Module _protocols_antibody_
Classes
Ab_TemplateInfo
Ab_TemplateInfoAP
Ab_TemplateInfoCAP
AntibodyEnumManager
AntibodyEnumManagerAP
AntibodyEnumManagerCAP
AntibodyFeatures
AntibodyFeaturesAP
AntibodyFeaturesCAP
AntibodyFeaturesCreator
AntibodyFeaturesCreatorAP
AntibodyFeaturesCreatorCAP
AntibodyInfo
AntibodyInfoAP
AntibodyInfoCAP
AntibodyModelerProtocol
AntibodyModelerProtocolAP
AntibodyModelerProtocolCAP
AntibodyNumbering
AntibodyNumberingAP
AntibodyNumberingCAP
AntibodyNumberingParser
AntibodyNumberingParserAP
AntibodyNumberingParserCAP
AntibodyNumberingSchemeEnum
AntibodyRegionEnum
CDRDefinitionEnum
CDRLandmarkEnum
CDRNameEnum
CDRsMinPackMin
CDRsMinPackMinAP
CDRsMinPackMinCAP
CloseOneCDRLoop
CloseOneCDRLoopAP
CloseOneCDRLoopCAP
FrameWork
FrameWorkAP
FrameWorkCAP
GraftCDRLoopsProtocol
GraftCDRLoopsProtocolAP
GraftCDRLoopsProtocolCAP
GraftOneCDRLoop
GraftOneCDRLoopAP
GraftOneCDRLoopCAP
GraftedStemOptimizer
GraftedStemOptimizerAP
GraftedStemOptimizerCAP
H3BaseTypeEnum
H3CterInsert
H3CterInsertAP
H3CterInsertCAP
H3PerturbCCD
H3PerturbCCDAP
H3PerturbCCDCAP
H3RefineCCD
H3RefineCCDAP
H3RefineCCDCAP
LHRepulsiveRamp
LHRepulsiveRampAP
LHRepulsiveRampCAP
LightChainTypeEnum
ModelCDRH3
ModelCDRH3AP
ModelCDRH3CAP
PDBLandmark
PDBLandmarkAP
PDBLandmarkCAP
PackingAngleEnum
ParatopeMetric_T_double_T
ParatopeMetric_T_double_TAP
ParatopeMetric_T_double_TCAP
ParatopeMetric_T_long_int_T
ParatopeMetric_T_long_int_TAP
ParatopeMetric_T_long_int_TCAP
RefineBetaBarrel
RefineBetaBarrelAP
RefineBetaBarrelCAP
RefineOneCDRLoop
RefineOneCDRLoopAP
RefineOneCDRLoopCAP
RefineOneCDRLoopCentroid
RefineOneCDRLoopCentroidAP
RefineOneCDRLoopCentroidCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
__CPP_AntibodyFeaturesCreator__
__CPP_AntibodyFeatures__
__CPP_AntibodyModelerProtocol__
__CPP_CDRsMinPackMin__
__CPP_CloseOneCDRLoop__
__CPP_GraftCDRLoopsProtocol__
__CPP_GraftOneCDRLoop__
__CPP_GraftedStemOptimizer__
__CPP_H3CterInsert__
__CPP_H3PerturbCCD__
__CPP_H3RefineCCD__
__CPP_LHRepulsiveRamp__
__CPP_ModelCDRH3__
__CPP_RefineBetaBarrel__
__CPP_RefineOneCDRLoopCentroid__
__CPP_RefineOneCDRLoop__
Functions
CDR_H3_cter_filter
CDR_H3_filter_legacy_code_with_old_rule
align_to_native
cdr_CN_anchor_distance
cdr_energy
check_fix_aho_cdr_numbering
cutpoint_separation
cutpoints_separation
get_cdr_bool_from_tag
get_cdr_loops
global_loop_rmsd
is_H3_rama_kinked
kink_RD_Hbond
kink_Trp_Hbond
kink_bb_Hbond
kink_dihedral
paratope_charge
paratope_sasa
pose_charge
select_epitope_residues
setup_A_LH_foldtree
setup_LH_A_foldtree
setup_packer_task
simple_fold_tree
simple_one_loop_fold_tree
vl_vh_orientation_coords
Variables
AHO_Scheme
AntibodyNumberingSchemeEnum_start
AntibodyNumberingSchemeEnum_total
AntibodyRegionEnum_start
AntibodyRegionEnum_total
Aroop
CDRDefinitionEnum_start
CDRDefinitionEnum_total
CDRLandmarkEnum_total
CDRNameEnum_proto_start
CDRNameEnum_proto_total
CDRNameEnum_start
CDRNameEnum_total
Chothia
Chothia_Scheme
Enhanced_Chothia_Scheme
Extended
H3BaseTypeEnum_start
H3BaseTypeEnum_total
H_chain_last_loop
IMGT_Scheme
Kabat
Kabat_Scheme
Kinked
L_chain_last_loop
LightChainTypeEnum_start
LightChainTypeEnum_total
Martin
NONE
Neutral
North
PackingAngleEnum_start
PackingAngleEnum_total
Unknown
VH_sheet_1
VH_sheet_2
VL_sheet_1
VL_sheet_2
__package__
antigen_region
camelid_last_loop
cdr_end
cdr_region
cdr_start
framework_region
h1
h2
h3
h4
kappa
l1
l2
l3
l4
lambda
lambda6
num_cdr_loops
proto_h4
proto_l4
start_cdr_loop
unknown
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