Table of Contents

Everything

Modules

rosetta
rosetta.PyMolLink
rosetta.basic
rosetta.basic._basic_
rosetta.basic.database
rosetta.basic.database._basic_database_
rosetta.basic.database.insert_statement_generator
rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
rosetta.basic.database.schema_generator
rosetta.basic.database.schema_generator._basic_database_schema_generator_
rosetta.basic.datacache
rosetta.basic.datacache._basic_datacache_
rosetta.basic.gpu
rosetta.basic.gpu._basic_gpu_
rosetta.basic.message_listening
rosetta.basic.message_listening._basic_message_listening_
rosetta.basic.options
rosetta.basic.options._basic_options_
rosetta.basic.options.keys
rosetta.basic.options.keys._basic_options_keys_
rosetta.basic.resource_manager
rosetta.basic.resource_manager._basic_resource_manager_
rosetta.basic.resource_manager.fallback_configuration
rosetta.basic.resource_manager.fallback_configuration._basic_resource_manager_fallback_configuration_
rosetta.basic.resource_manager.locator
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
rosetta.basic.sampling
rosetta.basic.sampling._basic_sampling_
rosetta.basic.sampling.orientations
rosetta.basic.sampling.orientations._basic_sampling_orientations_
rosetta.basic.svd
rosetta.basic.svd._basic_svd_
rosetta.core
rosetta.core._core_
rosetta.core.chemical
rosetta.core.chemical._core_chemical_
rosetta.core.chemical.carbohydrates
rosetta.core.chemical.carbohydrates._core_chemical_carbohydrates_
rosetta.core.chemical.gasteiger
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
rosetta.core.chemical.orbitals
rosetta.core.chemical.orbitals._core_chemical_orbitals_
rosetta.core.chemical.residue_properties
rosetta.core.chemical.residue_properties._core_chemical_residue_properties_
rosetta.core.chemical.rna
rosetta.core.chemical.rna._core_chemical_rna_
rosetta.core.chemical.sdf
rosetta.core.chemical.sdf._core_chemical_sdf_
rosetta.core.coarse
rosetta.core.coarse._core_coarse_
rosetta.core.conformation
rosetta.core.conformation._core_conformation_
rosetta.core.conformation.membrane
rosetta.core.conformation.membrane._core_conformation_membrane_
rosetta.core.conformation.orbitals
rosetta.core.conformation.orbitals._core_conformation_orbitals_
rosetta.core.conformation.parametric
rosetta.core.conformation.parametric._core_conformation_parametric_
rosetta.core.conformation.signals
rosetta.core.conformation.signals._core_conformation_signals_
rosetta.core.conformation.symmetry
rosetta.core.conformation.symmetry._core_conformation_symmetry_
rosetta.core.environment
rosetta.core.environment._core_environment_
rosetta.core.fragment
rosetta.core.fragment._core_fragment_
rosetta.core.fragment.picking_old
rosetta.core.fragment.picking_old._core_fragment_picking_old_
rosetta.core.fragment.picking_old.concepts
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
rosetta.core.fragment.picking_old.vall
rosetta.core.fragment.picking_old.vall._core_fragment_picking_old_vall_
rosetta.core.fragment.picking_old.vall.eval
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
rosetta.core.fragment.picking_old.vall.gen
rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
rosetta.core.fragment.picking_old.vall.scores
rosetta.core.fragment.picking_old.vall.scores._core_fragment_picking_old_vall_scores_
rosetta.core.graph
rosetta.core.graph._core_graph_
rosetta.core.grid
rosetta.core.grid._core_grid_
rosetta.core.id
rosetta.core.id._core_id_
rosetta.core.import_pose
rosetta.core.import_pose._core_import_pose_
rosetta.core.import_pose.atom_tree_diffs
rosetta.core.import_pose.atom_tree_diffs._core_import_pose_atom_tree_diffs_
rosetta.core.import_pose.pose_stream
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
rosetta.core.indexed_structure_store
rosetta.core.indexed_structure_store._core_indexed_structure_store_
rosetta.core.init
rosetta.core.init._core_init_
rosetta.core.io
rosetta.core.io._core_io_
rosetta.core.io.carbohydrates
rosetta.core.io.carbohydrates._core_io_carbohydrates_
rosetta.core.io.ddg
rosetta.core.io.ddg._core_io_ddg_
rosetta.core.io.pdb
rosetta.core.io.pdb._core_io_pdb_
rosetta.core.io.raw_data
rosetta.core.io.raw_data._core_io_raw_data_
rosetta.core.io.rna
rosetta.core.io.rna._core_io_rna_
rosetta.core.io.sequence_comparation
rosetta.core.io.sequence_comparation._core_io_sequence_comparation_
rosetta.core.io.serialization
rosetta.core.io.serialization._core_io_serialization_
rosetta.core.io.silent
rosetta.core.io.silent._core_io_silent_
rosetta.core.kinematics
rosetta.core.kinematics._core_kinematics_
rosetta.core.kinematics.tree
rosetta.core.kinematics.tree._core_kinematics_tree_
rosetta.core.optimization
rosetta.core.optimization._core_optimization_
rosetta.core.optimization.symmetry
rosetta.core.optimization.symmetry._core_optimization_symmetry_
rosetta.core.pack
rosetta.core.pack._core_pack_
rosetta.core.pack.annealer
rosetta.core.pack.annealer._core_pack_annealer_
rosetta.core.pack.dunbrack
