Module _protocols_stepwise_setup_
Classes
StepWiseCSA_JobDistributor
StepWiseCSA_JobDistributorAP
StepWiseCSA_JobDistributorCAP
StepWiseJobDistributor
StepWiseJobDistributorAP
StepWiseJobDistributorCAP
StepWiseMonteCarloJobDistributor
StepWiseMonteCarloJobDistributorAP
StepWiseMonteCarloJobDistributorCAP
__CPP_StepWiseCSA_JobDistributor__
__CPP_StepWiseJobDistributor__
__CPP_StepWiseMonteCarloJobDistributor__
Functions
add_cutpoint_closed
add_virtual_sugar_res
check_extra_minimize_res_are_input
check_working_res
cleanup
define_chains
figure_out_dock_domain_map
figure_out_fixed_domain_map
figure_out_motif_mode
figure_out_sample_res
figure_out_working_res
fill_full_model_info_from_command_line
get_chain
get_other_poses
get_pdb_and_cleanup
get_pdb_with_full_model_info
get_tree
initialize_native_and_align_pose
initialize_pose_and_other_poses_from_command_line
just_modeling_RNA
looks_like_reference_pose
parse_out_non_standard_residues
put_in_cutpoint
reorder_pose
setup_fold_trees
setup_jumps
setup_user_defined_jumps
update_fixed_domain_from_extra_minimize_jump_res
update_jump_res
update_pose_fold_tree
Variables
__package__
[
hide private
]