pack_interface¶

Bindings for protocols::pack_interface namespace

class pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter¶

Bases: TaskOperation

Class to alter a packer task to speficially upweight the protein-protein interaction energies

apply(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter, pose: pyrosetta.rosetta.core.pose.Pose, task: pyrosetta.rosetta.core.pack.task.PackerTask) → None¶

Change a packer task in some way. The input pose is the one to which the input: task will be later applied.

C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::apply(const class core::pose::Pose &, class core::pack::task::PackerTask &) const –> void

assign(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter, : pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter) → pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::operator=(const class protocols::pack_interface::ProteinProteinInterfaceUpweighter &) –> class protocols::pack_interface::ProteinProteinInterfaceUpweighter &

clone(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::clone() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

get_weight(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter) → float¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::get_weight() const –> double

static keyname() → str¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::keyname() –> std::string

parse_tag(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter, : pyrosetta.rosetta.utility.tag.Tag, : pyrosetta.rosetta.basic.datacache.DataMap) → None¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::parse_tag(class std::shared_ptr<const class utility::tag::Tag>, class basic::datacache::DataMap &) –> void

provide_citation_info(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperation, : pyrosetta.rosetta.basic.citation_manager.CitationCollectionList) → None¶

Provide citations to the passed CitationCollectionList

Subclasses should add the info for themselves and any other classes they use.

The default implementation of this function does nothing. It may be overriden by task operations wishing to provide citation information.

C++: core::pack::task::operation::TaskOperation::provide_citation_info(class basic::citation_manager::CitationCollectionList &) const –> void

static provide_xml_schema(xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) –> void

set_skip_loop_chains(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter, chains: str) → None¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::set_skip_loop_chains(const std::string &) –> void

set_weight(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighter, weight_in: float) → None¶

set the weight of the interaction across the interface

C++: protocols::pack_interface::ProteinProteinInterfaceUpweighter::set_weight(const double) –> void

class pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator¶

Bases: TaskOperationCreator

assign(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator, : pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator) → pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator::operator=(const class protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator &) –> class protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator &

create_task_operation(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator) → pyrosetta.rosetta.core.pack.task.operation.TaskOperation¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator::create_task_operation() const –> class std::shared_ptr<class core::pack::task::operation::TaskOperation>

keyname(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator) → str¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator::keyname() const –> std::string

provide_xml_schema(self: pyrosetta.rosetta.protocols.pack_interface.ProteinProteinInterfaceUpweighterTaskOperationCreator, xsd: utility::tag::XMLSchemaDefinition) → None¶: C++: protocols::pack_interface::ProteinProteinInterfaceUpweighterTaskOperationCreator::provide_xml_schema(class utility::tag::XMLSchemaDefinition &) const –> void

skip_citation_info_in_schema(self: pyrosetta.rosetta.core.pack.task.operation.TaskOperationCreator) → bool¶

Indicate whether we skip adding citation information to the XML schema.

False for any real task operation. True only for dummy task operations created for unit tests.

C++: core::pack::task::operation::TaskOperationCreator::skip_citation_info_in_schema() const –> bool