set_reactivity(const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &) –> void

set_reactivity_error(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t) None

C++: core::io::rna::RDAT::set_reactivity_error(const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &) –> void

set_seqpos(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_int) None

C++: core::io::rna::RDAT::set_seqpos(const class utility::vector1<int, class std::allocator<int> > &) –> void

set_sequence(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: str) None

C++: core::io::rna::RDAT::set_sequence(const std::string &) –> void

set_sequences(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_std_string) None

C++: core::io::rna::RDAT::set_sequences(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_structure(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: str) None

C++: core::io::rna::RDAT::set_structure(const std::string &) –> void

set_structures(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_std_string) None

C++: core::io::rna::RDAT::set_structures(const class utility::vector1<std::string, class std::allocator<std::string > > &) –> void

set_trace(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t) None

C++: core::io::rna::RDAT::set_trace(const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &) –> void

set_version(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: str) None

C++: core::io::rna::RDAT::set_version(const std::string &) –> void

set_xsel(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_double) None

C++: core::io::rna::RDAT::set_xsel(const class utility::vector1<double, class std::allocator<double> > &) –> void

set_xsel_refine(self: pyrosetta.rosetta.core.io.rna.RDAT, setting: pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t) None

C++: core::io::rna::RDAT::set_xsel_refine(const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &) –> void

structure(self: pyrosetta.rosetta.core.io.rna.RDAT) str

C++: core::io::rna::RDAT::structure() const –> const std::string &

structures(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_std_string

C++: core::io::rna::RDAT::structures() const –> const class utility::vector1<std::string, class std::allocator<std::string > > &

trace(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t

C++: core::io::rna::RDAT::trace() const –> const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &

version(self: pyrosetta.rosetta.core.io.rna.RDAT) str

C++: core::io::rna::RDAT::version() const –> const std::string &

xsel(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_double

C++: core::io::rna::RDAT::xsel() const –> const class utility::vector1<double, class std::allocator<double> > &

xsel_refine(self: pyrosetta.rosetta.core.io.rna.RDAT) pyrosetta.rosetta.utility.vector1_utility_vector1_double_std_allocator_double_t

C++: core::io::rna::RDAT::xsel_refine() const –> const class utility::vector1<class utility::vector1<double, class std::allocator<double> >, class std::allocator<class utility::vector1<double, class std::allocator<double> > > > &

class pyrosetta.rosetta.core.io.rna.RNA_DataReader

Bases: pybind11_builtins.pybind11_object

assign(self: pyrosetta.rosetta.core.io.rna.RNA_DataReader, : pyrosetta.rosetta.core.io.rna.RNA_DataReader) pyrosetta.rosetta.core.io.rna.RNA_DataReader

C++: core::io::rna::RNA_DataReader::operator=(const class core::io::rna::RNA_DataReader &) –> class core::io::rna::RNA_DataReader &

fill_rna_data_info(self: pyrosetta.rosetta.core.io.rna.RNA_DataReader, pose: pyrosetta.rosetta.core.pose.Pose) None

C++: core::io::rna::RNA_DataReader::fill_rna_data_info(class core::pose::Pose &) –> void

has_reactivities(self: pyrosetta.rosetta.core.io.rna.RNA_DataReader) bool

C++: core::io::rna::RNA_DataReader::has_reactivities() –> bool

initialize(self: pyrosetta.rosetta.core.io.rna.RNA_DataReader, rna_data_file: str) None

C++: core::io::rna::RNA_DataReader::initialize(const std::string &) –> void

pyrosetta.rosetta.core.io.rna.get_rna_data_info(*args, **kwargs)

Overloaded function.

  1. get_rna_data_info(pose: pyrosetta.rosetta.core.pose.Pose, rna_data_file: str) -> pyrosetta.rosetta.core.pose.rna.RNA_DataInfo

  2. get_rna_data_info(pose: pyrosetta.rosetta.core.pose.Pose, rna_data_file: str, scorefxn: pyrosetta.rosetta.core.scoring.ScoreFunction) -> pyrosetta.rosetta.core.pose.rna.RNA_DataInfo

C++: core::io::rna::get_rna_data_info(class core::pose::Pose &, const std::string &, class std::shared_ptr<class core::scoring::ScoreFunction>) –> const class core::pose::rna::RNA_DataInfo &

pyrosetta.rosetta.core.io.rna.get_tag(annotations: pyrosetta.rosetta.utility.vector1_std_pair_std_string_std_string_t, tag: str) str

C++: core::io::rna::get_tag(const class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > &, const std::string &) –> std::string

pyrosetta.rosetta.core.io.rna.get_tags(data_annotations: pyrosetta.rosetta.utility.vector1_utility_vector1_std_pair_std_string_std_string_std_allocator_std_pair_std_string_std_string_t, tag: str) pyrosetta.rosetta.utility.vector1_std_string

C++: core::io::rna::get_tags(const class utility::vector1<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > >, class std::allocator<class utility::vector1<struct std::pair<std::string, std::string >, class std::allocator<struct std::pair<std::string, std::string > > > > > &, const std::string &) –> class utility::vector1<std::string, class std::allocator<std::string > >