rosetta.core.pack.dunbrack._core_pack_dunbrack_
rosetta.core.pack.dunbrack.cenrot
rosetta.core.pack.dunbrack.cenrot._core_pack_dunbrack_cenrot_
rosetta.core.pack.interaction_graph
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
rosetta.core.pack.rotamer_set
rosetta.core.pack.rotamer_set._core_pack_rotamer_set_
rosetta.core.pack.rotamer_set.symmetry
rosetta.core.pack.rotamer_set.symmetry._core_pack_rotamer_set_symmetry_
rosetta.core.pack.scmin
rosetta.core.pack.scmin._core_pack_scmin_'
rosetta.core.pack.task
rosetta.core.pack.task._core_pack_task_
rosetta.core.pack.task.operation
rosetta.core.pack.task.operation._core_pack_task_operation_
rosetta.core.pack.task.operation.util
rosetta.core.pack.task.operation.util._core_pack_task_operation_util_
rosetta.core.pack.task.residue_selector
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
rosetta.core.pack.task.rna
rosetta.core.pack.task.rna._core_pack_task_rna_
rosetta.core.pose
rosetta.core.pose._core_pose_
rosetta.core.pose.carbohydrates
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
rosetta.core.pose.copydofs
rosetta.core.pose.copydofs._core_pose_copydofs_
rosetta.core.pose.datacache
rosetta.core.pose.datacache._core_pose_datacache_
rosetta.core.pose.full_model_info
rosetta.core.pose.full_model_info._core_pose_full_model_info_
rosetta.core.pose.metrics
rosetta.core.pose.metrics._core_pose_metrics_
rosetta.core.pose.metrics.simple_calculators
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
rosetta.core.pose.motif
rosetta.core.pose.motif._core_pose_motif_
rosetta.core.pose.ncbb
rosetta.core.pose.ncbb._core_pose_ncbb_
rosetta.core.pose.rna
rosetta.core.pose.rna._core_pose_rna_
rosetta.core.pose.signals
rosetta.core.pose.signals._core_pose_signals_
rosetta.core.pose.symmetry
rosetta.core.pose.symmetry._core_pose_symmetry_
rosetta.core.scoring
rosetta.core.scoring._core_scoring_
rosetta.core.scoring.bin_transitions
rosetta.core.scoring.bin_transitions._core_scoring_bin_transitions_
rosetta.core.scoring.carbohydrates
rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
rosetta.core.scoring.carbon_hbonds
rosetta.core.scoring.carbon_hbonds._core_scoring_carbon_hbonds_
rosetta.core.scoring.constraints
rosetta.core.scoring.constraints._core_scoring_constraints_
rosetta.core.scoring.cryst
rosetta.core.scoring.cryst._core_scoring_cryst_
rosetta.core.scoring.custom_pair_distance
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
rosetta.core.scoring.disulfides
rosetta.core.scoring.disulfides._core_scoring_disulfides_
rosetta.core.scoring.dna
rosetta.core.scoring.dna._core_scoring_dna_
rosetta.core.scoring.dssp
rosetta.core.scoring.dssp._core_scoring_dssp_
rosetta.core.scoring.elec
rosetta.core.scoring.elec._core_scoring_elec_
rosetta.core.scoring.electron_density
rosetta.core.scoring.electron_density._core_scoring_electron_density_
rosetta.core.scoring.electron_density_atomwise
rosetta.core.scoring.electron_density_atomwise._core_scoring_electron_density_atomwise_
rosetta.core.scoring.etable
rosetta.core.scoring.etable._core_scoring_etable_
rosetta.core.scoring.etable.coulomb
rosetta.core.scoring.etable.coulomb._core_scoring_etable_coulomb_
rosetta.core.scoring.etable.count_pair
rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
rosetta.core.scoring.etable.etrie
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
rosetta.core.scoring.facts
rosetta.core.scoring.facts._core_scoring_facts_
rosetta.core.scoring.fiber_diffraction
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
rosetta.core.scoring.func
rosetta.core.scoring.func._core_scoring_func_
rosetta.core.scoring.geometric_solvation
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
rosetta.core.scoring.hackaro
rosetta.core.scoring.hackaro._core_scoring_hackaro_
rosetta.core.scoring.hbonds
rosetta.core.scoring.hbonds._core_scoring_hbonds_
rosetta.core.scoring.hbonds.hbtrie
rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
rosetta.core.scoring.interface_
rosetta.core.scoring.interface_._core_scoring_interface__
rosetta.core.scoring.loop_graph
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
rosetta.core.scoring.memb_etable
rosetta.core.scoring.memb_etable._core_scoring_memb_etable_
rosetta.core.scoring.membrane
rosetta.core.scoring.membrane._core_scoring_membrane_
rosetta.core.scoring.methods
rosetta.core.scoring.methods._core_scoring_methods_
rosetta.core.scoring.methods.carbohydrates
rosetta.core.scoring.methods.carbohydrates._core_scoring_methods_carbohydrates_
rosetta.core.scoring.methods.dfire
rosetta.core.scoring.methods.dfire._core_scoring_methods_dfire_
rosetta.core.scoring.methods.vall_lookback
rosetta.core.scoring.methods.vall_lookback._core_scoring_methods_vall_lookback_
rosetta.core.scoring.mm
rosetta.core.scoring.mm._core_scoring_mm_
rosetta.core.scoring.mm.mmtrie
rosetta.core.scoring.mm.mmtrie._core_scoring_mm_mmtrie_
rosetta.core.scoring.motif
rosetta.core.scoring.motif._core_scoring_motif_
rosetta.core.scoring.nv
rosetta.core.scoring.nv._core_scoring_nv_
