Package rosetta :: Package core :: Package chemical :: Module _core_chemical_ :: Class AA

Class AA

object --+        
         |        
       int --+    
             |    
       ??.enum --+
                 |
                AA

////////////////////////////////////////////////////////////////////////
 enumeration for amino acids and nucleotides types with the total
 number as num_aa_types
////////////////////////////////////////////////////////////////////////

Instance Methods

[hide private]

Inherited from unreachable.enum: __repr__, __str__

Inherited from int: __abs__, __add__, __and__, __cmp__, __coerce__, __div__, __divmod__, __float__, __floordiv__, __format__, __getattribute__, __getnewargs__, __hash__, __hex__, __index__, __int__, __invert__, __long__, __lshift__, __mod__, __mul__, __neg__, __new__, __nonzero__, __oct__, __or__, __pos__, __pow__, __radd__, __rand__, __rdiv__, __rdivmod__, __rfloordiv__, __rlshift__, __rmod__, __rmul__, __ror__, __rpow__, __rrshift__, __rshift__, __rsub__, __rtruediv__, __rxor__, __sub__, __truediv__, __trunc__, __xor__, bit_length, conjugate

Inherited from object: __delattr__, __init__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Variables

[hide private]

aa_ala = rosetta.core.chemical._core_chemical_.AA.aa_ala

aa_arg = rosetta.core.chemical._core_chemical_.AA.aa_arg

aa_asn = rosetta.core.chemical._core_chemical_.AA.aa_asn

aa_asp = rosetta.core.chemical._core_chemical_.AA.aa_asp

aa_b3a = rosetta.core.chemical._core_chemical_.AA.aa_b3a

aa_b3c = rosetta.core.chemical._core_chemical_.AA.aa_b3c

aa_b3cisACHC = rosetta.core.chemical._core_chemical_.AA.aa_b3c...

aa_b3cisACPC = rosetta.core.chemical._core_chemical_.AA.aa_b3c...

aa_b3cisACPrC = rosetta.core.chemical._core_chemical_.AA.aa_b3...

