Module _protocols_hybridization_
Classes
AlignOption
AllResiduesChanged
AllResiduesChangedAP
AllResiduesChangedCAP
BackboneTorsionPerturbation
BackboneTorsionPerturbationAP
BackboneTorsionPerturbationCAP
BackboneTorsionPerturbationCreator
BackboneTorsionPerturbationCreatorAP
BackboneTorsionPerturbationCreatorCAP
BackboneTorsionSampler
BackboneTorsionSamplerAP
BackboneTorsionSamplerCAP
BackboneTorsionSamplerCreator
BackboneTorsionSamplerCreatorAP
BackboneTorsionSamplerCreatorCAP
CartesianHybridize
CartesianHybridizeAP
CartesianHybridizeCAP
CartesianSampler
CartesianSamplerAP
CartesianSamplerCAP
CartesianSamplerCreator
CartesianSamplerCreatorAP
CartesianSamplerCreatorCAP
ChunkTrialMover
ChunkTrialMoverAP
ChunkTrialMoverCAP
DDomainParse
DDomainParseAP
DDomainParseCAP
DomainAssembly
DomainAssemblyAP
DomainAssemblyCAP
FoldTreeHybridize
FoldTreeHybridizeAP
FoldTreeHybridizeCAP
FragmentBiasAssigner
FragmentBiasAssignerAP
FragmentBiasAssignerCAP
HybridizeFoldtreeDynamic
HybridizeFoldtreeDynamicAP
HybridizeFoldtreeDynamicCAP
HybridizeProtocol
HybridizeProtocolAP
HybridizeProtocolCAP
HybridizeProtocolCreator
HybridizeProtocolCreatorAP
HybridizeProtocolCreatorCAP
InsertChunkMover
InsertChunkMoverAP
InsertChunkMoverCAP
MRMover
MRMoverAP
MRMoverCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
TMalign
TMalignAP
TMalignCAP
TemplateHistory
TemplateHistoryAP
TemplateHistoryCAP
WeightedFragmentSmoothTrialMover
WeightedFragmentSmoothTrialMoverAP
WeightedFragmentSmoothTrialMoverCAP
WeightedFragmentTrialMover
WeightedFragmentTrialMoverAP
WeightedFragmentTrialMoverCAP
__CPP_AllResiduesChanged__
__CPP_BackboneTorsionPerturbationCreator__
__CPP_BackboneTorsionPerturbation__
__CPP_BackboneTorsionSamplerCreator__
__CPP_BackboneTorsionSampler__
__CPP_CartesianHybridize__
__CPP_CartesianSamplerCreator__
__CPP_CartesianSampler__
__CPP_ChunkTrialMover__
__CPP_DomainAssembly__
__CPP_FoldTreeHybridize__
__CPP_HybridizeProtocolCreator__
__CPP_HybridizeProtocol__
__CPP_InsertChunkMover__
__CPP_MRMover__
__CPP_TemplateHistory__
__CPP_WeightedFragmentSmoothTrialMover__
__CPP_WeightedFragmentTrialMover__
Functions
add_non_protein_cst
add_strand_pairs_cst
apply_transformation
atom_map_valid_size
create_fragment_set
create_fragment_set_no_ssbias
discontinued_lower
discontinued_upper
downstream_residues_from_jump
generate_centroid_constraints
generate_fullatom_constraints
get_gdtmm
get_num_residues_nonvirt
get_num_residues_prot
get_superposition_transformation
natom_aligned
partial_align
renumber_with_pdb_info
setup_centroid_constraints
setup_fullatom_constraints
setup_user_coordinate_constraints
update_atom_map
Variables
__package__
all_chunks
random_chunk
[
hide private
]