rosetta.core.scoring.orbitals
rosetta.core.scoring.orbitals._core_scoring_orbitals_
rosetta.core.scoring.packing
rosetta.core.scoring.packing._core_scoring_packing_
rosetta.core.scoring.packstat
rosetta.core.scoring.packstat._core_scoring_packstat_
rosetta.core.scoring.rna
rosetta.core.scoring.rna._core_scoring_rna_
rosetta.core.scoring.rna.chemical_shift
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
rosetta.core.scoring.rna.data
rosetta.core.scoring.rna.data._core_scoring_rna_data_
rosetta.core.scoring.sasa
rosetta.core.scoring.sasa._core_scoring_sasa_
rosetta.core.scoring.saxs
rosetta.core.scoring.saxs._core_scoring_saxs_
rosetta.core.scoring.sc
rosetta.core.scoring.sc._core_scoring_sc_
rosetta.core.scoring.solid_surface
rosetta.core.scoring.solid_surface._core_scoring_solid_surface_
rosetta.core.scoring.sym_e
rosetta.core.scoring.sym_e._core_scoring_sym_e_
rosetta.core.scoring.symmetry
rosetta.core.scoring.symmetry._core_scoring_symmetry_
rosetta.core.scoring.trie
rosetta.core.scoring.trie._core_scoring_trie_
rosetta.core.scoring.vdwaals
rosetta.core.scoring.vdwaals._core_scoring_vdwaals_'
rosetta.core.sequence
rosetta.core.sequence._core_sequence_
rosetta.core.util
rosetta.core.util._core_util_
rosetta.logging_support
rosetta.numeric
rosetta.numeric._numeric_
rosetta.numeric.alignment
rosetta.numeric.alignment._numeric_alignment_
rosetta.numeric.coordinate_fitting
rosetta.numeric.coordinate_fitting._numeric_coordinate_fitting_
rosetta.numeric.crick_equations
rosetta.numeric.crick_equations._numeric_crick_equations_
rosetta.numeric.deriv
rosetta.numeric.deriv._numeric_deriv_
rosetta.numeric.expression_parser
rosetta.numeric.expression_parser._numeric_expression_parser_
rosetta.numeric.fourier
rosetta.numeric.fourier._numeric_fourier_
rosetta.numeric.geometry
rosetta.numeric.geometry._numeric_geometry_
rosetta.numeric.geometry.hashing
rosetta.numeric.geometry.hashing._numeric_geometry_hashing_
rosetta.numeric.histograms
rosetta.numeric.histograms._numeric_histograms_
rosetta.numeric.internal
rosetta.numeric.internal._numeric_internal_
rosetta.numeric.interpolation
rosetta.numeric.interpolation._numeric_interpolation_
rosetta.numeric.interpolation.full
rosetta.numeric.interpolation.full._numeric_interpolation_full_
rosetta.numeric.interpolation.periodic_range
rosetta.numeric.interpolation.periodic_range._numeric_interpolation_periodic_range_
rosetta.numeric.interpolation.periodic_range.full
rosetta.numeric.interpolation.periodic_range.full._numeric_interpolation_periodic_range_full_
rosetta.numeric.interpolation.periodic_range.half
rosetta.numeric.interpolation.periodic_range.half._numeric_interpolation_periodic_range_half_
rosetta.numeric.interpolation.periodic_range.periodic_value
rosetta.numeric.interpolation.periodic_range.periodic_value._numeric_interpolation_periodic_range_periodic_value_
rosetta.numeric.interpolation.periodic_range.periodic_value.full
rosetta.numeric.interpolation.periodic_range.periodic_value.full._numeric_interpolation_periodic_range_periodic_value_full_
rosetta.numeric.interpolation.periodic_range.periodic_value.half
rosetta.numeric.interpolation.periodic_range.periodic_value.half._numeric_interpolation_periodic_range_periodic_value_half_
rosetta.numeric.interpolation.spline
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
rosetta.numeric.kdtree
rosetta.numeric.kdtree._numeric_kdtree_
rosetta.numeric.kinematic_closure
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
rosetta.numeric.linear_algebra
rosetta.numeric.linear_algebra._numeric_linear_algebra_
rosetta.numeric.model_quality
rosetta.numeric.model_quality._numeric_model_quality_
rosetta.numeric.nls
rosetta.numeric.nls._numeric_nls_
rosetta.numeric.random
rosetta.numeric.random._numeric_random_
rosetta.numeric.statistics
rosetta.numeric.statistics._numeric_statistics_
rosetta.protocols
rosetta.protocols.RotamerDump
rosetta.protocols.RotamerDump._protocols_RotamerDump_
rosetta.protocols._protocols_
rosetta.protocols.abinitio
rosetta.protocols.abinitio._protocols_abinitio_
rosetta.protocols.abinitio.abscript
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
rosetta.protocols.analysis
rosetta.protocols.analysis._protocols_analysis_
rosetta.protocols.anchored_design
rosetta.protocols.anchored_design._protocols_anchored_design_
rosetta.protocols.antibody
rosetta.protocols.antibody._protocols_antibody_
rosetta.protocols.antibody.clusters
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
rosetta.protocols.antibody.constraints
rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
rosetta.protocols.antibody.database
rosetta.protocols.antibody.database._protocols_antibody_database_
rosetta.protocols.antibody.design
rosetta.protocols.antibody.design._protocols_antibody_design_
rosetta.protocols.antibody.snugdock
rosetta.protocols.antibody.snugdock._protocols_antibody_snugdock_
rosetta.protocols.antibody.task_operations
