Module _protocols_comparative_modeling_
Classes
AlignRmsdTargetEvaluatorCreator
AlignRmsdTargetEvaluatorCreatorAP
AlignRmsdTargetEvaluatorCreatorCAP
Align_RmsdEvaluator
Align_RmsdEvaluatorAP
Align_RmsdEvaluatorCAP
Align_RotamerEvaluator
Align_RotamerEvaluatorAP
Align_RotamerEvaluatorCAP
AlignmentCluster
AlignmentClusterAP
AlignmentClusterCAP
AlignmentClustering
AlignmentClusteringAP
AlignmentClusteringCAP
AlignmentSet
AlignmentSetAP
AlignmentSetCAP
ExtraThreadingMover
ExtraThreadingMoverAP
ExtraThreadingMoverCAP
GenericJobInputter
GenericJobInputterAP
GenericJobInputterCAP
GenericJobInputterCreator
GenericJobInputterCreatorAP
GenericJobInputterCreatorCAP
IgnoreSubsetConstraintSet
IgnoreSubsetConstraintSetAP
IgnoreSubsetConstraintSetCAP
LoopRelaxMover
LoopRelaxMoverAP
LoopRelaxMoverCAP
LoopRelaxMoverCreator
LoopRelaxMoverCreatorAP
LoopRelaxMoverCreatorCAP
LoopRelaxThreadingMover
LoopRelaxThreadingMoverAP
LoopRelaxThreadingMoverCAP
MultiThreadingMover
MultiThreadingMoverAP
MultiThreadingMoverCAP
PartialThreadingMover
PartialThreadingMoverAP
PartialThreadingMoverCAP
RecoverSideChainsMover
RecoverSideChainsMoverAP
RecoverSideChainsMoverCAP
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase_T_core_chemical_ChemicalManager_TAP
SingletonBase_T_core_chemical_ChemicalManager_TCAP
StealLigandMover
StealLigandMoverAP
StealLigandMoverCAP
StealSideChainsMover
StealSideChainsMoverAP
StealSideChainsMoverCAP
ThreadingJob
ThreadingJobAP
ThreadingJobCAP
ThreadingJobInputter
ThreadingJobInputterAP
ThreadingJobInputterCAP
ThreadingJobInputterCreator
ThreadingJobInputterCreatorAP
ThreadingJobInputterCreatorCAP
ThreadingMover
ThreadingMoverAP
ThreadingMoverCAP
__CPP_AlignRmsdTargetEvaluatorCreator__
__CPP_Align_RmsdEvaluator__
__CPP_Align_RotamerEvaluator__
__CPP_ExtraThreadingMover__
__CPP_GenericJobInputterCreator__
__CPP_GenericJobInputter__
__CPP_IgnoreSubsetConstraintSet__
__CPP_LoopRelaxMoverCreator__
__CPP_LoopRelaxMover__
__CPP_LoopRelaxThreadingMover__
__CPP_MultiThreadingMover__
__CPP_PartialThreadingMover__
__CPP_RecoverSideChainsMover__
__CPP_StealLigandMover__
__CPP_StealSideChainsMover__
__CPP_ThreadingJobInputterCreator__
__CPP_ThreadingJobInputter__
__CPP_ThreadingMover__
Functions
alignments_from_cmd_line
bounded_loops_from_alignment
cm_main
gather_coords
initialize_ss
loops_are_closed
loops_from_alignment
loops_from_transitive_alignments
pick_loops_chainbreak
pick_loops_unaligned
poses_from_cmd_line
randomize_selected_atoms
rebuild_loops_until_closed
steal_ligands
templates_from_cmd_line
Variables
__package__
[
hide private
]