Module _protocols_features_strand_assembly_
Classes
SandwichFeatures
SandwichFeaturesAP
SandwichFeaturesCAP
SandwichFeaturesCreator
SandwichFeaturesCreatorAP
SandwichFeaturesCreatorCAP
SandwichFragment
SandwichFragmentAP
SandwichFragmentCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
StrandBundleFeatures
StrandBundleFeaturesAP
StrandBundleFeaturesCAP
StrandBundleFeaturesCreator
StrandBundleFeaturesCreatorAP
StrandBundleFeaturesCreatorCAP
StrandFragment
StrandFragmentAP
StrandFragmentCAP
__CPP_SandwichFeaturesCreator__
__CPP_SandwichFeatures__
__CPP_StrandBundleFeaturesCreator__
__CPP_StrandBundleFeatures__
Functions
Run_WriteToDB_sandwich
WriteToDB_AA_to_terminal_loops
WriteToDB_avg_b_factor_CB_at_each_component
WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets
WriteToDB_dssp_ratio_in_sw
WriteToDB_ending_loop
WriteToDB_hydrophobic_ratio_net_charge
WriteToDB_long_strand_id_in_each_sw
WriteToDB_min_avg_dis_between_sheets_by_cen_res
WriteToDB_min_dis_between_sheets_by_all_res
WriteToDB_number_of_AAs_in_a_pair_of_edge_strands
WriteToDB_number_of_core_heading_FWY_in_sw
WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw
WriteToDB_number_of_core_heading_W_in_sw
WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands
WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands
WriteToDB_number_of_edge_strands_in_each_sw
WriteToDB_number_of_sheets_that_surround_this_sheet
WriteToDB_number_strands_in_each_sw
WriteToDB_prolines_that_seem_to_prevent_aggregation
WriteToDB_ratio_of_core_heading_FWY_in_sw
WriteToDB_rkde
WriteToDB_rkde_in_strands
WriteToDB_sandwich
WriteToDB_sandwich_by_AA_w_direction
WriteToDB_sheet
WriteToDB_sheet_antiparallel
WriteToDB_sheet_connectivity
WriteToDB_sheet_id
WriteToDB_shortest_dis_between_facing_aro_in_sw
WriteToDB_starting_loop
WriteToDB_sw_can_by_sh
WriteToDB_sw_res_size
WriteToDB_topology_candidate
WriteToDB_turn_AA
WriteToDB_turn_type
WriteToDB_whether_sw_is_not_connected_with_continuous_atoms
absolute_vec
cal_dis_angle_to_find_sheet
cal_min_avg_dis_between_sheets_by_cen_res
cal_min_avg_dis_between_two_sheets_by_cen_res
cal_min_dis_between_sheets_by_all_res
cal_min_dis_between_two_sheets_by_all_res
cal_num_of_sheets_that_surround_this_sheet
cal_shortest_dis_between_facing_aro_in_sw
calculate_dihedral_w_4_resnums
change_sheet_id_if_possible
check_LR
check_PA
check_canonicalness_of_LR
check_canonicalness_of_PA
check_canonicalness_of_parallel_EE
check_heading_direction
check_helix_existence
check_strand_too_closeness
check_sw_by_dis
check_whether_hairpin_connects_short_strand
check_whether_same_direction_strands_connect_two_sheets_or_a_loop
check_whether_sheets_are_connected_with_near_bb_atoms
check_whether_strand_i_is_in_sheet
check_whether_sw_by_sh_id_still_alive
check_whether_sw_is_not_connected_with_continuous_atoms
check_whether_this_pdb_should_be_excluded
check_whether_this_sheet_is_too_short
count_AA_w_direction
count_AA_wo_direction
delete_this_struct_id
delete_this_sw_can_by_sh_id_from_sw_by_comp
determine_core_heading_surface_heading_by_distance
determine_heading_direction_by_vector
find_sheet
get_all_residues_in_this_sheet
get_all_strands_in_sheet_i
get_aro_residues_in_this_sheet
get_avg_dis_CA_CA
get_avg_dis_strands
get_central_residues_in_each_of_two_edge_strands
get_central_residues_in_other_sheet
get_central_residues_in_this_sheet
get_chain_B_resNum
get_closest_distance_between_strands
get_current_bs_id_and_closest_edge_bs_id_in_different_sheet
get_current_strands_in_sheet
get_distinct_sheet_id_from_sheet_table
get_distinct_sw_id_from_sandwich_table
get_full_strands
get_full_strands_from_sheet
get_list_of_residues_in_sheet_i
get_max_sheet_id
get_next_starting_res_for_connecting_strands
get_num_of_distinct_sheet_id
get_num_of_sheets_that_surround_this_sheet
get_num_strands_in_this_sheet
get_segment_id
get_sheet_antiparallel_info
get_shortest_among_4_vals
get_size_sandwich_PK_id
get_start_end_res_num_in_the_longest_strand
get_starting_res_for_connecting_strands
get_tag
get_vec_AA_kind
get_vec_distinct_sheet_id
get_vec_of_sw_can_by_sh_id
get_vector_of_loop_AA_distribution
get_vector_of_strand_AA_distribution
identify_sheet_id_by_residue_end
is_this_strand_at_edge
is_this_strand_at_edge_by_looking_db
judge_facing
prepare_WriteToDB_sandwich
prepare_and_write_number_of_electrostatic_interactions_of_residues_to_files
process_decoy
report_heading_directions_of_all_AA_in_a_strand
retrieve_residue_num_of_rkde
round_to_Real
round_to_Size
round_to_float
see_edge_or_core_or_loop_or_short_edge
see_whether_sheet_is_antiparallel
see_whether_sheets_can_be_combined
see_whether_this_sw_has_SS_bond
write_AA_distribution_with_direction_to_a_file
write_AA_distribution_without_direction_to_a_file
write_AA_kind_to_a_file
write_beta_sheet_capping_info_to_a_file
write_chain_B_resNum_to_a_file
write_heading_direction_of_all_AA_in_a_strand_to_a_file
write_number_of_electrostatic_interactions_of_residues_to_files
write_p_aa_pp_of_AAs_to_a_file
write_phi_psi_of_each_residue_to_a_file
write_rama_of_AAs_to_a_file
write_resfile_to_a_file
write_resfile_to_a_file_when_seq_rec_is_bad
Variables
__package__
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