rosetta.protocols.antibody.task_operations._protocols_antibody_task_operations_
rosetta.protocols.antibody_legacy
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
rosetta.protocols.backrub
rosetta.protocols.backrub._protocols_backrub_
rosetta.protocols.boinc
rosetta.protocols.boinc._protocols_boinc_
rosetta.protocols.branch_angle
rosetta.protocols.branch_angle._protocols_branch_angle_
rosetta.protocols.canonical_sampling
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
rosetta.protocols.canonical_sampling.mc_convergence_checks
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
rosetta.protocols.cartesian
rosetta.protocols.cartesian._protocols_cartesian_
rosetta.protocols.checkpoint
rosetta.protocols.checkpoint._protocols_checkpoint_
rosetta.protocols.cluster
rosetta.protocols.cluster._protocols_cluster_
rosetta.protocols.coarse_rna
rosetta.protocols.coarse_rna._protocols_coarse_rna_'
rosetta.protocols.comparative_modeling
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
rosetta.protocols.comparative_modeling.features
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
rosetta.protocols.constraints_additional
rosetta.protocols.constraints_additional._protocols_constraints_additional_
rosetta.protocols.contact_map
rosetta.protocols.contact_map._protocols_contact_map_
rosetta.protocols.cryst
rosetta.protocols.cryst._protocols_cryst_
rosetta.protocols.cyclic_peptide
rosetta.protocols.cyclic_peptide._protocols_cyclic_peptide_
rosetta.protocols.ddg
rosetta.protocols.ddg._protocols_ddg_
rosetta.protocols.denovo_design
rosetta.protocols.denovo_design._protocols_denovo_design_
rosetta.protocols.denovo_design.filters
rosetta.protocols.denovo_design.filters._protocols_denovo_design_filters_
rosetta.protocols.denovo_design.movers
rosetta.protocols.denovo_design.movers._protocols_denovo_design_movers_
rosetta.protocols.design_opt
rosetta.protocols.design_opt._protocols_design_opt_
rosetta.protocols.dna
rosetta.protocols.dna._protocols_dna_
rosetta.protocols.docking
rosetta.protocols.docking._protocols_docking_
rosetta.protocols.docking.membrane
rosetta.protocols.docking.membrane._protocols_docking_membrane_
rosetta.protocols.docking.stateless
rosetta.protocols.docking.stateless._protocols_docking_stateless_
rosetta.protocols.domain_assembly
rosetta.protocols.domain_assembly._protocols_domain_assembly_
rosetta.protocols.electron_density
rosetta.protocols.electron_density._protocols_electron_density_
rosetta.protocols.elscripts
rosetta.protocols.elscripts._protocols_elscripts_
rosetta.protocols.elscripts.modules
rosetta.protocols.elscripts.modules._protocols_elscripts_modules_
rosetta.protocols.environment
rosetta.protocols.environment._protocols_environment_
rosetta.protocols.environment.claims
rosetta.protocols.environment.claims._protocols_environment_claims_
rosetta.protocols.enzdes
rosetta.protocols.enzdes._protocols_enzdes_'
rosetta.protocols.evaluation
rosetta.protocols.evaluation._protocols_evaluation_
rosetta.protocols.farna
rosetta.protocols.farna._protocols_farna_
rosetta.protocols.features
rosetta.protocols.features._protocols_features_
rosetta.protocols.features.helixAssembly
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
rosetta.protocols.features.strand_assembly
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
rosetta.protocols.fibril
rosetta.protocols.fibril._protocols_fibril_
rosetta.protocols.filters
rosetta.protocols.filters._protocols_filters_
rosetta.protocols.fldsgn
rosetta.protocols.fldsgn._protocols_fldsgn_
rosetta.protocols.fldsgn.filters
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
rosetta.protocols.fldsgn.potentials
rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
rosetta.protocols.fldsgn.potentials.sspot
rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
rosetta.protocols.fldsgn.topology
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
rosetta.protocols.flexpack
rosetta.protocols.flexpack._protocols_flexpack_
rosetta.protocols.flexpack.annealer
rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
rosetta.protocols.flexpack.interaction_graph
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
rosetta.protocols.flexpack.rotamer_set
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
rosetta.protocols.flexpep_docking
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
rosetta.protocols.floppy_tail
rosetta.protocols.floppy_tail._protocols_floppy_tail_
rosetta.protocols.flxbb
rosetta.protocols.flxbb._protocols_flxbb_
rosetta.protocols.forge
rosetta.protocols.forge._protocols_forge_
rosetta.protocols.forge.build
rosetta.protocols.forge.build.SegmentInsertConnectionScheme
rosetta.protocols.forge.build.SegmentInsertConnectionScheme._protocols_forge_build_SegmentInsertConnectionScheme_
rosetta.protocols.forge.build._protocols_forge_build_'
rosetta.protocols.forge.components
rosetta.protocols.forge.components._protocols_forge_components_
rosetta.protocols.forge.constraints
rosetta.protocols.forge.constraints._protocols_forge_constraints_'