aa_b3d = rosetta.core.chemical._core_chemical_.AA.aa_b3d

aa_b3e = rosetta.core.chemical._core_chemical_.AA.aa_b3e

aa_b3f = rosetta.core.chemical._core_chemical_.AA.aa_b3f

aa_b3g = rosetta.core.chemical._core_chemical_.AA.aa_b3g

aa_b3h = rosetta.core.chemical._core_chemical_.AA.aa_b3h

aa_b3i = rosetta.core.chemical._core_chemical_.AA.aa_b3i

aa_b3k = rosetta.core.chemical._core_chemical_.AA.aa_b3k

aa_b3l = rosetta.core.chemical._core_chemical_.AA.aa_b3l

aa_b3m = rosetta.core.chemical._core_chemical_.AA.aa_b3m

aa_b3n = rosetta.core.chemical._core_chemical_.AA.aa_b3n

aa_b3p = rosetta.core.chemical._core_chemical_.AA.aa_b3p

aa_b3q = rosetta.core.chemical._core_chemical_.AA.aa_b3q

aa_b3r = rosetta.core.chemical._core_chemical_.AA.aa_b3r

aa_b3s = rosetta.core.chemical._core_chemical_.AA.aa_b3s

aa_b3t = rosetta.core.chemical._core_chemical_.AA.aa_b3t

aa_b3v = rosetta.core.chemical._core_chemical_.AA.aa_b3v

aa_b3w = rosetta.core.chemical._core_chemical_.AA.aa_b3w

aa_b3y = rosetta.core.chemical._core_chemical_.AA.aa_b3y

aa_cys = rosetta.core.chemical._core_chemical_.AA.aa_cys

aa_dal = rosetta.core.chemical._core_chemical_.AA.aa_dal

aa_dan = rosetta.core.chemical._core_chemical_.AA.aa_dan

aa_dar = rosetta.core.chemical._core_chemical_.AA.aa_dar

aa_das = rosetta.core.chemical._core_chemical_.AA.aa_das

aa_dcs = rosetta.core.chemical._core_chemical_.AA.aa_dcs

aa_dgn = rosetta.core.chemical._core_chemical_.AA.aa_dgn

aa_dgu = rosetta.core.chemical._core_chemical_.AA.aa_dgu

aa_dhi = rosetta.core.chemical._core_chemical_.AA.aa_dhi

aa_dil = rosetta.core.chemical._core_chemical_.AA.aa_dil

aa_dle = rosetta.core.chemical._core_chemical_.AA.aa_dle

aa_dly = rosetta.core.chemical._core_chemical_.AA.aa_dly

aa_dme = rosetta.core.chemical._core_chemical_.AA.aa_dme

aa_dph = rosetta.core.chemical._core_chemical_.AA.aa_dph

aa_dpr = rosetta.core.chemical._core_chemical_.AA.aa_dpr

aa_dse = rosetta.core.chemical._core_chemical_.AA.aa_dse

aa_dth = rosetta.core.chemical._core_chemical_.AA.aa_dth

aa_dtr = rosetta.core.chemical._core_chemical_.AA.aa_dtr

aa_dty = rosetta.core.chemical._core_chemical_.AA.aa_dty

aa_dva = rosetta.core.chemical._core_chemical_.AA.aa_dva

aa_gln = rosetta.core.chemical._core_chemical_.AA.aa_gln

aa_glu = rosetta.core.chemical._core_chemical_.AA.aa_glu

aa_gly = rosetta.core.chemical._core_chemical_.AA.aa_gly

aa_h2o = rosetta.core.chemical._core_chemical_.AA.aa_h2o

aa_his = rosetta.core.chemical._core_chemical_.AA.aa_his

aa_ile = rosetta.core.chemical._core_chemical_.AA.aa_ile

aa_leu = rosetta.core.chemical._core_chemical_.AA.aa_leu

aa_lys = rosetta.core.chemical._core_chemical_.AA.aa_lys

aa_met = rosetta.core.chemical._core_chemical_.AA.aa_met

aa_phe = rosetta.core.chemical._core_chemical_.AA.aa_phe

aa_pro = rosetta.core.chemical._core_chemical_.AA.aa_pro

aa_ser = rosetta.core.chemical._core_chemical_.AA.aa_ser

aa_thr = rosetta.core.chemical._core_chemical_.AA.aa_thr

aa_trp = rosetta.core.chemical._core_chemical_.AA.aa_trp

aa_tyr = rosetta.core.chemical._core_chemical_.AA.aa_tyr

aa_unk = rosetta.core.chemical._core_chemical_.AA.aa_unk

aa_unp = rosetta.core.chemical._core_chemical_.AA.aa_unp

aa_val = rosetta.core.chemical._core_chemical_.AA.aa_val

aa_vrt = rosetta.core.chemical._core_chemical_.AA.aa_vrt

first_DNA_aa = rosetta.core.chemical._core_chemical_.AA.first_...

first_D_aa = rosetta.core.chemical._core_chemical_.AA.first_D_aa

first_beta3_aa = rosetta.core.chemical._core_chemical_.AA.firs...

last_DNA_aa = rosetta.core.chemical._core_chemical_.AA.last_DN...

last_D_aa = rosetta.core.chemical._core_chemical_.AA.last_D_aa

last_beta3_aa = rosetta.core.chemical._core_chemical_.AA.last_...

na_ade = rosetta.core.chemical._core_chemical_.AA.na_ade

na_cyt = rosetta.core.chemical._core_chemical_.AA.na_cyt

na_gua = rosetta.core.chemical._core_chemical_.AA.na_gua

na_rad = rosetta.core.chemical._core_chemical_.AA.na_rad

na_rcy = rosetta.core.chemical._core_chemical_.AA.na_rcy

na_rgu = rosetta.core.chemical._core_chemical_.AA.na_rgu

na_thy = rosetta.core.chemical._core_chemical_.AA.na_thy

na_ura = rosetta.core.chemical._core_chemical_.AA.na_ura

names = {'aa_ala': rosetta.core.chemical._core_chemical_.AA.aa...

num_aa_types = rosetta.core.chemical._core_chemical_.AA.num_aa...

num_canonical_aas = rosetta.core.chemical._core_chemical_.AA.n...

values = {1: rosetta.core.chemical._core_chemical_.AA.aa_ala, ...

Properties

[hide private]

Inherited from unreachable.enum: name

Inherited from int: denominator, imag, numerator, real

Inherited from object: __class__

Class Variable Details

[hide private]

aa_b3cisACHC

Value:

rosetta.core.chemical._core_chemical_.AA.aa_b3cisACHC

aa_b3cisACPC

Value:

rosetta.core.chemical._core_chemical_.AA.aa_b3cisACPC

aa_b3cisACPrC

Value:

rosetta.core.chemical._core_chemical_.AA.aa_b3cisACPrC

first_DNA_aa

Value:

rosetta.core.chemical._core_chemical_.AA.first_DNA_aa

first_beta3_aa

Value:

rosetta.core.chemical._core_chemical_.AA.first_beta3_aa

last_DNA_aa

Value:

rosetta.core.chemical._core_chemical_.AA.last_DNA_aa

last_beta3_aa

Value:

rosetta.core.chemical._core_chemical_.AA.last_beta3_aa

names

Value:

{'aa_ala': rosetta.core.chemical._core_chemical_.AA.aa_ala,
 'aa_arg': rosetta.core.chemical._core_chemical_.AA.aa_arg,
 'aa_asn': rosetta.core.chemical._core_chemical_.AA.aa_asn,
 'aa_asp': rosetta.core.chemical._core_chemical_.AA.aa_asp,
 'aa_b3a': rosetta.core.chemical._core_chemical_.AA.aa_b3a,
 'aa_b3c': rosetta.core.chemical._core_chemical_.AA.aa_b3c,
 'aa_b3cisACHC': rosetta.core.chemical._core_chemical_.AA.aa_b3cisACHC
,
...

num_aa_types

Value:

rosetta.core.chemical._core_chemical_.AA.num_aa_types

num_canonical_aas

Value:

rosetta.core.chemical._core_chemical_.AA.num_canonical_aas

values

Value:

{1: rosetta.core.chemical._core_chemical_.AA.aa_ala,
 2: rosetta.core.chemical._core_chemical_.AA.aa_cys,
 3: rosetta.core.chemical._core_chemical_.AA.aa_asp,
 4: rosetta.core.chemical._core_chemical_.AA.aa_glu,
 5: rosetta.core.chemical._core_chemical_.AA.aa_phe,
 6: rosetta.core.chemical._core_chemical_.AA.aa_gly,
 7: rosetta.core.chemical._core_chemical_.AA.aa_his,
 8: rosetta.core.chemical._core_chemical_.AA.aa_ile,
...