rosetta.protocols.forge.methods
rosetta.protocols.forge.methods._protocols_forge_methods_
rosetta.protocols.forge.remodel
rosetta.protocols.forge.remodel._protocols_forge_remodel_'
rosetta.protocols.frag_picker
rosetta.protocols.frag_picker._protocols_frag_picker_
rosetta.protocols.frag_picker.nonlocal
rosetta.protocols.frag_picker.nonlocal._protocols_frag_picker_nonlocal_
rosetta.protocols.frag_picker.quota
rosetta.protocols.frag_picker.quota._protocols_frag_picker_quota_
rosetta.protocols.frag_picker.scores
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
rosetta.protocols.frags
rosetta.protocols.frags._protocols_frags_
rosetta.protocols.generalized_kinematic_closure
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
rosetta.protocols.generalized_kinematic_closure.filter
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
rosetta.protocols.generalized_kinematic_closure.perturber
rosetta.protocols.generalized_kinematic_closure.perturber._protocols_generalized_kinematic_closure_perturber_
rosetta.protocols.generalized_kinematic_closure.selector
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
rosetta.protocols.genetic_algorithm
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
rosetta.protocols.grafting
rosetta.protocols.grafting._protocols_grafting_
rosetta.protocols.grafting.simple_movers
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
rosetta.protocols.helical_bundle
rosetta.protocols.helical_bundle._protocols_helical_bundle_
rosetta.protocols.helical_bundle.parameters
rosetta.protocols.helical_bundle.parameters._protocols_helical_bundle_parameters_
rosetta.protocols.helix_capper
rosetta.protocols.helix_capper._protocols_helix_capper_
rosetta.protocols.hotspot_hashing
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
rosetta.protocols.hotspot_hashing.movers
rosetta.protocols.hotspot_hashing.movers._protocols_hotspot_hashing_movers_
rosetta.protocols.hybridization
rosetta.protocols.hybridization._protocols_hybridization_
rosetta.protocols.idealize
rosetta.protocols.idealize._protocols_idealize_
rosetta.protocols.indexed_structure_store
rosetta.protocols.indexed_structure_store._protocols_indexed_structure_store_
rosetta.protocols.indexed_structure_store.filters
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
rosetta.protocols.init
rosetta.protocols.init._protocols_init_
rosetta.protocols.inputter
rosetta.protocols.inputter._protocols_inputter_
rosetta.protocols.interface
rosetta.protocols.interface._protocols_interface_
rosetta.protocols.jd2
rosetta.protocols.jd2._protocols_jd2_
rosetta.protocols.jd2.archive
rosetta.protocols.jd2.archive._protocols_jd2_archive_
rosetta.protocols.jd2.parser
rosetta.protocols.jd2.parser._protocols_jd2_parser_
rosetta.protocols.jobdist
rosetta.protocols.jobdist._protocols_jobdist_
rosetta.protocols.jumping
rosetta.protocols.jumping._protocols_jumping_
rosetta.protocols.kinematic_closure
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
rosetta.protocols.kinematic_closure.perturbers
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
rosetta.protocols.kinematic_closure.pivot_pickers
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
rosetta.protocols.kinematic_closure.solution_pickers
rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
rosetta.protocols.kinmatch
rosetta.protocols.kinmatch._protocols_kinmatch_
rosetta.protocols.ligand_docking
rosetta.protocols.ligand_docking._protocols_ligand_docking_
rosetta.protocols.ligand_docking.ligand_options
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
rosetta.protocols.ligand_docking.rdf
rosetta.protocols.ligand_docking.rdf._protocols_ligand_docking_rdf_
rosetta.protocols.loop_build
rosetta.protocols.loop_build._protocols_loop_build_
rosetta.protocols.loop_modeling
rosetta.protocols.loop_modeling._protocols_loop_modeling_
rosetta.protocols.loop_modeling.refiners
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
rosetta.protocols.loop_modeling.samplers
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
rosetta.protocols.loop_modeling.utilities
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
rosetta.protocols.loophash
rosetta.protocols.loophash._protocols_loophash_
rosetta.protocols.loops
rosetta.protocols.loops._protocols_loops_
rosetta.protocols.loops.loop_closure
rosetta.protocols.loops.loop_closure._protocols_loops_loop_closure_
rosetta.protocols.loops.loop_closure.ccd
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
rosetta.protocols.loops.loop_closure.kinematic_closure
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
rosetta.protocols.loops.loop_mover
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
rosetta.protocols.loops.loop_mover.perturb
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
rosetta.protocols.loops.loop_mover.refine
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
rosetta.protocols.loops.loops_definers
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
rosetta.protocols.make_rot_lib
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
rosetta.protocols.match
rosetta.protocols.match._protocols_match_
rosetta.protocols.match.downstream
rosetta.protocols.match.downstream._protocols_match_downstream_
rosetta.protocols.match.output
rosetta.protocols.match.output._protocols_match_output_
rosetta.protocols.match.upstream
rosetta.protocols.match.upstream._protocols_match_upstream_
rosetta.protocols.matdes
rosetta.protocols.matdes._protocols_matdes_
rosetta.protocols.md
rosetta.protocols.md._protocols_md_
rosetta.protocols.medal
rosetta.protocols.medal._protocols_medal_
rosetta.protocols.membrane
rosetta.protocols.membrane._protocols_membrane_
rosetta.protocols.membrane.geometry
rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
rosetta.protocols.membrane.io
rosetta.protocols.membrane.io._protocols_membrane_io_
rosetta.protocols.membrane.relax
rosetta.protocols.membrane.relax._protocols_membrane_relax_
rosetta.protocols.membrane.symmetry
rosetta.protocols.membrane.symmetry._protocols_membrane_symmetry_
rosetta.protocols.membrane.visualize
rosetta.protocols.membrane.visualize._protocols_membrane_visualize_
rosetta.protocols.metal_interface
rosetta.protocols.metal_interface._protocols_metal_interface_
rosetta.protocols.motif_grafting
rosetta.protocols.motif_grafting._protocols_motif_grafting_
rosetta.protocols.motif_grafting.movers
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
rosetta.protocols.motifs
rosetta.protocols.motifs._protocols_motifs_
rosetta.protocols.moves
rosetta.protocols.moves._protocols_moves_
rosetta.protocols.moves.mc_convergence_checks
rosetta.protocols.moves.mc_convergence_checks._protocols_moves_mc_convergence_checks_
rosetta.protocols.mpi_refinement
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
rosetta.protocols.multistate_design
rosetta.protocols.multistate_design._protocols_multistate_design_'
rosetta.protocols.ncbb
rosetta.protocols.ncbb._protocols_ncbb_
rosetta.protocols.ncbb.oop
rosetta.protocols.ncbb.oop._protocols_ncbb_oop_
rosetta.protocols.neighbor
rosetta.protocols.neighbor._protocols_neighbor_
rosetta.protocols.noesy_assign
rosetta.protocols.noesy_assign._protocols_noesy_assign_
rosetta.protocols.nonlocal
rosetta.protocols.nonlocal._protocols_nonlocal_
rosetta.protocols.normalmode
rosetta.protocols.normalmode._protocols_normalmode_
rosetta.protocols.optimize_weights
rosetta.protocols.optimize_weights._protocols_optimize_weights_
rosetta.protocols.outputter
rosetta.protocols.outputter._protocols_outputter_
rosetta.protocols.pack_daemon
rosetta.protocols.pack_daemon._protocols_pack_daemon_
rosetta.protocols.pb_potential
rosetta.protocols.pb_potential._protocols_pb_potential_
rosetta.protocols.pmut_scan
rosetta.protocols.pmut_scan._protocols_pmut_scan_
rosetta.protocols.pockets
rosetta.protocols.pockets._protocols_pockets_
rosetta.protocols.pose_reporters
rosetta.protocols.pose_reporters._protocols_pose_reporters_'
rosetta.protocols.pose_selectors
rosetta.protocols.pose_selectors._protocols_pose_selectors_'
rosetta.protocols.protein_interface_design
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
rosetta.protocols.protein_interface_design.filters
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
rosetta.protocols.protein_interface_design.movers
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
rosetta.protocols.qsar
rosetta.protocols.qsar._protocols_qsar_
rosetta.protocols.qsar.scoring_grid
rosetta.protocols.qsar.scoring_grid._protocols_qsar_scoring_grid_
rosetta.protocols.rbsegment_relax
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
rosetta.protocols.relax
rosetta.protocols.relax._protocols_relax_
rosetta.protocols.relax.membrane
rosetta.protocols.relax.membrane._protocols_relax_membrane_
rosetta.protocols.rigid
rosetta.protocols.rigid._protocols_rigid_
rosetta.protocols.rosetta_scripts
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
rosetta.protocols.rotamer_recovery
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
rosetta.protocols.rpc
rosetta.protocols.rpc._protocols_rpc_
rosetta.protocols.sasa_scores
rosetta.protocols.sasa_scores._protocols_sasa_scores_
rosetta.protocols.scoring
rosetta.protocols.scoring._protocols_scoring_
rosetta.protocols.scoring.methods
rosetta.protocols.scoring.methods._protocols_scoring_methods_
rosetta.protocols.scoring.methods.pcs
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
rosetta.protocols.scoring.methods.pcs2
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
rosetta.protocols.scoring.methods.pcsTs1
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
rosetta.protocols.scoring.methods.pcsTs2
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
rosetta.protocols.scoring.methods.pcsTs3
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
rosetta.protocols.scoring.methods.pcsTs4
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
rosetta.protocols.scoring.methods.saxs
rosetta.protocols.scoring.methods.saxs._protocols_scoring_methods_saxs_
rosetta.protocols.seeded_abinitio
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
rosetta.protocols.sic_dock
rosetta.protocols.sic_dock._protocols_sic_dock_
rosetta.protocols.sic_dock.scores
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
rosetta.protocols.simple_filters
rosetta.protocols.simple_filters._protocols_simple_filters_
rosetta.protocols.simple_moves
rosetta.protocols.simple_moves._protocols_simple_moves_
rosetta.protocols.simple_moves.asym_fold_and_dock
rosetta.protocols.simple_moves.asym_fold_and_dock._protocols_simple_moves_asym_fold_and_dock_
rosetta.protocols.simple_moves.bin_transitions
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
rosetta.protocols.simple_moves.chiral
rosetta.protocols.simple_moves.chiral._protocols_simple_moves_chiral_
rosetta.protocols.simple_moves.hbs
rosetta.protocols.simple_moves.hbs._protocols_simple_moves_hbs_
rosetta.protocols.simple_moves.oop
rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
rosetta.protocols.simple_moves.rational_mc
rosetta.protocols.simple_moves.rational_mc._protocols_simple_moves_rational_mc_
rosetta.protocols.simple_moves.sidechain_moves
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
rosetta.protocols.simple_moves.symmetry
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
rosetta.protocols.sparta
rosetta.protocols.sparta._protocols_sparta_
rosetta.protocols.ss_prediction
rosetta.protocols.ss_prediction._protocols_ss_prediction_
rosetta.protocols.star
rosetta.protocols.star._protocols_star_
rosetta.protocols.stepwise
rosetta.protocols.stepwise._protocols_stepwise_
rosetta.protocols.stepwise.legacy
rosetta.protocols.stepwise.legacy._protocols_stepwise_legacy_
rosetta.protocols.stepwise.legacy.modeler
rosetta.protocols.stepwise.legacy.modeler._protocols_stepwise_legacy_modeler_
rosetta.protocols.stepwise.legacy.modeler.protein
rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
rosetta.protocols.stepwise.legacy.modeler.rna
rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
rosetta.protocols.stepwise.legacy.modeler.rna.connection
rosetta.protocols.stepwise.legacy.modeler.rna.connection._protocols_stepwise_legacy_modeler_rna_connection_
rosetta.protocols.stepwise.legacy.screener
rosetta.protocols.stepwise.legacy.screener._protocols_stepwise_legacy_screener_'
rosetta.protocols.stepwise.modeler
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
rosetta.protocols.stepwise.modeler.align
rosetta.protocols.stepwise.modeler.align._protocols_stepwise_modeler_align_
rosetta.protocols.stepwise.modeler.movemap
rosetta.protocols.stepwise.modeler.movemap._protocols_stepwise_modeler_movemap_
rosetta.protocols.stepwise.modeler.options
rosetta.protocols.stepwise.modeler.options._protocols_stepwise_modeler_options_
rosetta.protocols.stepwise.modeler.packer
rosetta.protocols.stepwise.modeler.packer._protocols_stepwise_modeler_packer_
rosetta.protocols.stepwise.modeler.polar_hydrogens
rosetta.protocols.stepwise.modeler.polar_hydrogens._protocols_stepwise_modeler_polar_hydrogens_
rosetta.protocols.stepwise.modeler.precomputed
rosetta.protocols.stepwise.modeler.precomputed._protocols_stepwise_modeler_precomputed_
rosetta.protocols.stepwise.modeler.protein
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
rosetta.protocols.stepwise.modeler.protein.beta
rosetta.protocols.stepwise.modeler.protein.beta._protocols_stepwise_modeler_protein_beta_
rosetta.protocols.stepwise.modeler.protein.checker
rosetta.protocols.stepwise.modeler.protein.checker._protocols_stepwise_modeler_protein_checker_
rosetta.protocols.stepwise.modeler.protein.loop_close
rosetta.protocols.stepwise.modeler.protein.loop_close._protocols_stepwise_modeler_protein_loop_close_
rosetta.protocols.stepwise.modeler.rna
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
rosetta.protocols.stepwise.modeler.rna.bulge
rosetta.protocols.stepwise.modeler.rna.bulge._protocols_stepwise_modeler_rna_bulge_
rosetta.protocols.stepwise.modeler.rna.checker
rosetta.protocols.stepwise.modeler.rna.checker._protocols_stepwise_modeler_rna_checker_
rosetta.protocols.stepwise.modeler.rna.helix
rosetta.protocols.stepwise.modeler.rna.helix._protocols_stepwise_modeler_rna_helix_
rosetta.protocols.stepwise.modeler.rna.o2prime
rosetta.protocols.stepwise.modeler.rna.o2prime._protocols_stepwise_modeler_rna_o2prime_
rosetta.protocols.stepwise.modeler.rna.phosphate
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
rosetta.protocols.stepwise.modeler.rna.rigid_body
rosetta.protocols.stepwise.modeler.rna.rigid_body._protocols_stepwise_modeler_rna_rigid_body_
rosetta.protocols.stepwise.modeler.rna.sugar
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
rosetta.protocols.stepwise.modeler.working_parameters
rosetta.protocols.stepwise.modeler.working_parameters._protocols_stepwise_modeler_working_parameters_
rosetta.protocols.stepwise.monte_carlo
rosetta.protocols.stepwise.monte_carlo._protocols_stepwise_monte_carlo_
rosetta.protocols.stepwise.monte_carlo.mover
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
rosetta.protocols.stepwise.monte_carlo.options
rosetta.protocols.stepwise.monte_carlo.options._protocols_stepwise_monte_carlo_options_
rosetta.protocols.stepwise.monte_carlo.rna
rosetta.protocols.stepwise.monte_carlo.rna._protocols_stepwise_monte_carlo_rna_
rosetta.protocols.stepwise.monte_carlo.submotif
rosetta.protocols.stepwise.monte_carlo.submotif._protocols_stepwise_monte_carlo_submotif_
rosetta.protocols.stepwise.options
rosetta.protocols.stepwise.options._protocols_stepwise_options_
rosetta.protocols.stepwise.sampler
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
rosetta.protocols.stepwise.sampler.copy_dofs
rosetta.protocols.stepwise.sampler.copy_dofs._protocols_stepwise_sampler_copy_dofs_
rosetta.protocols.stepwise.sampler.input_streams
rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
rosetta.protocols.stepwise.sampler.protein
rosetta.protocols.stepwise.sampler.protein._protocols_stepwise_sampler_protein_
rosetta.protocols.stepwise.sampler.rigid_body
rosetta.protocols.stepwise.sampler.rigid_body._protocols_stepwise_sampler_rigid_body_
rosetta.protocols.stepwise.sampler.rna
rosetta.protocols.stepwise.sampler.rna._protocols_stepwise_sampler_rna_
rosetta.protocols.stepwise.sampler.screener
rosetta.protocols.stepwise.sampler.screener._protocols_stepwise_sampler_screener_
rosetta.protocols.stepwise.screener
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
rosetta.protocols.stepwise.setup
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
rosetta.protocols.surface_docking
rosetta.protocols.surface_docking._protocols_surface_docking_
rosetta.protocols.symmetric_docking
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
rosetta.protocols.symmetric_docking.membrane
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
rosetta.protocols.toolbox
rosetta.protocols.toolbox._protocols_toolbox_
rosetta.protocols.toolbox.match_enzdes_util
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
rosetta.protocols.toolbox.pose_manipulation
rosetta.protocols.toolbox.pose_manipulation._protocols_toolbox_pose_manipulation_
rosetta.protocols.toolbox.pose_metric_calculators
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
rosetta.protocols.toolbox.rigid_body
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
rosetta.protocols.toolbox.rotamer_set_operations
rosetta.protocols.toolbox.rotamer_set_operations._protocols_toolbox_rotamer_set_operations_
rosetta.protocols.toolbox.sample_around
rosetta.protocols.toolbox.sample_around._protocols_toolbox_sample_around_
rosetta.protocols.toolbox.task_operations
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
rosetta.protocols.topology_broker
rosetta.protocols.topology_broker._protocols_topology_broker_'
rosetta.protocols.topology_broker.claims
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
rosetta.protocols.topology_broker.weights
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
rosetta.protocols.trajectory
rosetta.protocols.trajectory._protocols_trajectory_
rosetta.protocols.unfolded_state_energy_calculator
rosetta.protocols.unfolded_state_energy_calculator._protocols_unfolded_state_energy_calculator_
rosetta.protocols.viewer
rosetta.protocols.viewer._protocols_viewer_
rosetta.protocols.vip
rosetta.protocols.vip._protocols_vip_
rosetta.protocols.wum
rosetta.protocols.wum._protocols_wum_
rosetta.protocols.wum2
rosetta.protocols.wum2._protocols_wum2_
rosetta.utility
rosetta.utility._utility_
rosetta.utility.boinc
rosetta.utility.boinc._utility_boinc_
rosetta.utility.excn
rosetta.utility.excn._utility_excn_
rosetta.utility.factory
rosetta.utility.factory._utility_factory_
rosetta.utility.file
rosetta.utility.file._utility_file_
rosetta.utility.graph
rosetta.utility.graph._utility_graph_
rosetta.utility.io
rosetta.utility.io._utility_io_
rosetta.utility.json_spirit
rosetta.utility.json_spirit._utility_json_spirit_
rosetta.utility.keys
rosetta.utility.keys._utility_keys_
rosetta.utility.libsvm
rosetta.utility.libsvm._utility_libsvm_
rosetta.utility.lua
rosetta.utility.lua._utility_lua_
rosetta.utility.options
rosetta.utility.options._utility_options_
rosetta.utility.options.keys
rosetta.utility.options.keys._utility_options_keys_
rosetta.utility.pointer
rosetta.utility.pointer._utility_pointer_
rosetta.utility.pointer.boost
rosetta.utility.pointer.boost._utility_pointer_boost_
rosetta.utility.pointer.std
rosetta.utility.pointer.std._utility_pointer_std_
rosetta.utility.py
rosetta.utility.py._utility_py_
rosetta.utility.query
rosetta.utility.query._utility_query_
rosetta.utility.signals
rosetta.utility.signals._utility_signals_
rosetta.utility.sql_database
rosetta.utility.sql_database._utility_sql_database_
rosetta.utility.tag
rosetta.utility.tag._utility_tag_
rosetta.utility.thread
rosetta.utility.thread._utility_thread_
rosetta.utility.tools
rosetta.utility.tools._utility_tools_
rosetta.version'
[hide private]